Query gi|254780181|ref|YP_003064594.1| phosphopantetheine adenylyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 182
No_of_seqs 108 out of 2743
Neff 8.9
Searched_HMMs 39220
Date Mon May 23 09:04:06 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780181.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00168 coaD phosphopantethei 100.0 1.6E-39 4.1E-44 255.6 17.5 158 2-165 1-158 (159)
2 TIGR01510 coaD_prev_kdtB pante 100.0 5.7E-37 1.5E-41 240.4 14.4 158 4-163 1-162 (163)
3 cd02163 PPAT_a Phosphopantethe 100.0 1.1E-35 2.7E-40 232.8 14.1 152 5-162 1-152 (152)
4 PRK08887 nicotinic acid mononu 100.0 1.1E-35 2.9E-40 232.7 11.7 158 1-166 1-170 (173)
5 COG0669 CoaD Phosphopantethein 100.0 1.1E-34 2.8E-39 226.7 15.3 158 1-164 1-158 (159)
6 PRK00071 nadD nicotinic acid m 100.0 1.4E-34 3.5E-39 226.2 13.7 165 1-166 1-198 (200)
7 COG1057 NadD Nicotinic acid mo 100.0 2E-31 5.2E-36 207.3 14.0 167 1-167 2-196 (197)
8 PRK07152 nadD putative nicotin 100.0 1.1E-30 2.7E-35 203.0 11.0 162 2-168 1-186 (343)
9 cd02165 NMNAT This family cont 100.0 5.7E-30 1.4E-34 198.7 11.9 161 5-165 1-193 (194)
10 TIGR00482 TIGR00482 nicotinate 100.0 7.2E-30 1.8E-34 198.1 10.8 161 6-166 1-229 (229)
11 PRK13964 coaD phosphopantethei 100.0 5E-29 1.3E-33 193.1 14.0 139 2-145 1-139 (140)
12 PRK01153 nicotinamide-nucleoti 99.9 1E-26 2.6E-31 179.3 13.6 149 2-163 1-157 (170)
13 cd02166 NMNAT_Archaea This fam 99.9 2.4E-25 6.1E-30 171.1 13.6 148 5-163 2-156 (163)
14 TIGR01527 arch_NMN_Atrans nico 99.9 2.5E-25 6.4E-30 171.0 7.9 149 5-163 2-160 (171)
15 pfam01467 CTP_transf_2 Cytidyl 99.8 9.6E-22 2.4E-26 149.7 5.3 122 6-141 1-148 (148)
16 cd02168 NMNAT_Nudix This domai 99.8 1.5E-20 3.8E-25 142.6 8.1 148 5-163 1-163 (179)
17 PRK13793 nicotinamide-nucleoti 99.8 2.5E-19 6.4E-24 135.3 8.7 156 4-163 6-166 (188)
18 PRK06973 nicotinic acid mononu 99.7 1.3E-17 3.2E-22 125.2 7.4 139 28-166 3-194 (196)
19 COG1056 NadR Nicotinamide mono 99.7 5.9E-17 1.5E-21 121.2 9.8 151 1-163 2-160 (172)
20 PRK05379 bifunctional nicotina 99.7 2.6E-16 6.5E-21 117.4 8.2 150 3-163 6-170 (340)
21 cd02039 cytidylyltransferase_l 99.7 2E-16 5.1E-21 118.0 7.1 134 5-141 1-141 (141)
22 cd02167 NMNAT_NadR The NMNAT d 99.6 4.5E-15 1.1E-19 110.0 5.8 63 5-67 1-64 (157)
23 cd02171 G3P_Cytidylyltransfera 99.5 8.6E-13 2.2E-17 96.4 10.5 124 2-144 1-128 (129)
24 PRK08099 nicotinamide-nucleoti 99.5 1.2E-13 3.2E-18 101.4 6.0 155 1-160 63-230 (411)
25 PRK00777 phosphopantetheine ad 99.4 6.3E-12 1.6E-16 91.2 11.0 136 1-143 4-146 (155)
26 TIGR01526 nadR_NMN_Atrans nico 99.4 3.2E-13 8.2E-18 98.9 4.2 153 2-157 1-171 (346)
27 PRK01170 phosphopantetheine ad 99.4 4.4E-12 1.1E-16 92.1 9.7 132 4-141 2-139 (328)
28 cd02172 RfaE_N RfaE is a prote 99.3 5.6E-11 1.4E-15 85.6 10.3 134 2-145 4-141 (143)
29 KOG3199 consensus 99.2 1.1E-10 2.8E-15 83.8 9.5 160 7-167 13-231 (234)
30 smart00764 Citrate_ly_lig Citr 99.2 7.7E-10 2E-14 78.8 11.4 145 11-160 8-182 (182)
31 pfam08218 Citrate_ly_lig Citra 99.1 1.2E-09 3.2E-14 77.5 11.4 144 11-160 8-182 (182)
32 cd02170 cytidylyltransferase T 99.1 2.2E-09 5.6E-14 76.1 11.6 131 2-145 1-136 (136)
33 cd02164 PPAT_CoAS The PPAT dom 99.0 1.9E-09 4.9E-14 76.4 9.2 131 6-140 2-141 (142)
34 cd02169 Citrate_lyase_ligase C 99.0 1.1E-08 2.8E-13 71.9 11.1 145 10-160 121-296 (296)
35 TIGR00125 cyt_tran_rel cytidyl 99.0 1.4E-09 3.5E-14 77.2 6.4 57 4-63 1-61 (63)
36 COG3053 CitC Citrate lyase syn 98.8 3.3E-07 8.4E-12 63.1 14.9 168 2-175 145-348 (352)
37 COG1019 Predicted nucleotidylt 98.8 4.2E-08 1.1E-12 68.4 9.0 134 1-141 5-145 (158)
38 cd02156 nt_trans nt_trans (nuc 98.8 1.6E-08 4.1E-13 70.9 6.7 130 5-136 1-146 (147)
39 cd02174 CCT CTP:phosphocholine 98.7 1.8E-07 4.6E-12 64.6 10.1 128 5-145 5-138 (150)
40 cd02173 ECT CTP:phosphoethanol 98.7 1.4E-07 3.6E-12 65.3 9.4 134 2-147 2-142 (152)
41 COG0615 TagD Cytidylyltransfer 98.6 4.2E-07 1.1E-11 62.4 10.0 134 1-144 1-139 (140)
42 PRK07143 hypothetical protein; 98.4 8.9E-07 2.3E-11 60.5 7.6 141 3-146 17-164 (277)
43 cd02064 Flavokinase_C Riboflav 98.4 1E-06 2.6E-11 60.2 6.8 141 6-146 2-158 (179)
44 PRK13670 hypothetical protein; 98.4 4E-06 1E-10 56.7 9.6 44 1-45 1-46 (390)
45 PRK04149 sat sulfate adenylylt 98.3 9.4E-05 2.4E-09 48.5 15.0 156 10-166 193-382 (390)
46 pfam05636 DUF795 Protein of un 98.3 1.6E-05 4E-10 53.1 10.6 44 1-45 1-46 (389)
47 cd00517 ATPS ATP-sulfurylase ( 98.2 8.4E-05 2.2E-09 48.7 13.9 152 10-162 164-355 (356)
48 pfam01747 ATP-sulfurylase ATP- 98.2 6.9E-05 1.8E-09 49.2 12.9 152 10-162 124-308 (310)
49 KOG3351 consensus 98.2 6.5E-06 1.7E-10 55.4 7.5 140 4-148 144-290 (293)
50 PRK11316 bifunctional heptose 98.1 6.2E-05 1.6E-09 49.5 11.3 128 2-144 340-473 (473)
51 PRK13671 hypothetical protein; 98.1 5.7E-05 1.5E-09 49.7 10.9 42 2-44 1-44 (298)
52 TIGR01518 g3p_cytidyltrns glyc 98.1 8.5E-06 2.2E-10 54.7 5.9 120 6-141 2-125 (126)
53 COG1323 Predicted nucleotidylt 98.1 1.4E-05 3.5E-10 53.4 6.5 55 1-56 1-59 (358)
54 PRK05627 bifunctional riboflav 98.0 4.6E-05 1.2E-09 50.3 8.7 143 3-146 12-172 (303)
55 COG0196 RibF FAD synthase [Coe 98.0 9.2E-05 2.3E-09 48.5 9.6 143 3-146 16-174 (304)
56 COG2046 MET3 ATP sulfurylase ( 98.0 0.00072 1.8E-08 43.2 14.1 157 3-163 184-376 (397)
57 TIGR00083 ribF riboflavin bios 97.9 3.2E-05 8.2E-10 51.2 5.5 136 5-146 1-160 (296)
58 PRK05537 bifunctional sulfate 97.7 0.0011 2.8E-08 42.1 11.4 153 10-163 194-384 (568)
59 TIGR02199 rfaE_dom_II rfaE bif 97.6 0.0011 2.7E-08 42.2 9.9 127 2-143 11-143 (144)
60 PTZ00308 ethanolamine-phosphat 97.6 0.00059 1.5E-08 43.7 8.4 53 7-59 16-72 (353)
61 PTZ00308 ethanolamine-phosphat 97.2 0.0033 8.4E-08 39.3 8.9 133 2-146 192-331 (353)
62 KOG2803 consensus 97.1 0.0022 5.5E-08 40.3 6.5 56 6-61 12-71 (358)
63 TIGR00124 cit_ly_ligase [citra 96.6 0.014 3.6E-07 35.5 7.8 161 3-167 144-340 (342)
64 KOG2803 consensus 96.6 0.021 5.5E-07 34.4 8.6 51 3-53 199-255 (358)
65 cd02158 PanC_ATPS PanC_ATPS 96.5 0.01 2.5E-07 36.4 6.6 57 3-60 16-79 (183)
66 pfam06574 FAD_syn FAD syntheta 95.7 0.036 9.3E-07 33.0 6.1 60 3-62 7-78 (158)
67 COG2870 RfaE ADP-heptose synth 95.3 0.24 6.1E-06 28.2 10.6 129 2-145 332-466 (467)
68 TIGR00339 sopT sulfate adenyly 94.6 0.24 6.1E-06 28.2 7.6 53 10-63 219-279 (424)
69 PRK00380 panC pantoate--beta-a 94.3 0.1 2.6E-06 30.4 5.0 61 2-63 21-88 (283)
70 cd00560 PanC PanC Pantoate-be 94.1 0.12 3E-06 30.0 5.0 60 2-62 22-88 (276)
71 pfam02569 Pantoate_ligase Pant 93.6 0.095 2.4E-06 30.6 3.8 60 3-63 23-89 (280)
72 PRK13477 bifunctional pantoate 92.9 0.15 3.7E-06 29.4 3.9 59 3-62 21-86 (512)
73 KOG2804 consensus 92.9 0.14 3.6E-06 29.5 3.8 55 8-62 69-129 (348)
74 TIGR00018 panC pantoate--beta- 90.1 0.48 1.2E-05 26.3 4.1 48 12-59 34-88 (310)
75 COG0414 PanC Panthothenate syn 88.7 1.1 2.7E-05 24.3 5.0 61 2-63 22-89 (285)
76 TIGR00398 metG methionyl-tRNA 80.7 1.4 3.5E-05 23.7 2.5 51 12-62 12-78 (573)
77 KOG4238 consensus 80.5 4.7 0.00012 20.5 8.0 41 128-168 584-625 (627)
78 PRK05912 tyrosyl-tRNA syntheta 79.1 2.7 7E-05 21.9 3.7 53 3-56 32-100 (402)
79 PRK06217 hypothetical protein; 77.2 6 0.00015 19.9 5.9 57 1-63 1-64 (185)
80 COG0143 MetG Methionyl-tRNA sy 67.5 4.8 0.00012 20.4 2.6 33 12-44 18-57 (558)
81 PRK08666 5'-methylthioadenosin 66.2 3.3 8.5E-05 21.4 1.6 36 120-157 153-191 (261)
82 PRK13354 tyrosyl-tRNA syntheta 63.1 12 0.00031 18.0 6.9 54 3-57 37-106 (405)
83 TIGR01915 npdG NADPH-dependent 60.4 4.5 0.00012 20.6 1.4 32 2-36 1-38 (233)
84 COG0528 PyrH Uridylate kinase 57.8 15 0.00039 17.4 5.4 12 30-41 45-57 (238)
85 KOG3042 consensus 55.9 12 0.0003 18.1 2.9 39 3-42 25-63 (283)
86 cd00818 IleRS_core This is the 53.9 7 0.00018 19.4 1.4 30 12-41 14-50 (339)
87 PRK09267 flavodoxin FldA; Vali 53.9 6.1 0.00016 19.8 1.2 25 1-29 1-26 (169)
88 cd00812 LeuRS_core This is the 53.7 9.7 0.00025 18.6 2.2 30 12-41 13-49 (376)
89 pfam10362 DUF2432 Cytidylyltra 53.6 7.7 0.0002 19.2 1.6 20 148-167 1-20 (26)
90 PRK10200 putative racemase; Pr 48.6 8.6 0.00022 18.9 1.2 29 1-30 1-31 (230)
91 TIGR00456 argS arginyl-tRNA sy 48.6 9.8 0.00025 18.6 1.5 15 148-162 534-548 (600)
92 PRK00133 metG methionyl-tRNA s 47.0 11 0.00028 18.2 1.6 30 12-41 15-51 (666)
93 COG1519 KdtA 3-deoxy-D-manno-o 46.8 6.8 0.00017 19.5 0.5 33 4-40 233-270 (419)
94 KOG0436 consensus 40.8 29 0.00073 15.8 3.2 30 12-41 52-88 (578)
95 COG0162 TyrS Tyrosyl-tRNA synt 39.4 30 0.00076 15.7 4.8 53 4-56 33-92 (401)
96 COG5654 Uncharacterized conser 39.0 14 0.00035 17.7 1.0 14 5-20 32-45 (163)
97 cd00817 ValRS_core This is the 38.7 19 0.00048 16.9 1.7 30 12-41 14-50 (363)
98 PRK00094 gpsA NAD(P)H-dependen 38.4 17 0.00045 17.1 1.5 31 1-36 1-31 (325)
99 pfam11868 DUF3388 Protein of u 37.3 11 0.00028 18.2 0.4 19 127-145 79-97 (192)
100 PRK00436 argC N-acetyl-gamma-g 37.1 19 0.00049 16.8 1.5 10 1-10 1-10 (345)
101 PRK12359 flavodoxin FldB; Prov 36.9 16 0.0004 17.3 1.1 24 2-29 1-25 (169)
