HHsearch alignment for GI: 254780181 and conserved domain: cd02172
>cd02172 RfaE_N RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=99.27 E-value=5.6e-11 Score=85.55 Aligned_cols=134 Identities=14% Similarity=0.097 Sum_probs=79.8
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCC----CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCC
Q ss_conf 6599965899878489999999999748979996455888----766578989999999997642013355441242033
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSV----KTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISFE 77 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~----k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~ 77 (182)
T Consensus 4 kkiv~~~G~FDl~H~GHi~~l~~Ak~~gd~LiVgv~sD~~i~k~k~~Pi~~~~eR~~il~sl~~VD~Vi------i~-~~ 76 (143)
T cd02172 4 KKVVLTHGCFDLLHAGHVRHLLAARSLGDILVVGLTSDRSVLKGPGRPIFPEDLRAEVLAALECVDYVV------LF-DE 76 (143)
T ss_pred CEEEEECCEECCCCHHHHHHHHHHHHCCCEEEEEEECCHHHHCCCCCCEECHHHHHHHHHCCCCCCEEE------EC-CC
T ss_conf 989999273377899999999999974998999996898896689987445999999984537666899------78-99
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCC
Q ss_conf 33322100149707999437652012467799898764799868997068572113269999999859
Q gi|254780181|r 78 GLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISID 145 (182)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g 145 (182)
T Consensus 77 ~~~~~~i~~~kpdi~v~G~Dy~~~~~~~~~~~e~~~~~~~gg~v~~~~-~~~--~~SST~ii~ri~~~ 141 (143)
T cd02172 77 PTAEELIDALQPDIYVKGGDYANGENTGEILAEAEAVEAYGGKIVFTP-GEI--VFSSSGLINRILDE 141 (143)
T ss_pred CCHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCEEEEEC-CCC--CEEHHHHHHHHHHH
T ss_conf 997899987198699989864488987651358999998098999919-998--77779999999986