102 COG1544 Ribosome-associated pr 35.1 18 0.00047 16.9 1.2 19 152-170 12-30 (110)
103 PRK08560 tyrosyl-tRNA syntheta 34.7 36 0.00091 15.2 5.3 25 13-37 42-69 (333)
104 PRK12268 methionyl-tRNA synthe 32.0 40 0.001 15.0 3.6 30 12-41 16-53 (558)
105 COG1794 RacX Aspartate racemas 30.8 23 0.0006 16.3 1.1 27 133-160 129-155 (230)
106 KOG0919 consensus 30.0 43 0.0011 14.8 2.6 23 136-158 198-221 (338)
107 COG0716 FldA Flavodoxins [Ener 28.9 27 0.00068 16.0 1.2 25 1-29 1-26 (151)
108 PRK13303 L-aspartate dehydroge 28.6 29 0.00075 15.7 1.3 17 148-164 244-260 (265)
109 cd00806 TrpRS_core Tryptophany 28.0 46 0.0012 14.5 4.3 25 13-37 12-39 (282)
110 PRK00081 coaE dephospho-CoA ki 27.8 30 0.00076 15.7 1.3 23 1-27 2-24 (199)
111 PRK12267 methionyl-tRNA synthe 26.9 28 0.00071 15.9 1.0 41 1-41 1-53 (644)
112 PRK02271 methylenetetrahydrome 26.4 50 0.0013 14.4 3.9 33 2-35 1-34 (324)
113 pfam09334 tRNA-synt_1g tRNA sy 26.2 50 0.0013 14.3 2.2 30 12-41 12-48 (388)
114 PRK12443 uridylate kinase; Rev 26.1 50 0.0013 14.3 3.1 33 11-43 24-58 (247)
115 PRK13304 L-aspartate dehydroge 25.6 36 0.00092 15.2 1.4 20 1-27 1-22 (265)
116 TIGR00233 trpS tryptophanyl-tR 25.6 51 0.0013 14.3 2.1 27 12-38 14-45 (366)
117 pfam00579 tRNA-synt_1b tRNA sy 25.2 52 0.0013 14.2 4.7 26 13-38 17-45 (291)
118 cd00668 Ile_Leu_Val_MetRS_core 24.8 53 0.0014 14.2 2.6 28 12-39 13-47 (334)
119 COG0026 PurK Phosphoribosylami 24.4 54 0.0014 14.1 4.1 34 1-41 1-37 (375)
120 TIGR01217 ac_ac_CoA_syn acetoa 24.0 43 0.0011 14.7 1.5 58 100-158 557-624 (676)
121 cd00671 ArgRS_core This is the 22.5 54 0.0014 14.1 1.8 16 11-26 12-29 (267)
122 COG0018 ArgS Arginyl-tRNA synt 22.1 47 0.0012 14.5 1.4 18 164-181 424-441 (577)
123 pfam11909 NdhN NADH-quinone ox 22.0 15 0.00038 17.5 -1.2 14 12-25 67-80 (154)
124 pfam00750 tRNA-synt_1d tRNA sy 21.9 56 0.0014 14.0 1.7 21 161-181 321-341 (345)
125 pfam01406 tRNA-synt_1e tRNA sy 21.7 61 0.0016 13.8 2.2 31 11-41 20-57 (301)
126 PRK03333 coaE dephospho-CoA ki 20.9 48 0.0012 14.5 1.2 22 1-26 1-22 (394)
127 PRK12285 tryptophanyl-tRNA syn 20.6 65 0.0016 13.7 4.4 46 12-57 77-126 (369)
128 cd00814 MetRS_core This is the 20.2 66 0.0017 13.6 2.2 31 10-40 11-48 (319)
129 PRK05447 1-deoxy-D-xylulose 5- 20.0 60 0.0015 13.9 1.6 15 9-23 139-153 (379)
No 1
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=100.00 E-value=1.6e-39 Score=255.64 Aligned_cols=158 Identities=42% Similarity=0.767 Sum_probs=147.8
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCC
Q ss_conf 65999658998784899999999997489799964558887665789899999999976420133554412420333332
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISFEGLAV 81 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~~~~~ 81 (182)
||+|||||||||+|+|||+++++|+++||+|+|+++.||.| +..++.++|.+|++.+....+ ...+..+..+..
T Consensus 1 Mriai~pGSFDPit~GHldii~ra~~lfD~viv~v~~Np~K-~~~f~~eeR~~mi~~~~~~~~-----nv~V~~~~gL~v 74 (159)
T PRK00168 1 MKIAIYPGSFDPITNGHLDIIERASKLFDEVIVAVAINPSK-KPLFSLEERVELIREVTAHLP-----NVEVVGFDGLLV 74 (159)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCC-CCCCCHHHHHHHHHHHHCCCC-----CEEEEECCCHHH
T ss_conf 94899472679884479999999998679999940569887-777899999999999851589-----979994365032
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHCCCHHHHHHHH
Q ss_conf 21001497079994376520124677998987647998689970685721132699999998599955839999999999
Q gi|254780181|r 82 NLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISIDADITSFVPDPVCVFLK 161 (182)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g~~i~~lVP~~V~~yIk 161 (182)
++........+++|.++..+|+++.+...+++.+.++.+++|+++++++.+||||.||++++.|+||++|||++|+++||
T Consensus 75 d~ak~~~a~~iiRGlR~~~DfeyE~~~a~~N~~l~~~ieTvfl~~~~~~~~ISSs~VRei~~~ggdi~~~VP~~V~~~lk 154 (159)
T PRK00168 75 DFAREVGATVIVRGLRAVSDFEYEFQMAGMNRKLAPEIETVFLMPSEEYSFISSSLVREVARLGGDVSHFVPPAVARALK 154 (159)
T ss_pred HHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEECHHHHHHHHHCCCCHHHHCCHHHHHHHH
T ss_conf 35776698499960564047599988999997438998889963897677453899999998499944636999999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780181|r 162 NIVI 165 (182)
Q Consensus 162 ~~~~ 165 (182)
+++.
T Consensus 155 ~k~~ 158 (159)
T PRK00168 155 AKFK 158 (159)
T ss_pred HHHC
T ss_conf 9865
No 2
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase; InterPro: IPR001980 Temperature-sensitive mutants of Escherichia coli, defective in the transfer of 3-deoxy-D-manno-octulosonic acid (KDO) from CMP-KDO to a tetraacyldisaccharide 1,4'-bisphosphate precursor of lipid A, have been used to map KDO transferase activity on the E. coli chromosome . The KDO transferase gene, designated kdtA, was shown to code for a 43kDa polypeptide. Overexpression of this single gene product greatly stimulates incorporation of two stereochemically distinct KDO residues during lipopolysaccharide biosynthesis in extracts of E. coli . From these experiments this protein was thought to play a role in lipopolysaccharide biosynthesis, however now it is annotated as phosphopantetheine adenylyltransferase (2.7.7.3 from EC), which catalyses the reversible transfer of an adenylyl group from ATP to 4'-phosphopantetheine to give dephospho-CoA (DPCOA) and pyrophosphate in the fourth (and penultimate) step of coenzyme A biosynthesis .; GO: 0004595 pantetheine-phosphate adenylyltransferase activity, 0015937 coenzyme A biosynthetic process.
Probab=100.00 E-value=5.7e-37 Score=240.38 Aligned_cols=158 Identities=42% Similarity=0.693 Sum_probs=147.4
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCC-CCCC
Q ss_conf 999658998784899999999997489799964558887665789899999999976420133554412420333-3322
Q gi|254780181|r 4 KAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISFEG-LAVN 82 (182)
Q Consensus 4 igifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~~-~~~~ 82 (182)
+|||.|||||+|+|||+|+++|+++||+|+|+++.||.| +..++.++|.+|++.+....... ..+..+..... +..+
T Consensus 1 ~A~YPGSFDP~T~GHLDiikRa~~lFDeV~Vav~~N~~K-~~~f~~eeR~~~~~~~tk~~l~~-~~NV~V~~f~~~L~Vd 78 (163)
T TIGR01510 1 IALYPGSFDPITNGHLDIIKRALKLFDEVIVAVAINPSK-KPLFSLEERVELIEDATKKHLKK-IPNVEVDVFDGRLLVD 78 (163)
T ss_pred CEECCCCCCCCCCCHHHHHHHHHHHCCEEEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHHCC-CCCEEEEECCCCEEEE
T ss_conf 955488899874363889999986221777888874889-85689899999999999997236-9814898406712121
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHH---CCCCHHHCCCHHHHHH
Q ss_conf 1001497079994376520124677998987647998689970685721132699999998---5999558399999999
Q gi|254780181|r 83 LAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLIS---IDADITSFVPDPVCVF 159 (182)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~---~g~~i~~lVP~~V~~y 159 (182)
+........+++|.++..+|++|.+...+++.|+++.+|+||.+.+++.+||||.+||.+. .|+|++.|||++|++-
T Consensus 79 ~Ak~~~a~~ivRGlR~~~DFEYE~~~~~~N~~La~eieTVFL~~~~~~~~~SSs~Vke~~~PeG~ggDv~~~VP~~V~~~ 158 (163)
T TIGR01510 79 YAKELGATFIVRGLRAVTDFEYELQMALMNQKLAPEIETVFLMASPEYAAVSSSLVKEIASPEGFGGDVSNLVPPAVAAK 158 (163)
T ss_pred EHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHH
T ss_conf 01366870898601476607899999999997557986897278722366676788875077988788101278889999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780181|r 160 LKNI 163 (182)
Q Consensus 160 Ik~~ 163 (182)
|+++
T Consensus 159 L~~k 162 (163)
T TIGR01510 159 LKAK 162 (163)
T ss_pred HHHC
T ss_conf 9851
No 3
>cd02163 PPAT_a Phosphopantetheine adenylyltransferase (PPAT) is an essential enzyme in bacteria that catalyses a rate-limiting step in coenzyme A (CoA) biosynthesis, by transferring an adenylyl group from ATP to 4'-phosphopantetheine, yielding dephospho-CoA (dPCoA). Each phosphopantetheine adenylyltransferase (PPAT) subunit displays a dinucleotide-binding fold that is structurally similar to that in class I aminoacyl-tRNA synthetases. Superposition of bound adenylyl moieties from dPCoA in PPAT and ATP in aminoacyl-tRNA synthetases suggests nucleophilic attack by the 4'-phosphopantetheine on the -phosphate of ATP. The proposed catalytic mechanism implicates transition state stabilization by PPAT without involving functional groups of the enzyme in a chemical sense in the reaction. The homologous active site attachment of ATP and the structural distribution of predicted sequence-binding motifs in PPAT classify the enzyme as belonging to the nucleotidyltransferase superfamily.
Probab=100.00 E-value=1.1e-35 Score=232.81 Aligned_cols=152 Identities=44% Similarity=0.802 Sum_probs=142.0
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCC
Q ss_conf 99658998784899999999997489799964558887665789899999999976420133554412420333332210
Q gi|254780181|r 5 AVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISFEGLAVNLA 84 (182)
Q Consensus 5 gifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (182)
|||+|||||+|+||+.++++|+++||+|+|+++.||.| +..++.++|.+|++.+.... +...+..+..+..++.
T Consensus 1 AifpGSFDP~t~GHldii~ra~~lFD~vii~i~~N~~K-~~~f~~~eR~~~i~~~~~~~-----~nV~V~~~~gl~vd~a 74 (152)
T cd02163 1 AVYPGSFDPITNGHLDIIERASRLFDEVIVAVAVNPSK-KPLFSLEERVELIREATKHL-----PNVEVVGFDGLLVDFA 74 (152)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEECCCCC-CCCCCHHHHHHHHHHHHCCC-----CCEEEEEECCHHHHHH
T ss_conf 90786779884009999999998789899996228876-76689999999999974589-----9879999676699999
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHCCCHHHHHHHHH
Q ss_conf 014970799943765201246779989876479986899706857211326999999985999558399999999999
Q gi|254780181|r 85 KDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISIDADITSFVPDPVCVFLKN 162 (182)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g~~i~~lVP~~V~~yIk~ 162 (182)
......++++|.++..+|+++.+...+++.+.++.+++|+++++++.+||||.||+.++.|+||+.|||++|+++||+
T Consensus 75 k~~~a~~ivRGlR~~~DfeyE~~~a~~Nr~L~~~IeTvfl~~~~~~~~ISSs~VRel~~~ggdi~~~VP~~V~~~lk~ 152 (152)
T cd02163 75 RKVGANVIVRGLRAVSDFEYEFQMAGMNRKLAPEIETVFLMASPEYSFISSSLVKEVASLGGDVSGFVPPAVAKALKE 152 (152)
T ss_pred HHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEHHHHHHHHHCCCCHHHHCCHHHHHHHHC
T ss_conf 976982999658640488999999999996089986899847966657618999999983999445269999999709
No 4
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=100.00 E-value=1.1e-35 Score=232.67 Aligned_cols=158 Identities=19% Similarity=0.205 Sum_probs=118.9
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH--CCCCCCCCEE----E
Q ss_conf 965999658998784899999999997489799964558887665789899999999976420--1335544124----2
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHF--IPDSSNRVSV----I 74 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~k~~~~~s~e~r~~m~~~a~~~~--~~~~~~~~~~----~ 74 (182)
|+|||||||||||||+||+.+|+++ ..+|+|+|+|+.++++++...+.+.|++|++.++... ........+. .
T Consensus 1 MkkIgifGGSFDP~H~GHl~i~~~l-~~lD~v~~iP~~~~~~~k~~~~~~~R~~M~~~ai~~~~~~~~~~~~iE~~~~~p 79 (173)
T PRK08887 1 MKKIAVFGSAFNPPSLGHKSVIESL-SHFDLVLLVPSIAHAWGKEMLDYDTRCELVDAFIKDLGLSNVQRSDLEQELYQP 79 (173)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHH-HCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEHHHHHCCCC
T ss_conf 9489997428898669899999998-758989999789885456789999999999999975588871775677543489
Q ss_pred CCCC-----CC-CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCH
Q ss_conf 0333-----33-22100149707999437652012467799898764799868997068572113269999999859995
Q gi|254780181|r 75 SFEG-----LA-VNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISIDADI 148 (182)
Q Consensus 75 ~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g~~i 148 (182)
+... +. .........++++.|.|+...|..|.++..+.+.. . +...++..+||||+||++++.|+++
T Consensus 80 ~~s~~T~~tl~~l~~~yp~~~~~~IiG~D~~~~~~~W~~~eeIl~~~----~---il~~p~~~~ISST~IR~~i~~g~~i 152 (173)
T PRK08887 80 GESVTTYALLTRLQEIYPEADITFVIGPDNFLKFAKFYKADEITQRW----S---VMACPETVPIRSTDIRNAIVNGSDI 152 (173)
T ss_pred CCCEEHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHCCHHHHHHHC----E---EEECCCCCCCCHHHHHHHHHCCCCC
T ss_conf 97477899999999978998089998678776567756989998738----1---9868888875889999999859992
Q ss_pred HHCCCHHHHHHHHHHHHH
Q ss_conf 583999999999999998
Q gi|254780181|r 149 TSFVPDPVCVFLKNIVIS 166 (182)
Q Consensus 149 ~~lVP~~V~~yIk~~~~~ 166 (182)
++|||++|++||++..+|
T Consensus 153 ~~lvp~~V~~yI~~~~LY 170 (173)
T PRK08887 153 SHLTTPGVAKLLKEEQLY 170 (173)
T ss_pred HHHCCHHHHHHHHHCCCC
T ss_conf 253998999999986898
No 5
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=100.00 E-value=1.1e-34 Score=226.74 Aligned_cols=158 Identities=42% Similarity=0.767 Sum_probs=148.8
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCC
Q ss_conf 96599965899878489999999999748979996455888766578989999999997642013355441242033333
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISFEGLA 80 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~~~~ 80 (182)
||++|+|.|||||+|+|||+|+++|+.+||+|++.++.||.| ++.+|.++|.+|++.+....++ ..+.....+.
T Consensus 1 ~~~iavypGSFDPiTnGHlDii~RA~~~Fd~viVaV~~np~K-~plFsleER~~l~~~~~~~l~n-----V~V~~f~~Ll 74 (159)
T COG0669 1 MMKIAVYPGSFDPITNGHLDIIKRASALFDEVIVAVAINPSK-KPLFSLEERVELIREATKHLPN-----VEVVGFSGLL 74 (159)
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHCCEEEEEEEECCCC-CCCCCHHHHHHHHHHHHCCCCC-----EEEEECCCHH
T ss_conf 970588389879986651999999997406799999857986-7685899999999998637996-----4998424189
Q ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHCCCHHHHHHH
Q ss_conf 22100149707999437652012467799898764799868997068572113269999999859995583999999999
Q gi|254780181|r 81 VNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISIDADITSFVPDPVCVFL 160 (182)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g~~i~~lVP~~V~~yI 160 (182)
.++........+++|.+...+|+++.+...+++.+.++.+++|+.+.+++.+||||.+|+..+.|+|++.|||++|++.+
T Consensus 75 vd~ak~~~a~~ivRGLR~~sDfeYE~qma~~N~~L~~eveTvFl~~s~~~~~iSSs~Vreia~~ggdvs~~VP~~V~~~l 154 (159)
T COG0669 75 VDYAKKLGATVLVRGLRAVSDFEYELQMAHMNRKLAPEVETVFLMPSPEYSFISSSLVREIAAFGGDVSEFVPEAVARAL 154 (159)
T ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEHHHHHHHHHHHHHCCCCHHHCCHHHHHHH
T ss_conf 99999859978987234563189999999999862565547994487550010079999999847980132899999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780181|r 161 KNIV 164 (182)
Q Consensus 161 k~~~ 164 (182)
+++.
T Consensus 155 ~~k~ 158 (159)
T COG0669 155 RAKF 158 (159)
T ss_pred HHHH
T ss_conf 9860
No 6
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=100.00 E-value=1.4e-34 Score=226.18 Aligned_cols=165 Identities=16% Similarity=0.186 Sum_probs=122.8
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHC--CEEEEECCC-CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEC--
Q ss_conf 96599965899878489999999999748--979996455-8887665789899999999976420133554412420--
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHMDIIIQALSFV--EDLVIAIGC-NSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVIS-- 75 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL~ia~~a~~~~--D~vii~~~~-~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~-- 75 (182)
|||||||||||||||+||+.+|++|++.+ |+|+++|+. +|+|++..++.++|.+|++.++........+..+...
T Consensus 1 m~kI~ifgGSFdP~h~gH~~i~~~~~~~~~~d~v~~~p~~~~~~K~~~~~~~~~R~~Ml~~a~~~~~~~~v~~~E~~~~~ 80 (200)
T PRK00071 1 MMRIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGPPHKPRPLAPLEHRLAMLELAIADNPRFSVSDIELERLG 80 (200)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHCCC
T ss_conf 98699957676857499999999999975999899998899866567789999999999998875897278640332467
Q ss_pred --CCCCCCCCC---CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC-----------------------CCCCEEEEECC
Q ss_conf --333332210---01497079994376520124677998987647-----------------------99868997068
Q gi|254780181|r 76 --FEGLAVNLA---KDISAQVIVRGLRDMTDFDYEMRMTSVNRCLC-----------------------PEIATIALFAK 127 (182)
Q Consensus 76 --~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----------------------~~~~~i~l~~~ 127 (182)
++..+.... .....++++.|.|....+..|.++..+.+... .....+.+ .+
T Consensus 81 ~syt~~tl~~l~~~~~~~~~~~iiG~D~l~~~~~W~~~~~il~~~~~iV~~R~g~~~~~~~~~~~~~~~~~~~~i~~-~~ 159 (200)
T PRK00071 81 PSYTIDTLRELRARYPDVEFVFIIGADALAQLPRWKRWEEILSLVHFVVVPRPGYPEARLDEDPAALLARPGGPIWL-LD 159 (200)
T ss_pred CCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE-EC
T ss_conf 62189999999987899747984070787651546459999964979999489985233455588874144882999-56
Q ss_pred CCCCCCCHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
Q ss_conf 572113269999999859995583999999999999998
Q gi|254780181|r 128 ESSRYVTSTLIRHLISIDADITSFVPDPVCVFLKNIVIS 166 (182)
Q Consensus 128 ~~~~~ISST~IR~~i~~g~~i~~lVP~~V~~yIk~~~~~ 166 (182)
.+..+||||+||++++.|++|++|||++|.+||++..+|
T Consensus 160 ~~~~~iSST~IR~~l~~g~~i~~lvp~~V~~YI~~~~LY 198 (200)
T PRK00071 160 VPLLAISSTAIRERIKEGKSVRYLLPEAVLDYIEKHGLY 198 (200)
T ss_pred CCCCCCCHHHHHHHHHCCCCCHHHCCHHHHHHHHHCCCC
T ss_conf 987764899999999859993230899999999986797
No 7
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=99.98 E-value=2e-31 Score=207.30 Aligned_cols=167 Identities=17% Similarity=0.197 Sum_probs=126.3
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHC--CEEEEECCC-CCCCC-CCCCCHHHHHHHHHHHHHHHCCCCCCCCEE---
Q ss_conf 96599965899878489999999999748--979996455-88876-657898999999999764201335544124---
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHMDIIIQALSFV--EDLVIAIGC-NSVKT-KGFLSIQERSELIKQSIFHFIPDSSNRVSV--- 73 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL~ia~~a~~~~--D~vii~~~~-~p~k~-~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~--- 73 (182)
|||||||||||||+|+||+.+|++|++.+ |+|+++|.. +|+|. +...|.++|..|++.|++.......+..+.
T Consensus 2 ~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~~p~k~~~~~a~~~~R~~Ml~la~~~~~~~~v~~~e~~r~ 81 (197)
T COG1057 2 MKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPVPPHKKKKELASAEHRLAMLELAIEDNPRFEVSDREIKRG 81 (197)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEHHHHHCC
T ss_conf 84699961389998789999999999874988799944898977776667999999999999982599761319999757
Q ss_pred -ECCCCCCCCCC----CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC------CCC-------C---EEEEECCCCCCC
Q ss_conf -20333332210----01497079994376520124677998987647------998-------6---899706857211
Q gi|254780181|r 74 -ISFEGLAVNLA----KDISAQVIVRGLRDMTDFDYEMRMTSVNRCLC------PEI-------A---TIALFAKESSRY 132 (182)
Q Consensus 74 -~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~-------~---~i~l~~~~~~~~ 132 (182)
.+++..+.... .....++++.|.|+...+..|..|..+..... +.. . ......+.+...
T Consensus 82 g~sYT~dTl~~~~~~~~p~~~~~fIiGaD~l~~l~~W~~~~ell~~~~~vv~~Rp~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (197)
T COG1057 82 GPSYTIDTLEHLRQEYGPDVELYFIIGADNLASLPKWYDWDELLKLVTFVVAPRPGYGELELSLLSSGGAIILLDLPRLD 161 (197)
T ss_pred CCCEEHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 99660999999999858998589997047750435134599999739799995677404304443368628972586444
Q ss_pred CCHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHH
Q ss_conf 32699999998599955839999999999999986
Q gi|254780181|r 133 VTSTLIRHLISIDADITSFVPDPVCVFLKNIVISL 167 (182)
Q Consensus 133 ISST~IR~~i~~g~~i~~lVP~~V~~yIk~~~~~~ 167 (182)
||||+||++++.|+++.++||++|.+||++..+|.
T Consensus 162 ISSt~IR~~~~~~~~~~~llP~~V~~YI~~~~LY~ 196 (197)
T COG1057 162 ISSTEIRERIRRGASVDYLLPDSVLSYIEERGLYR 196 (197)
T ss_pred CCHHHHHHHHHCCCCCHHCCCHHHHHHHHHHCCCC
T ss_conf 74699999985799703018989999999855335
No 8
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=99.97 E-value=1.1e-30 Score=203.01 Aligned_cols=162 Identities=19% Similarity=0.243 Sum_probs=119.3
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHH--CCEEEEECCC-CCCCCCC-CCCHHHHHHHHHHHHHHHCCCCCCCCEEE---
Q ss_conf 659996589987848999999999974--8979996455-8887665-78989999999997642013355441242---
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSF--VEDLVIAIGC-NSVKTKG-FLSIQERSELIKQSIFHFIPDSSNRVSVI--- 74 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~--~D~vii~~~~-~p~k~~~-~~s~e~r~~m~~~a~~~~~~~~~~~~~~~--- 74 (182)
||||||||||||||+||+.+|++|++. +|+||++|+. ||+|... ..+.++|++|++.|+...+....+..+..
T Consensus 1 MkIgifGGSFDPiH~GHl~ia~~~~~~~~lDkv~~vPt~~~P~K~~~~~~~~~~Rl~Ml~la~~~~~~~~v~d~Ei~~~~ 80 (343)
T PRK07152 1 MKIAIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYINPFKKKNKTSNGKDRLNMLKLALKNLPKIEVSDFEIKRQN 80 (343)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEHHHCCC
T ss_conf 97999631778767999999999999809898999987979999999999999999999999637997599702965799
Q ss_pred -CCCCCCCCCC---CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC------C---C----CCEEEEECCCCCCCCCHHH
Q ss_conf -0333332210---01497079994376520124677998987647------9---9----8689970685721132699
Q gi|254780181|r 75 -SFEGLAVNLA---KDISAQVIVRGLRDMTDFDYEMRMTSVNRCLC------P---E----IATIALFAKESSRYVTSTL 137 (182)
Q Consensus 75 -~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~---~----~~~i~l~~~~~~~~ISST~ 137 (182)
+++..+.... .....++++.|.++...|..|.+|+.+.+... . + ...-++..+.+..++|||+
T Consensus 81 ~sYTidTl~~lk~~yp~~~~~fIiG~D~l~~~~~W~~~e~I~~~~~~vV~~R~~~~~~~~~~ky~~~~l~~~~~~~SSt~ 160 (343)
T PRK07152 81 VSYTIDTINYFKKKYPNDEIYFIIGSDNLENFKKWKNIEEILKKVQIVVFKRTKNINKINIKKYNFLLLKNKNLNISSTK 160 (343)
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEECHHHHHHCCCCCCHHHHHHHCCEEEEECCCCHHHHHHHCCCEEEECCCCCCCCHHH
T ss_conf 82599999999987899979999637865233133699999983979999899832221343178188568888876498
Q ss_pred HHHHHHCCCCHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 9999985999558399999999999999865
Q gi|254780181|r 138 IRHLISIDADITSFVPDPVCVFLKNIVISLV 168 (182)
Q Consensus 138 IR~~i~~g~~i~~lVP~~V~~yIk~~~~~~~ 168 (182)
||+ +....+||+.|.+||.+..+|+.
T Consensus 161 iR~-----~~~~~~~~~~V~~YI~~n~LY~~ 186 (343)
T PRK07152 161 IRN-----KGNLSLLDPKVLDYINENGLYAY 186 (343)
T ss_pred HHC-----CCCCCCCCHHHHHHHHHCCCEEH
T ss_conf 866-----78702189899999974676101
No 9
>cd02165 NMNAT This family contains the predominant bacterial/eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT) is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and thus can participate in both de novo and salvage pathways of NAD synthesis.
Probab=99.97 E-value=5.7e-30 Score=198.70 Aligned_cols=161 Identities=16% Similarity=0.191 Sum_probs=117.2
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHC--CEEEEECCCC-CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEC----CC
Q ss_conf 9965899878489999999999748--9799964558-887665789899999999976420133554412420----33
Q gi|254780181|r 5 AVYTGSFDPITNGHMDIIIQALSFV--EDLVIAIGCN-SVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVIS----FE 77 (182)
Q Consensus 5 gifgGsFdPiH~GHL~ia~~a~~~~--D~vii~~~~~-p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~----~~ 77 (182)
|||||||||||+||+.+++.|++.+ |+|+++|+.+ |.|.....+.++|.+|++.|+........+..+... ++
T Consensus 1 aifgGSFdP~h~gH~~i~~~~~~~~~~d~v~~ip~~~~~~K~~~~~~~~~R~~Ml~~a~~~~~~~~v~~~E~~~~~~s~t 80 (194)
T cd02165 1 ALFGGSFNPPHNGHLALAEEAREQLGLDKVILLPSANPPHKKPGLASAEHRLAMLELAIEGSPRFEVSDWEIERPGPSYT 80 (194)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEECHHHHHCCCCCCH
T ss_conf 92456688475999999999999749998999980888564678899999999999999758976430366637898708
Q ss_pred CCCCCC---CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC----------------------CCCCEEEEECCCCCCC
Q ss_conf 333221---001497079994376520124677998987647----------------------9986899706857211
Q gi|254780181|r 78 GLAVNL---AKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLC----------------------PEIATIALFAKESSRY 132 (182)
Q Consensus 78 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------------------~~~~~i~l~~~~~~~~ 132 (182)
..+... ......++++.|.|....+..|..+..+.+... ......+.....+..+
T Consensus 81 ~~tl~~l~~~~~~~~~~~iiG~D~l~~~~~W~~~~~i~~~~~~iv~~R~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 160 (194)
T cd02165 81 IDTLRHLRERYPNAELYFLIGADLLENLPKWKDWEEILELVHLVVVPRPGYDIDSEILELDLLLKAPGGRILLLDNPPLD 160 (194)
T ss_pred HHHHHHHHHHCCCCCEEEEECHHHHHCCCCCCCHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 99999998658987089972556664034411799999649899996899971244578898740678769993698777
Q ss_pred CCHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHH
Q ss_conf 326999999985999558399999999999999
Q gi|254780181|r 133 VTSTLIRHLISIDADITSFVPDPVCVFLKNIVI 165 (182)
Q Consensus 133 ISST~IR~~i~~g~~i~~lVP~~V~~yIk~~~~ 165 (182)
||||+||++++.|++|+++||++|.+||++..+
T Consensus 161 ISST~IR~~i~~~~~i~~lvp~~V~~yI~~~~L 193 (194)
T cd02165 161 ISSTKIREALARGKSIRYLVPDSVLDYILEHGL 193 (194)
T ss_pred CCHHHHHHHHHCCCCHHHHCCHHHHHHHHHCCC
T ss_conf 189999999985998246079999999998689
No 10
>TIGR00482 TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase; InterPro: IPR005248 This family contains the predominant bacterial/eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. Nicotinamide-nucleotide adenylyltransferase (2.7.7.1 from EC) synthesizes NAD by the salvage pathway, while nicotinate-nucleotide adenylyltransferase (2.7.7.18 from EC) synthesizes the immediate precursor of NAD by the de novo pathway. ; GO: 0016779 nucleotidyltransferase activity, 0009435 NAD biosynthetic process.
Probab=99.96 E-value=7.2e-30 Score=198.10 Aligned_cols=161 Identities=19% Similarity=0.236 Sum_probs=118.8
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHC--CEEEEECCCCC-CCC-CCCCC----HHHHHHHHHHHHHH--HCCCCCCCCEEEC
Q ss_conf 965899878489999999999748--97999645588-876-65789----89999999997642--0133554412420
Q gi|254780181|r 6 VYTGSFDPITNGHMDIIIQALSFV--EDLVIAIGCNS-VKT-KGFLS----IQERSELIKQSIFH--FIPDSSNRVSVIS 75 (182)
Q Consensus 6 ifgGsFdPiH~GHL~ia~~a~~~~--D~vii~~~~~p-~k~-~~~~s----~e~r~~m~~~a~~~--~~~~~~~~~~~~~ 75 (182)
||||||||||+||+.+|++|++.+ |+|+|+|+.+| +|. ....+ .++|..|+++|+.. .+.+..+..+...
T Consensus 1 lfGGsFdP~H~GHl~~a~~~~~~~~~~~~~~vP~~~pP~K~~~~~~~~lA~~~~R~~Ml~lA~~~~T~~~~~v~~~E~~~ 80 (229)
T TIGR00482 1 LFGGSFDPIHYGHLLLAEEALEALDLDKVIFVPTFNPPHKKTEELASDLASSEHRLAMLKLAIENETNPKFEVSDFEIKR 80 (229)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEHHHHHC
T ss_conf 98887787779999999999987089779995077777677877774433289999999999973478851440668870
Q ss_pred C---------CCCCCCCC----CCCCC--EEEEEECCCCCCHH--HHH--HHHHHHHHHC--------------------
Q ss_conf 3---------33332210----01497--07999437652012--467--7998987647--------------------
Q gi|254780181|r 76 F---------EGLAVNLA----KDISA--QVIVRGLRDMTDFD--YEM--RMTSVNRCLC-------------------- 116 (182)
Q Consensus 76 ~---------~~~~~~~~----~~~~~--~~~~~~~~~~~~~~--~~~--~~~~~~~~l~-------------------- 116 (182)
. ......+. ..... ++++.|.|....|. .|. .+..+.....
T Consensus 81 ~~~~YT~~Tl~~~~~~~~~GA~~~~~~~kl~fiiG~D~l~~~~PN~W~DA~~~~l~~~~~lv~~~R~g~~~~~~~~~~~~ 160 (229)
T TIGR00482 81 GGPSYTIDTLKHLKKKYPGGAVTPDSEVKLYFIIGADALRSFPPNKWKDADWEELLELVELVVVPRPGYELDKALLEKAI 160 (229)
T ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCHHHHH
T ss_conf 79753189999999984898637788962799846211411788886455678786327677872687434443047899
Q ss_pred --------C---------CCCEEEEECC--CCCCCCCHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
Q ss_conf --------9---------9868997068--572113269999999859995583999999999999998
Q gi|254780181|r 117 --------P---------EIATIALFAK--ESSRYVTSTLIRHLISIDADITSFVPDPVCVFLKNIVIS 166 (182)
Q Consensus 117 --------~---------~~~~i~l~~~--~~~~~ISST~IR~~i~~g~~i~~lVP~~V~~yIk~~~~~ 166 (182)
. ....+.+... .+...||||+||+++..|++|++|||+.|.+||++..+|
T Consensus 161 ~~~~~~~~~~~~~L~~r~~~~~~~~~~~~~~p~~~ISSt~IR~~~~~g~~~~yL~P~~V~~YI~~~~LY 229 (229)
T TIGR00482 161 QLLKSRLDQLPADLKLRTHKRNLVLLEGDVLPRVNISSTEIRKRIREGKSIEYLLPEPVLKYIKEHGLY 229 (229)
T ss_pred HHHHHHHCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 987754036815777403544202136651245210278999998758973113797899999973389
No 11
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.96 E-value=5e-29 Score=193.10 Aligned_cols=139 Identities=32% Similarity=0.516 Sum_probs=125.8
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCC
Q ss_conf 65999658998784899999999997489799964558887665789899999999976420133554412420333332
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISFEGLAV 81 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~~~~~ 81 (182)
||+|||+|||||+|+||++++++|+++||+|+|+++.||.|. ..++.++|.+|++.+.....+.. .......+..
T Consensus 1 Mk~aiypGSFDPiT~GHlDIi~RA~~lFD~viV~V~~N~~K~-~lfs~eeR~~~i~~~~~~~~nv~----V~~~~~gL~v 75 (140)
T PRK13964 1 MKIAIYPGSFDPFHNGHINILKKALKLFDKVYVVVSINPDKS-LDTDIDSRFTNIKNKIKDFDNVE----VLINEDKLTA 75 (140)
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCC-CCCCHHHHHHHHHHHHHCCCCCE----EEECCCCCHH
T ss_conf 968997988798854289999999986898999884279998-89999998898999975469968----9723786399
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCC
Q ss_conf 2100149707999437652012467799898764799868997068572113269999999859
Q gi|254780181|r 82 NLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISID 145 (182)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g 145 (182)
++........+++|.++..+|+++.+...+++.+.++.+++|+++++++.+||||.|||....+
T Consensus 76 d~a~~~~a~~ivRGlR~~~DfeyE~~mA~~Nr~l~~~IETvFl~~~~~~~~iSSslVrEia~lk 139 (140)
T PRK13964 76 EIAKKLGANFIIRSARNQIDFQYEIVLAAGNKSLNPNLETILIMPDYDKIEYSSTLLRHIKFLK 139 (140)
T ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEHHHHHHHHHHC
T ss_conf 9999869999996798751089999999999852899758997589777375379999999753
No 12
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.95 E-value=1e-26 Score=179.27 Aligned_cols=149 Identities=23% Similarity=0.269 Sum_probs=98.5
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCC--CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCE----EEC
Q ss_conf 65999658998784899999999997489799964558--887665789899999999976420133554412----420
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCN--SVKTKGFLSIQERSELIKQSIFHFIPDSSNRVS----VIS 75 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~--p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~----~~~ 75 (182)
|| |||+|||||+|+|||.++++|++.+|+|+|+++++ ++..+.+++.++|.+|++.+............. ...
T Consensus 1 Mr-~~~~GrFqP~H~GHl~~i~~al~~~d~vii~Igsa~~~~~~~NPft~~ER~~Mi~~~L~~~~i~~~~~~iv~i~di~ 79 (170)
T PRK01153 1 MR-ALFIGRFQPFHKGHLEVIKWILEEVDELIIGIGSAQESHTLKNPFTAGERIMMIRKALEEAGIDLSRYYIIPIPDIE 79 (170)
T ss_pred CE-EEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 92-79971659986789999999997389259995566557778999889999999999999759875508999636544
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH--CCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHCCC
Q ss_conf 3333322100149707999437652012467799898764--79986899706857211326999999985999558399
Q gi|254780181|r 76 FEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCL--CPEIATIALFAKESSRYVTSTLIRHLISIDADITSFVP 153 (182)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~i~l~~~~~~~~ISST~IR~~i~~g~~i~~lVP 153 (182)
....+..+.......+......+. ....+ ..+.++.. .+......+|||.||+++..|++|+.|||
T Consensus 80 ~~~~wv~~v~~~~~~f~~~~s~n~-----------~~~~lf~~~g~~v~~-~p~~~r~~~Sst~IR~~~~~g~~w~~lVP 147 (170)
T PRK01153 80 FNAVWVSHVESLTPPFDVVYTGNP-----------LVAQLFREAGYEVRQ-PPMFNRDEYSGTEIRRRMIEGDPWEELVP 147 (170)
T ss_pred CHHHHHHHHHHHCCCEEEEEECCH-----------HHHHHHHHCCCEEEE-CCCCCCCCEEHHHHHHHHHCCCCHHHHCC
T ss_conf 077899999985898369984878-----------999986644976982-68645673037999999986998568589
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780181|r 154 DPVCVFLKNI 163 (182)
Q Consensus 154 ~~V~~yIk~~ 163 (182)
++|++||+++
T Consensus 148 ~~Va~~i~e~ 157 (170)
T PRK01153 148 KSVAEVIKEI 157 (170)
T ss_pred HHHHHHHHHC
T ss_conf 9999999994
No 13
>cd02166 NMNAT_Archaea This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=99.93 E-value=2.4e-25 Score=171.15 Aligned_cols=148 Identities=25% Similarity=0.281 Sum_probs=97.9
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCC--CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEE----ECCCC
Q ss_conf 99658998784899999999997489799964558--8876657898999999999764201335544124----20333
Q gi|254780181|r 5 AVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCN--SVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSV----ISFEG 78 (182)
Q Consensus 5 gifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~--p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~----~~~~~ 78 (182)
|||.|||||+|+|||.++++|++.+|+|+|+++++ ++..++++|.++|.+|++.+.............. .....
T Consensus 2 ~~~~GrFqP~h~GHl~~i~~a~~~~d~~ii~igs~~~~~~~~NPft~~ER~~Mi~~al~~~~~~~~~~~ivpi~Di~~~~ 81 (163)
T cd02166 2 ALFIGRFQPFHLGHLQVIKWILEEVDELIIGIGSAQESHTLRNPFTAGERVLMIRKALEEAGIDLSRYYIIPVPDIETNA 81 (163)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHH
T ss_conf 45870459986789999999997489279997778667778899889999999999999669876518998566544077
Q ss_pred CCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHCCCHHHH
Q ss_conf 3322100149707999437652012467799898764-799868997068572113269999999859995583999999
Q gi|254780181|r 79 LAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCL-CPEIATIALFAKESSRYVTSTLIRHLISIDADITSFVPDPVC 157 (182)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~i~l~~~~~~~~ISST~IR~~i~~g~~i~~lVP~~V~ 157 (182)
.+..+.......+......+.. +.... ....+.. ..+......+|||.||++++.|++|+.|||++|+
T Consensus 82 ~wv~~v~~~~p~~~~~~s~~~~----------v~~lf~~~g~~V~-~~p~~~r~~~SsT~IR~~~~~g~~w~~lVP~~Va 150 (163)
T cd02166 82 LWVGYVKSLTPPFDVVYSGNPL----------VARLFKEAGYEVR-RPPMFNRDEYSGTEIRRLMLGDEDWESLVPKSVA 150 (163)
T ss_pred HHHHHHHHHCCCEEEEEECCHH----------HHHHHHHCCCEEE-CCCCCCCCCCCHHHHHHHHHCCCCHHHHCCHHHH
T ss_conf 8999999738972799818789----------9998888199286-4675246755389999999869985683999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780181|r 158 VFLKNI 163 (182)
Q Consensus 158 ~yIk~~ 163 (182)
+||+|+
T Consensus 151 ~~i~ei 156 (163)
T cd02166 151 EVIDEI 156 (163)
T ss_pred HHHHHC
T ss_conf 999983
No 14
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase; InterPro: IPR006418 This family of archaeal proteins exhibits NAD salvage biosynthesis enzyme nicotinamide-nucleotide adenylyltransferase (2.7.7.1 from EC) activity. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase (2.7.7.18 from EC), an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterised with respect to activity, are also present.; GO: 0000309 nicotinamide-nucleotide adenylyltransferase activity, 0009435 NAD biosynthetic process, 0005737 cytoplasm.
Probab=99.92 E-value=2.5e-25 Score=171.04 Aligned_cols=149 Identities=21% Similarity=0.308 Sum_probs=114.6
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCC--CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-------CEEEC
Q ss_conf 99658998784899999999997489799964558--8876657898999999999764201335544-------12420
Q gi|254780181|r 5 AVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCN--SVKTKGFLSIQERSELIKQSIFHFIPDSSNR-------VSVIS 75 (182)
Q Consensus 5 gifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~--p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~-------~~~~~ 75 (182)
|+|.|+|||+|.||+.++++.++..||++|++|+. +|.-.+++|+-+|.+|+..|........... .....
T Consensus 2 Gfy~GRFQPFH~GH~~Vik~~l~~VDELiiGiGSAq~SHt~~NPFTAGERv~MI~~sl~~~~rel~~d~~~Y~iP~~Di~ 81 (171)
T TIGR01527 2 GFYIGRFQPFHLGHLEVIKKILEEVDELIIGIGSAQESHTLENPFTAGERVLMITKSLKEVKRELMDDLKVYIIPIEDIE 81 (171)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCHHHHH
T ss_conf 73467768755213799998873547779874048862022289761307899999999865544221322111424453
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCC-HHHCCCH
Q ss_conf 333332210014970799943765201246779989876479986899706857211326999999985999-5583999
Q gi|254780181|r 76 FEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISIDAD-ITSFVPD 154 (182)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g~~-i~~lVP~ 154 (182)
.+..|..+....++.+.+.+..++.-.......-. .+..--++.+..| +||+||.++..|+| |+.|||+
T Consensus 82 ~N~iWv~yV~s~~PkFevvY~~NPLV~rLF~EaGy-------~V~~p~mfnR~~y---~gteIRR~m~~gednWe~lVP~ 151 (171)
T TIGR01527 82 RNSIWVSYVESMTPKFEVVYSNNPLVVRLFKEAGY-------KVKRPPMFNREEY---EGTEIRRRMLEGEDNWEELVPK 151 (171)
T ss_pred HHHHHHHEECCCCCCCEEEECCCCEEEEEECCCCE-------EECCCCCCCCCCC---CCHHHHHHHHCCCCCCHHCCCH
T ss_conf 40100000004889840687387847875401531-------5438887576654---5256666655288650131773
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780181|r 155 PVCVFLKNI 163 (182)
Q Consensus 155 ~V~~yIk~~ 163 (182)
+|+++|+|+
T Consensus 152 aV~~~i~EI 160 (171)
T TIGR01527 152 AVADVIKEI 160 (171)
T ss_pred HHHHHHHHC
T ss_conf 143532304
No 15
>pfam01467 CTP_transf_2 Cytidylyltransferase. This family includes: Cholinephosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase.
Probab=99.85 E-value=9.6e-22 Score=149.70 Aligned_cols=122 Identities=18% Similarity=0.172 Sum_probs=84.0
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHC--CEEEEECCCCC-CCCC-CCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCC
Q ss_conf 965899878489999999999748--97999645588-8766-5789899999999976420133554412420333332
Q gi|254780181|r 6 VYTGSFDPITNGHMDIIIQALSFV--EDLVIAIGCNS-VKTK-GFLSIQERSELIKQSIFHFIPDSSNRVSVISFEGLAV 81 (182)
Q Consensus 6 ifgGsFdPiH~GHL~ia~~a~~~~--D~vii~~~~~p-~k~~-~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~~~~~ 81 (182)
||||||||+|+||+.+|++|++.+ |+|+++|+.+| +|.+ ...+.++|.+|++.+............+
T Consensus 1 i~gGsFdP~H~GHl~i~~~a~~~~~~d~v~~ip~~~~p~k~~~~~~~~~~R~~ml~~a~~~~~~~~v~~~e--------- 71 (148)
T pfam01467 1 LFGGTFDPIHLGHLRLLEQAKELFDLDKIVGVPSDESPHKDTKNLFSAEERLEMLELALEVDPNLEVDDFE--------- 71 (148)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECH---------
T ss_conf 97725798879999999999997699879999767656667888899999999999998239976997330---------
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC----------------------CCCCEEEEECCCCCCCCCHHHHH
Q ss_conf 21001497079994376520124677998987647----------------------99868997068572113269999
Q gi|254780181|r 82 NLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLC----------------------PEIATIALFAKESSRYVTSTLIR 139 (182)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------------------~~~~~i~l~~~~~~~~ISST~IR 139 (182)
....+++.|.+....+..|..+..+..... ..........+.+..+||||+||
T Consensus 72 -----~~~~~~i~G~D~~~~~~~W~~~~~i~~~~~~~v~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR 146 (148)
T pfam01467 72 -----DLDVYFIIGADALVNLRGWRGVTELLPEFQIVVVNRPLDYGLETVFLREELDKYPLGKIVIPDLPYNDISSTEIR 146 (148)
T ss_pred -----HHHHHHHHCCCHHHHCCCCCCHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHC
T ss_conf -----267899984990554488787999995077899828999750123413344323577379787875764828862
Q ss_pred HH
Q ss_conf 99
Q gi|254780181|r 140 HL 141 (182)
Q Consensus 140 ~~ 141 (182)
++
T Consensus 147 ~r 148 (148)
T pfam01467 147 ER 148 (148)
T ss_pred CC
T ss_conf 97
No 16
>cd02168 NMNAT_Nudix This domain represents the N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and #Nudix' hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=99.83 E-value=1.5e-20 Score=142.57 Aligned_cols=148 Identities=21% Similarity=0.231 Sum_probs=91.0
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCC--CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECC--C-CC
Q ss_conf 99658998784899999999997489799964558--8876657898999999999764201335544124203--3-33
Q gi|254780181|r 5 AVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCN--SVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISF--E-GL 79 (182)
Q Consensus 5 gifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~--p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~--~-~~ 79 (182)
.+|.|+|||+|+|||.++++|++.+|+|+|++|+. ++..+.++|+++|.+|++.+...............+. . ..
T Consensus 1 ~v~iGRFqPfH~GHl~~i~~al~~~~~vii~iGSa~~~~~~~nPft~~ER~~Mi~~~l~~~d~~R~~~~pv~D~~yn~~~ 80 (179)
T cd02168 1 LVYIGRFQPFHLGHLQVIRIALEQAREVIILIGSARTARNIKNPWTSEEREQMIRAALSDEDLARVHFRPLRDHLYNDNL 80 (179)
T ss_pred CCEEECCCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCHHCCCEEEEEECCCCCCCHHH
T ss_conf 91624689985789999999996389379999688999988999899999999999705641875999978888888799
Q ss_pred CCCCCCCCC-------CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCC---CHH
Q ss_conf 322100149-------7079994376520124677998987647998689970685721132699999998599---955
Q gi|254780181|r 80 AVNLAKDIS-------AQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISIDA---DIT 149 (182)
Q Consensus 80 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g~---~i~ 149 (182)
|........ ...-+.|-... ....+. .+.|+.+.+- -+.+..+|+|.||+++..|+ +|+
T Consensus 81 Wv~~V~~~V~~~~~~~~~v~lvg~~kd-------~ssyyl-~~FP~w~~v~---~~~~~~~saT~IR~~~~~g~~~~~w~ 149 (179)
T cd02168 81 WVADVQQKVLAIAGPEASIGLIGHRKD-------ESSYYL-RLFPQWDYVE---VPNYSDLSATDIRDAYFEGSKEAMYA 149 (179)
T ss_pred HHHHHHHHCCCCCCCCCCCEEEEEEEC-------CCCEEE-ECCCCCCEEE---CCCCCCCCCHHHHHHHHCCCCCCCHH
T ss_conf 999999957611368987058888606-------753255-5067863443---67657667559999998688532224
Q ss_pred HCCCHHHHHHHHHH
Q ss_conf 83999999999999
Q gi|254780181|r 150 SFVPDPVCVFLKNI 163 (182)
Q Consensus 150 ~lVP~~V~~yIk~~ 163 (182)
.+||++|++||++.
T Consensus 150 ~~VP~~V~~~L~~~ 163 (179)
T cd02168 150 NGLPPGVYDFLTAF 163 (179)
T ss_pred HCCCHHHHHHHHHH
T ss_conf 50998999999995
No 17
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.80 E-value=2.5e-19 Score=135.27 Aligned_cols=156 Identities=20% Similarity=0.169 Sum_probs=88.7
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCC--CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEE--ECCCCC
Q ss_conf 99965899878489999999999748979996455--88876657898999999999764201335544124--203333
Q gi|254780181|r 4 KAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGC--NSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSV--ISFEGL 79 (182)
Q Consensus 4 igifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~--~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~--~~~~~~ 79 (182)
.++|.|+|||+|+||+.++++|++..|+|++++|+ .++..++++++++|.+|+..+.............. ......
T Consensus 6 ~~v~iGRFQPfH~GHl~~i~~al~~~~~vii~iGSa~~~~~~~NPft~~ER~~Mi~~~l~~~~~~rv~~~pi~D~yn~~~ 85 (188)
T PRK13793 6 YLVFIGRFQPFHLAHMQTIEIALQQSRYVILALGSAQMERNIKNPFLAIEREQMILSNFSLDEQKRIRFVHVVDVYNDEK 85 (188)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCHHHCCEEEEECCCCCCCHHH
T ss_conf 69998778986478999999999718938999707898988899989899999999855875537389970676563489
Q ss_pred CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCC-CCCHHHHHHHHHCCCCHHHCCCHHHHH
Q ss_conf 3221001497079994376520124677998987647998689970685721-132699999998599955839999999
Q gi|254780181|r 80 AVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSR-YVTSTLIRHLISIDADITSFVPDPVCV 158 (182)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~-~ISST~IR~~i~~g~~i~~lVP~~V~~ 158 (182)
|..........+...+......-..-....... .+.|+...+ ....+. .+|+|+||+++..|+.|+.+||++|.+
T Consensus 86 Wv~~Vq~~v~~~~~~~~~i~LVGh~KDesSyyL-r~FP~W~~v---~~~~~~~~~SaT~IR~~~~~g~~~~~~vP~~V~~ 161 (188)
T PRK13793 86 WVKQVKSLVNGVIEPNSKVGLIGHFKDESSYYL-RLFPEWVMV---ELDSLKDSISATPMREAYYQGKIKTDAFPKGTIQ 161 (188)
T ss_pred HHHHHHHHCCCCCCCCCCCCEEEEECCCCCCEE-ECCCCCCCC---CCCCCCCCCCCHHHHHHHHCCCCCHHCCCHHHHH
T ss_conf 999999966343567887306776206665132-248876533---4644457757459999997698403108989999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780181|r 159 FLKNI 163 (182)
Q Consensus 159 yIk~~ 163 (182)
+|++.
T Consensus 162 ~L~~F 166 (188)
T PRK13793 162 FLEEF 166 (188)
T ss_pred HHHHH
T ss_conf 99998
No 18
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.72 E-value=1.3e-17 Score=125.17 Aligned_cols=139 Identities=10% Similarity=0.051 Sum_probs=96.0
Q ss_pred HCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC----CCCCCC----CEEECCCCCCCCCCC----CCCCEEEEEE
Q ss_conf 4897999645588876657898999999999764201----335544----124203333322100----1497079994
Q gi|254780181|r 28 FVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHFI----PDSSNR----VSVISFEGLAVNLAK----DISAQVIVRG 95 (182)
Q Consensus 28 ~~D~vii~~~~~p~k~~~~~s~e~r~~m~~~a~~~~~----~~~~~~----~~~~~~~~~~~~~~~----~~~~~~~~~~ 95 (182)
.+|+|+|+|+.+|+|+....+.++|++|+++|+.... .+..+. ....+++..+..... ....++++.|
T Consensus 3 ~LD~v~fiPa~~PphK~~~~~~~~Rl~Mv~lAi~~~~~~~~~~~vs~~Ei~r~g~SYTidTL~~lr~~~~p~~~l~~IiG 82 (196)
T PRK06973 3 DLTELVLIPAGQPWQKADVSAAEHRLAMTRAAAASLVLPGVTVRVATDEIEHAGPTYTVDTLARWRERIGPDASLALLIG 82 (196)
T ss_pred CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 89989998898897989999999999999999861536798168758998689997799999999998599985899962
Q ss_pred CCCCCCHHHHHHHHHHHHHHC------CC---------------------------CCEEEEECCCCCCCCCHHHHHHHH
Q ss_conf 376520124677998987647------99---------------------------868997068572113269999999
Q gi|254780181|r 96 LRDMTDFDYEMRMTSVNRCLC------PE---------------------------IATIALFAKESSRYVTSTLIRHLI 142 (182)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~l~------~~---------------------------~~~i~l~~~~~~~~ISST~IR~~i 142 (182)
.|....+..|.+|..+.+.-. ++ ....+++......+||||+||+++
T Consensus 83 ~D~~~~l~~W~~~~~il~~~~liV~~Rpg~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~i~~~~~~~~dISST~IR~~l 162 (196)
T PRK06973 83 ADQLVRLDTWRDWRRLFDYAHLCAATRPGFDLGAASPAVAAEIAARQADADVLQATPAGRLLIDTTLAFDLSATDIRAHL 162 (196)
T ss_pred HHHHHHHHHHCCHHHHHHHCEEEEEECCCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCEEECCCCCCCCCHHHHHHHH
T ss_conf 78874444036699999748089981899774446888999999841256766238887179758877750789999999
Q ss_pred HCCCCHHHC--------CCHHHHHHHHHHHHH
Q ss_conf 859995583--------999999999999998
Q gi|254780181|r 143 SIDADITSF--------VPDPVCVFLKNIVIS 166 (182)
Q Consensus 143 ~~g~~i~~l--------VP~~V~~yIk~~~~~ 166 (182)
+.|++++++ ||++|.+||++..+|
T Consensus 163 ~~g~s~~~l~~~~~~~~lP~~V~~YI~~~~LY 194 (196)
T PRK06973 163 RACIARHAQMPDASAEHVPAAVWAYILQHRLY 194 (196)
T ss_pred HCCCCCHHCCCCCHHCCCCHHHHHHHHHCCCC
T ss_conf 85998110277600000869999999986898
No 19
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=99.71 E-value=5.9e-17 Score=121.17 Aligned_cols=151 Identities=23% Similarity=0.228 Sum_probs=94.6
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCC--CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCC
Q ss_conf 9659996589987848999999999974897999645588--87665789899999999976420133554412420333
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNS--VKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISFEG 78 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p--~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~~ 78 (182)
+|+.|+|.|+|+|+|.||+.++++|++..|+|+|+.|+.. +-...++++.+|..|++.+..+..... .........
T Consensus 2 ~~~rgv~~GRFqP~H~GHl~vi~~al~~vdeliI~iGSa~~~~t~~nPfTagER~~mi~~~L~~~~~~~--r~~~~~v~d 79 (172)
T COG1056 2 RMKRGVYFGRFQPLHTGHLYVIKRALSKVDELIIVIGSAQESHTLKNPFTAGERIPMIRDRLREAGLDL--RVYLRPVFD 79 (172)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC--EEEEEECCC
T ss_conf 724789986567964769999999997589799997627645544699975400699999998658774--289996476
Q ss_pred CC-----CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCC-HHHCC
Q ss_conf 33-----2210014970799943765201246779989876479986899706857211326999999985999-55839
Q gi|254780181|r 79 LA-----VNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISIDAD-ITSFV 152 (182)
Q Consensus 79 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g~~-i~~lV 152 (182)
.. ..+.......+.. . ..+..|........ +.+...+ .-....+-|.|.||.++..|++ |..+|
T Consensus 80 ~~~n~i~v~~v~~~~p~~~~-----~---~~~n~~v~~lf~~~-~~~~~~p-~~f~~~e~~~t~ir~~~~~~e~~w~~~~ 149 (172)
T COG1056 80 IEYNDIWVAYVEDLVPPFDV-----V---YTWNPWVARLFHEK-GEKVYYP-PMFPRWEYSGTAIRRKMLGGEDVWEDLV 149 (172)
T ss_pred CCCCHHHHHHHHHCCCCCCC-----C---CCCCHHHHHHHHHC-CCEEECC-CCCCCCCCCCCHHHHHHHCCCCCHHHCC
T ss_conf 20111558888612887553-----6---77877999987661-7606358-8513643356167777636763313336
Q ss_pred CHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254780181|r 153 PDPVCVFLKNI 163 (182)
Q Consensus 153 P~~V~~yIk~~ 163 (182)
|++|.++|+++
T Consensus 150 ~~~v~~~i~eI 160 (172)
T COG1056 150 PTFVAESITEI 160 (172)
T ss_pred CCHHHHHHHHC
T ss_conf 70576777755
No 20
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.67 E-value=2.6e-16 Score=117.36 Aligned_cols=150 Identities=20% Similarity=0.257 Sum_probs=92.2
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCC--CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECC--C-
Q ss_conf 599965899878489999999999748979996455--88876657898999999999764201335544124203--3-
Q gi|254780181|r 3 RKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGC--NSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISF--E- 77 (182)
Q Consensus 3 kigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~--~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~--~- 77 (182)
-.++|.|+|||+|+|||.+++.|++..++|+|+.++ .+...+++++.++|..|++.+.......-.......+. .
T Consensus 6 d~~VfIGRFqPfH~gHl~~i~~AL~~a~~vivliGSa~~~r~~kNPft~~ER~~Mir~~l~~~~~~Rv~~~pv~D~~Ynd 85 (340)
T PRK05379 6 DYLVFIGRFQPFHRGHLAVIREALERAKKVIVLIGSADLARTIKNPFSFEERAQMIEAALDGADLDRVHIRPLRDHLYND 85 (340)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCHHHCCEEEEEECCCCCCCH
T ss_conf 48999971598747899999999973280899982577899898989989999999986694221606998357655687
Q ss_pred CCCCCCCC-------CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHC---CCC
Q ss_conf 33322100-------14970799943765201246779989876479986899706857211326999999985---999
Q gi|254780181|r 78 GLAVNLAK-------DISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISI---DAD 147 (182)
Q Consensus 78 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~---g~~ 147 (182)
..+..... ......-++|-..... .+++ .+.|+.+.+ ....+..||+|.||+..-. ...
T Consensus 86 ~~W~~~Vq~~V~~~~~~~~~i~lvGh~KD~s-------SyYL-~~FP~W~~v---~~~~~~~isAT~iR~~~f~~~~~~~ 154 (340)
T PRK05379 86 QLWLAEVQAAVAEHAGDDASIGLIGHEKDAS-------SYYL-RSFPQWELV---DVDNYEDLSATEIRDAYFAEGGLSM 154 (340)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEECCCCCC-------HHHH-HHCCCCCEE---CCCCCCCCCCCHHHHHHHHCCCCCC
T ss_conf 9999999999998458887078860356752-------6899-748887504---4776588685078999974477420
Q ss_pred HHHCCCHHHHHHHHHH
Q ss_conf 5583999999999999
Q gi|254780181|r 148 ITSFVPDPVCVFLKNI 163 (182)
Q Consensus 148 i~~lVP~~V~~yIk~~ 163 (182)
++..||++|.++++.-
T Consensus 155 ~~~~vp~~v~~~L~~f 170 (340)
T PRK05379 155 LRGAVPAPVYDFLEAF 170 (340)
T ss_pred CCCCCCHHHHHHHHHH
T ss_conf 0023997899999987
No 21
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain.Many ofthese proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=99.66 E-value=2e-16 Score=117.98 Aligned_cols=134 Identities=22% Similarity=0.234 Sum_probs=82.9
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHC-CEEEEECCCCCCCC--CCCCCHHHHHHHHHHHHHHHCCCCCCCC--EEECCCCC
Q ss_conf 9965899878489999999999748-97999645588876--6578989999999997642013355441--24203333
Q gi|254780181|r 5 AVYTGSFDPITNGHMDIIIQALSFV-EDLVIAIGCNSVKT--KGFLSIQERSELIKQSIFHFIPDSSNRV--SVISFEGL 79 (182)
Q Consensus 5 gifgGsFdPiH~GHL~ia~~a~~~~-D~vii~~~~~p~k~--~~~~s~e~r~~m~~~a~~~~~~~~~~~~--~~~~~~~~ 79 (182)
+++||+|||+|.||+.++++|++.+ |++++++..+++++ ....+.++|.+|++.+...+........ ........
T Consensus 1 vi~~G~FDp~H~GH~~li~~a~~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~v~~~~~~~~~~~~~~~~ 80 (141)
T cd02039 1 VLAGGSFDPVHLGHLALIERAKELALDELIVGVFSDPPKKVPKPLFSLEERLEMLEAAGKVDEVVVLEFDRFSWSYTVDF 80 (141)
T ss_pred CEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEHHHCCCCCCHHHH
T ss_conf 98944648767999999999999789961799748984335888899999999999748986698513313377889999
Q ss_pred CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCC--CCCCCCHHHHHHH
Q ss_conf 3221001497079994376520124677998987647998689970685--7211326999999
Q gi|254780181|r 80 AVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKE--SSRYVTSTLIRHL 141 (182)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~--~~~~ISST~IR~~ 141 (182)
............++.|.+....+..|.+... ..+....+.+.+ .+. ....||||.||++
T Consensus 81 ~~~~~~~~~~~~ivvG~D~~~g~~~~~~~~~--~~~~~~~~~~vi-~~~~~~~~~iSSt~IR~~ 141 (141)
T cd02039 81 LKKLLEKLNADVVVVGDDFLFGFDRWGNLRY--EELKSGGEVVVV-PRTGYDGEGISSTRIRER 141 (141)
T ss_pred HHHHHHHCCCCEEEECCCCCCCCCCCCCHHH--HHHHCCCEEEEE-CCCCCCCCEECCCHHHCC
T ss_conf 9999963787449987741458863069899--997769889997-886779967673463079
No 22
>cd02167 NMNAT_NadR The NMNAT domain of NadR protein. The NadR protein (hiNadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=99.56 E-value=4.5e-15 Score=109.95 Aligned_cols=63 Identities=16% Similarity=0.283 Sum_probs=53.7
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCC-CCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 99658998784899999999997489799964558887-6657898999999999764201335
Q gi|254780181|r 5 AVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVK-TKGFLSIQERSELIKQSIFHFIPDS 67 (182)
Q Consensus 5 gifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~k-~~~~~s~e~r~~m~~~a~~~~~~~~ 67 (182)
|+++|+|+|+|.||+.++++|+.++|+|.|+++.+|.. .....+.+.|..+++.+........
T Consensus 1 Glv~GkF~P~H~GH~~lI~~A~~~~d~l~Vvv~~~~~~~~~~~i~~~~R~rWl~~~f~~~~~i~ 64 (157)
T cd02167 1 GLVFGKFAPLHTGHQYLIYTAAAQVDELHVIVSGDPEEDGQIGITLEDRLRWLREAFPDQEQIL 64 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEE
T ss_conf 9552464799737899999999868969999847886555668999999999999779998799
No 23
>cd02171 G3P_Cytidylyltransferase These sequences describe glycerol-3-phosphate cytidylyltransferase, also called CDP-glycerol pyrophosphorylase. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase . Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=99.45 E-value=8.6e-13 Score=96.35 Aligned_cols=124 Identities=16% Similarity=0.264 Sum_probs=80.2
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCC----CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCC
Q ss_conf 659996589987848999999999974897999645588----8766578989999999997642013355441242033
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNS----VKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISFE 77 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p----~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~ 77 (182)
||+++..|+||++|.||+.+.++|.+++|.++++..... .++.+..+.++|.++++....-+ ........
T Consensus 1 mKvv~~~G~FDllH~GHi~~l~~Ak~lgd~LiVgv~sDe~~~~k~~~Pi~~~~eR~~~l~~~k~VD------~Vv~~~~~ 74 (129)
T cd02171 1 MKVVITYGTFDLFHIGHVRLLKRAKALGDKLIVGVSTDEFNAGKGKKAFYPYEQRAEILEAIRYVD------LVIPETNW 74 (129)
T ss_pred CEEEEECCEECCCCHHHHHHHHHHHHHCCEEEEEECCHHHHHHCCCCCCCCHHHHHHHHHCCCCCC------EEEECCCC
T ss_conf 979999266078999999999999984998999953359998569998889999999997499838------89808995
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHC
Q ss_conf 3332210014970799943765201246779989876479986899706857211326999999985
Q gi|254780181|r 78 GLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISI 144 (182)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~ 144 (182)
.............+.+.|.+-...+... ....+ +..+++.+ .+|||.||+++++
T Consensus 75 ~~~~~~i~~~~~D~~v~G~D~~~~~~~~----------~~~~~-v~~~prt~--giSTT~i~~~i~k 128 (129)
T cd02171 75 EQKIEDIKKYNVDIFVMGDDWEGKFDFL----------KEYCE-VVYLPRTE--GISSTELKEMLKK 128 (129)
T ss_pred CCCHHHHHHHCCCEEEECCCCCCCCHHH----------HHCCE-EEEECCCC--CEEHHHHHHHHHH
T ss_conf 2369999964979998787436740567----------70988-99978999--8804999999960
No 24
>PRK08099 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.45 E-value=1.2e-13 Score=101.37 Aligned_cols=155 Identities=20% Similarity=0.213 Sum_probs=91.0
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCC---------CCCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 96599965899878489999999999748979996455888766---------578989999999997642013355441
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTK---------GFLSIQERSELIKQSIFHFIPDSSNRV 71 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~k~~---------~~~s~e~r~~m~~~a~~~~~~~~~~~~ 71 (182)
|+++||..|+|=|.|.||+..+.+|....|++.|+.+..+.... .+.+...|...++.+..+.+.......
T Consensus 63 ~k~iGvifGkF~PlH~GHi~~I~~A~~~~D~L~Vvv~~d~~rd~~l~~~s~m~~~~t~~dR~Rwl~q~f~d~~~I~v~~l 142 (411)
T PRK08099 63 MKKIGVVFGKFYPLHTGHIYLIQRACSQVDELHIIMGYDDTRDRKLFEDSAMSQQPTVQDRLRWLLQTFKYQKNIRIHAF 142 (411)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 20233798764054242899999997317858999940798540003344654456789999999999544767089983
Q ss_pred EEECCCCCCCCCCCCC---CCEEEEEECCCCCCHHHHHHHH-HHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 2420333332210014---9707999437652012467799-89876479986899706857211326999999985999
Q gi|254780181|r 72 SVISFEGLAVNLAKDI---SAQVIVRGLRDMTDFDYEMRMT-SVNRCLCPEIATIALFAKESSRYVTSTLIRHLISIDAD 147 (182)
Q Consensus 72 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g~~ 147 (182)
.....+.....+..+. .....-.+......|..+.+.. ...+.+ +.+...+-+......||||+||+.-. +.
T Consensus 143 ~E~~ip~yp~gW~~W~~~lk~l~~~~~~~~d~vf~~E~~~~~~~~~~~--~~e~~lVD~~R~~~pISaT~IR~nP~--~~ 218 (411)
T PRK08099 143 NEEGMEPYPHGWDVWSNGIKAFMAEKGIQPDLIYTSEEADAPQYEEHL--GIETVLVDPKRTFMNISGTQIRENPF--RY 218 (411)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHCC--CCCEEEECCCCCCCCCCHHHHHHCHH--HH
T ss_conf 567998899866899999999997337898859957854167898605--86138866765416754878863878--88
Q ss_pred HHHCCCHHHHHHH
Q ss_conf 5583999999999
Q gi|254780181|r 148 ITSFVPDPVCVFL 160 (182)
Q Consensus 148 i~~lVP~~V~~yI 160 (182)
|. ++|+.|..+.
T Consensus 219 W~-~Ip~~vR~~F 230 (411)
T PRK08099 219 WE-YIPTEVKPFF 230 (411)
T ss_pred HH-HCCHHHHHHH
T ss_conf 88-6137777754
No 25
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=99.38 E-value=6.3e-12 Score=91.22 Aligned_cols=136 Identities=18% Similarity=0.216 Sum_probs=74.6
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCC----CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECC
Q ss_conf 9659996589987848999999999974897999645588----876657898999999999764201335544124203
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNS----VKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISF 76 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p----~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~ 76 (182)
|||+++ |||||++|.||..+...|.+..|+++|..++.. .|.....|.++|...+...+............. .
T Consensus 4 ~~~v~v-gGtFD~lH~GH~~ll~~a~~~~~~l~vgvtsd~~~~~kk~~~i~p~e~R~~~v~~fl~~~~~~~~~~i~~--i 80 (155)
T PRK00777 4 MMKVVV-GGTFDPLHDGHRKLLRKAFELGKRVLIGLTSDEFAKTYKKHKVRPYEVRLKNLKKFLDSLGAPERYEIMK--I 80 (155)
T ss_pred EEEEEE-ECCCCCCCHHHHHHHHHHHHHCCEEEEEECCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEE--E
T ss_conf 309999-0604767988999999999809989999877999985487767899999999999999709997679999--2
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEE---EEECCCCCCCCCHHHHHHHHH
Q ss_conf 3333221001497079994376520124677998987647998689---970685721132699999998
Q gi|254780181|r 77 EGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATI---ALFAKESSRYVTSTLIRHLIS 143 (182)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i---~l~~~~~~~~ISST~IR~~i~ 143 (182)
....-... ......++................ ...-+.+ .+.+ ++..... .-||||.||+..-
T Consensus 81 ~D~~Gpa~-~~~~daIVVS~ET~~g~~~IN~~R-~e~GL~p-L~I~~V~~v~~~dg-~~iSST~IR~gei 146 (155)
T PRK00777 81 NDPYGPAL-EDDFDAIVVSPETYPVALEINEIR-RERGLRP-LEIVVIDFVMAEDG-RPISSTRIRRGEI 146 (155)
T ss_pred CCCCCCCC-CCCCCEEEECHHHHCCHHHHHHHH-HHCCCCC-EEEEEEEEEECCCC-CEECHHHHHHHCC
T ss_conf 58989867-788878997165620579998999-9889983-48999877888999-8715899862325
No 26
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase; InterPro: IPR006417 The NadR protein of Escherichia coli and closely related bacteria is both enzyme and regulatory protein. The first 60 or so amino acids, N-terminal region is a DNA-binding helix-turn-helix domain (IPR001387 from INTERPRO) responsible for repressing the nadAB genes of NAD de novo biosynthesis. The NadR homologs in Mycobacterium tuberculosis, Haemophilus influenzae, and others appear to lack the repressor domain. NadR has recently been shown to act as an enzyme of the salvage pathway of NAD biosynthesis, nicotinamide-nucleotide adenylyltransferase; members of this family are presumed to share this activity. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this family share that activity. ; GO: 0003677 DNA binding, 0030528 transcription regulator activity, 0006810 transport, 0019363 pyridine nucleotide biosynthetic process, 0045449 regulation of transcription.
Probab=99.38 E-value=3.2e-13 Score=98.88 Aligned_cols=153 Identities=14% Similarity=0.111 Sum_probs=104.4
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCC---------CCCCCCCCHHHHHHHHHHHHHHHCC-CCCCCC
Q ss_conf 659996589987848999999999974897999645588---------8766578989999999997642013-355441
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNS---------VKTKGFLSIQERSELIKQSIFHFIP-DSSNRV 71 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p---------~k~~~~~s~e~r~~m~~~a~~~~~~-~~~~~~ 71 (182)
|+||++.|+|=|+|-||..+++.|.+..|+|.|++|+.. .+.....+.++|+..|+.+.....+ ......
T Consensus 1 k~~G~~fGkF~P~HtGH~~li~~a~s~vDel~ivvg~D~~RD~~lf~D~~a~~~~p~~~R~rwl~e~F~~~~N~i~~~~~ 80 (346)
T TIGR01526 1 KTIGVVFGKFYPLHTGHIYLIYKAASKVDELHIVVGSDDVRDLKLFNDSTAAEGPPVEDRLRWLRELFKYQKNVIKIHNL 80 (346)
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 90457845558985145999999854268148997277233222200022311789889999998616743266886112
Q ss_pred EEECCCCCCCCCCCCCCCEEEEE------ECCCCCCHHHHH-HHHHHHHHH-CCCCCEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 24203333322100149707999------437652012467-799898764-7998689970685721132699999998
Q gi|254780181|r 72 SVISFEGLAVNLAKDISAQVIVR------GLRDMTDFDYEM-RMTSVNRCL-CPEIATIALFAKESSRYVTSTLIRHLIS 143 (182)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~l-~~~~~~i~l~~~~~~~~ISST~IR~~i~ 143 (182)
........-..+..|.....-+. .......|..+. ....+.+.| ..+.+.+..-.+--...||+|.||+-=.
T Consensus 81 ne~~~~~~P~GWd~W~~~l~~l~~~~tle~~~p~~vy~~E~~y~A~~~~~L~aDG~~~~~vd~~Rt~~~vsAT~IR~~P~ 160 (346)
T TIGR01526 81 NENGLPEYPNGWDIWSNSLKELLAEKTLERIEPDLVYVSEPEYAAEYKKVLGADGAEFVLVDPDRTFVSVSATQIRENPF 160 (346)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHCCCCCCEEEEECCCCCEEECCHHHHHCCHH
T ss_conf 88878887776678999998998654410146755772560014047862788863699981897145044205321534
Q ss_pred CCCCHHHCCCHHHH
Q ss_conf 59995583999999
Q gi|254780181|r 144 IDADITSFVPDPVC 157 (182)
Q Consensus 144 ~g~~i~~lVP~~V~ 157 (182)
+-|. ++|..|-
T Consensus 161 --~hW~-hIpr~~r 171 (346)
T TIGR01526 161 --EHWQ-HIPREVR 171 (346)
T ss_pred --HHHH-HCCCEEC
T ss_conf --5130-1472023
No 27
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=99.37 E-value=4.4e-12 Score=92.13 Aligned_cols=132 Identities=17% Similarity=0.192 Sum_probs=75.9
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCC----CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCC
Q ss_conf 9996589987848999999999974897999645588----876657898999999999764201335544124203333
Q gi|254780181|r 4 KAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNS----VKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISFEGL 79 (182)
Q Consensus 4 igifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p----~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~~~ 79 (182)
|++.||||||+|.||..+.+.|.+..|+|.|..++.. .|.....+.+.|...+...+... ............
T Consensus 2 itvVGGTFD~lH~GHkaLL~~Af~~g~~V~IGLTSDe~A~k~k~~~v~pfe~R~~~L~~~l~~~----~~~yeI~~L~D~ 77 (328)
T PRK01170 2 ITVVGGTFSKLHKGHKALLRTAISTGNELVIGLTSDEYVKKNKVYPAIPYEKRYRELYNYMSKY----TNKFRIRPIDDR 77 (328)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCEEEEEECCHHHHHHCCCCCCCCHHHHHHHHHHHHHHC----CCCEEEEEECCC
T ss_conf 1167326775165899999999960896899967789997569886799899999999999846----881699991589
Q ss_pred CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC-CCEE-EEECCCCCCCCCHHHHHHH
Q ss_conf 322100149707999437652012467799898764799-8689-9706857211326999999
Q gi|254780181|r 80 AVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPE-IATI-ALFAKESSRYVTSTLIRHL 141 (182)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~i-~l~~~~~~~~ISST~IR~~ 141 (182)
.-..........++................ ..+-+.|- +..+ +...+- -..||||-||+-
T Consensus 78 yGpA~~e~d~DaIVVSpET~~~a~kINeiR-~e~GL~PLeIIvVp~VlAeD-G~pISSTRIr~G 139 (328)
T PRK01170 78 NGNAPYENDYERIVVSPETYLRSLKINEIR-IENGLPPLKIIRVPYVLAED-LFPISSTRIING 139 (328)
T ss_pred CCCCCCCCCCCEEEECHHHHHHHHHHHHHH-HHCCCCCEEEEEEEEEECCC-CCCCCHHHEECC
T ss_conf 889886788888998772767799999999-97799980799975588478-971114422257
No 28
>cd02172 RfaE_N RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=99.27 E-value=5.6e-11 Score=85.55 Aligned_cols=134 Identities=14% Similarity=0.097 Sum_probs=79.8
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCC----CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCC
Q ss_conf 6599965899878489999999999748979996455888----766578989999999997642013355441242033
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSV----KTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISFE 77 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~----k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~ 77 (182)
+||++-.|+||++|.||+.+.++|.+++|.++|...+... |..+..+.++|.++++....-+.-. .. ..
T Consensus 4 kkiv~~~G~FDl~H~GHi~~l~~Ak~~gd~LiVgv~sD~~i~k~k~~Pi~~~~eR~~il~sl~~VD~Vi------i~-~~ 76 (143)
T cd02172 4 KKVVLTHGCFDLLHAGHVRHLLAARSLGDILVVGLTSDRSVLKGPGRPIFPEDLRAEVLAALECVDYVV------LF-DE 76 (143)
T ss_pred CEEEEECCEECCCCHHHHHHHHHHHHCCCEEEEEEECCHHHHCCCCCCEECHHHHHHHHHCCCCCCEEE------EC-CC
T ss_conf 989999273377899999999999974998999996898896689987445999999984537666899------78-99
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCC
Q ss_conf 33322100149707999437652012467799898764799868997068572113269999999859
Q gi|254780181|r 78 GLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISID 145 (182)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g 145 (182)
...........+.+.+.|.+-................-....+.+++. ..+ .+|||.|.+++.+.
T Consensus 77 ~~~~~~i~~~kpdi~v~G~Dy~~~~~~~~~~~e~~~~~~~gg~v~~~~-~~~--~~SST~ii~ri~~~ 141 (143)
T cd02172 77 PTAEELIDALQPDIYVKGGDYANGENTGEILAEAEAVEAYGGKIVFTP-GEI--VFSSSGLINRILDE 141 (143)
T ss_pred CCHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCEEEEEC-CCC--CEEHHHHHHHHHHH
T ss_conf 997899987198699989864488987651358999998098999919-998--77779999999986
No 29
>KOG3199 consensus
Probab=99.22 E-value=1.1e-10 Score=83.83 Aligned_cols=160 Identities=15% Similarity=0.135 Sum_probs=83.4
Q ss_pred ECCCCCCCCHHHHHHHHHHHHHC----C-EE---EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEE----
Q ss_conf 65899878489999999999748----9-79---996455888766578989999999997642013355441242----
Q gi|254780181|r 7 YTGSFDPITNGHMDIIIQALSFV----E-DL---VIAIGCNSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVI---- 74 (182)
Q Consensus 7 fgGsFdPiH~GHL~ia~~a~~~~----D-~v---ii~~~~~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~---- 74 (182)
=-||||||+++||-+.+-|...+ . +| ++-|-+...|++...+.-.|..|+++|.. .....-.+-+..
T Consensus 13 A~gSFNpiT~~HLrmfElAkd~l~~t~~~~Vv~GimSPV~DaYkKKgLipa~hrv~~~ElAt~-~Skwl~vD~weslQ~~ 91 (234)
T KOG3199 13 ACGSFNPITNLHLRMFELAKDYLNETGRYRVVKGIMSPVGDAYKKKGLIPAYHRVRMVELATE-TSKWLMVDGWESLQKE 91 (234)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHCCCCCHHHHHHHHHHHHHC-CCCCEECCHHHHCCHH
T ss_conf 852668524789999999999970468759986676453034330565235667777776542-5550650316551488
Q ss_pred ------------------CCCCCCCCCCCCCCCEEEEEECCCCCCHHHHH---HHHHHHH--------------------
Q ss_conf ------------------03333322100149707999437652012467---7998987--------------------
Q gi|254780181|r 75 ------------------SFEGLAVNLAKDISAQVIVRGLRDMTDFDYEM---RMTSVNR-------------------- 113 (182)
Q Consensus 75 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------------------- 113 (182)
................-++-|.+-...|..+. ....+..
T Consensus 92 wt~T~~vlrHhqe~~~~kr~~~~~~~~~k~~~kVmLlcG~Dliesf~~p~~~w~~~dl~~i~~~yGl~cv~r~gsD~~~~ 171 (234)
T KOG3199 92 WTRTVKVLRHHQEELNRKRGGTELSPGTKSDVKVMLLCGGDLIESFGEPNLVWKDEDLRTILGEYGLVCVTREGSDVENF 171 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCHHHHHCCCCCCCCCHHHHHHHHHHCCEEEEECCCCCHHHH
T ss_conf 76566888888999988744330265556772189985714888605888775633477778648189996477798999
Q ss_pred ------HHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHH
Q ss_conf ------647998689970685721132699999998599955839999999999999986
Q gi|254780181|r 114 ------CLCPEIATIALFAKESSRYVTSTLIRHLISIDADITSFVPDPVCVFLKNIVISL 167 (182)
Q Consensus 114 ------~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g~~i~~lVP~~V~~yIk~~~~~~ 167 (182)
.+...-..+.+....-.-.||||.||+.+++|++|++++|+.|.+||++--+|.
T Consensus 172 i~~~d~i~~~~~~~l~ikn~~~~N~ISStklr~ai~r~~SVkYl~PD~Vi~yI~~h~LY~ 231 (234)
T KOG3199 172 LSSHDIILEKRRNILHIKNEIVPNDISSTKLRQAIRRGQSVKYLTPDSVIEYIREHNLYS 231 (234)
T ss_pred HHHHHHHHHHHCCEEEEEEEEECCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCC
T ss_conf 860388887306637876533037753699999997288057648488999999731100
No 30
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=99.15 E-value=7.7e-10 Score=78.78 Aligned_cols=145 Identities=16% Similarity=0.243 Sum_probs=82.2
Q ss_pred CCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEE-----CCCCCCCCCC-
Q ss_conf 9878489999999999748979996455888766578989999999997642013355441242-----0333332210-
Q gi|254780181|r 11 FDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVI-----SFEGLAVNLA- 84 (182)
Q Consensus 11 FdPiH~GHL~ia~~a~~~~D~vii~~~~~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~-----~~~~~~~~~~- 84 (182)
-||+++||+.++++|.+.+|.|++.+.. .+...++.++|.+|++.......+...-....+ +++..+....
T Consensus 8 aNPFT~GH~yLie~Aa~~~D~l~vFvv~---ed~S~F~~~~R~~LV~~g~~~l~Nv~v~~g~~YiIS~aTFP~YFlK~~~ 84 (182)
T smart00764 8 ANPFTLGHRYLVEQAAAECDWVHLFVVS---EDASLFSFDERFALVKKGTKDLDNVTVHSGSDYIISRATFPSYFLKEQD 84 (182)
T ss_pred CCCCCCHHHHHHHHHHHHCCEEEEEEEC---CCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCEEEECCCCCHHHCCCHH
T ss_conf 8987534899999999649989999973---6667388999999999975779987997799989863667133316732
Q ss_pred -------------------CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC-CCCCEEEEECCCC--CCCCCHHHHHHHH
Q ss_conf -------------------01497079994376520124677998987647-9986899706857--2113269999999
Q gi|254780181|r 85 -------------------KDISAQVIVRGLRDMTDFDYEMRMTSVNRCLC-PEIATIALFAKES--SRYVTSTLIRHLI 142 (182)
Q Consensus 85 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~i~l~~~~~--~~~ISST~IR~~i 142 (182)
...+.-.-++|.......... .+..+.+.+. +..+.+.+ .+.. -..||+|.+|+++
T Consensus 85 ~v~~~~~~lD~~iF~~~IApaL~It~RfVG~EP~~~vT~~-YN~~M~~~l~~~~Iev~~i-~R~~~~g~~ISAS~VR~~l 162 (182)
T smart00764 85 VVIKSQTTLDLRIFRKYIAPALGITHRYVGEEPFSPVTAI-YNQTMKQTLLSPAIEVVEI-ERKKANGQPISASTVRKLL 162 (182)
T ss_pred HHHHHHHHHHHHHHHHHCHHHHCCCCCEECCCCCCHHHHH-HHHHHHHHCCCCCCEEEEE-ECCCCCCCEEEHHHHHHHH
T ss_conf 6989998987999998543551876324178989876999-9999997467899789996-1422599487099999999
Q ss_pred HCCC--CHHHCCCHHHHHHH
Q ss_conf 8599--95583999999999
Q gi|254780181|r 143 SIDA--DITSFVPDPVCVFL 160 (182)
Q Consensus 143 ~~g~--~i~~lVP~~V~~yI 160 (182)
+.|. .++.|||++.++||
T Consensus 163 ~~~~~~~i~~lVP~tT~~~L 182 (182)
T smart00764 163 KEGNLEELAKLVPETTLNFL 182 (182)
T ss_pred HCCCHHHHHHHCCHHHHHHC
T ss_conf 85999999873888658449
No 31
>pfam08218 Citrate_ly_lig Citrate lyase ligase C-terminal domain. This family is composed of the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=99.12 E-value=1.2e-09 Score=77.53 Aligned_cols=144 Identities=15% Similarity=0.208 Sum_probs=83.2
Q ss_pred CCCCCHHHHHHHHHHHHHCCEEE-EECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEE-----ECCCCCCCCCC
Q ss_conf 98784899999999997489799-9645588876657898999999999764201335544124-----20333332210
Q gi|254780181|r 11 FDPITNGHMDIIIQALSFVEDLV-IAIGCNSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSV-----ISFEGLAVNLA 84 (182)
Q Consensus 11 FdPiH~GHL~ia~~a~~~~D~vi-i~~~~~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~ 84 (182)
-||+++||..++++|++.+|.|. |+... ....++.++|.+|++.-.....+...-.... .+++.......
T Consensus 8 aNPFT~GH~yLvE~Aa~~~d~l~vFVV~e----D~S~F~~~~R~~LV~~G~~~l~NV~v~~g~~YiIS~aTFP~YFlKd~ 83 (182)
T pfam08218 8 ANPFTLGHRYLVEQAAAENDWVHLFVVSE----DASLFSYEERFALVKQGTKDLDNVTVHSGGDYIISRATFPSYFIKEQ 83 (182)
T ss_pred CCCCCCHHHHHHHHHHHHCCEEEEEEEEC----CCCCCCHHHHHHHHHHHHCCCCCEEEECCCCEEEEEECCCHHHHCCH
T ss_conf 79885368999999997499899999835----56738899999999997555888699559987897104715553556
Q ss_pred --------------------CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC-CCEEEEECCCC--CCCCCHHHHHHH
Q ss_conf --------------------0149707999437652012467799898764799-86899706857--211326999999
Q gi|254780181|r 85 --------------------KDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPE-IATIALFAKES--SRYVTSTLIRHL 141 (182)
Q Consensus 85 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~i~l~~~~~--~~~ISST~IR~~ 141 (182)
...+.-.-++|......... ..+..+.+.|.+. .+.+.+ .+.. -..||+|.+|++
T Consensus 84 ~~v~~~~~~lD~~iF~~~IApaL~It~RfVG~EP~~~vT~-~YN~~m~~~Lp~~~I~v~~i-~R~~~~~~~ISAS~VR~~ 161 (182)
T pfam08218 84 DVVIKSQTTIDLRIFREYIAPALGITHRYVGEEPFSRVTA-IYNQAMQSELPPAGIEVVEI-PRKEYDGGPISASTVRQA 161 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHH-HHHHHHHHHCCCCCCEEEEE-CCCCCCCCEECHHHHHHH
T ss_conf 8999999999899999962265287633405898987799-99999998668469479995-254569968709999999
Q ss_pred HHCCC--CHHHCCCHHHHHHH
Q ss_conf 98599--95583999999999
Q gi|254780181|r 142 ISIDA--DITSFVPDPVCVFL 160 (182)
Q Consensus 142 i~~g~--~i~~lVP~~V~~yI 160 (182)
+++|. .++.|||++..+||
T Consensus 162 l~~~~~~~i~~lVP~tT~~~L 182 (182)
T pfam08218 162 IKEGNLEALAKLVPATTLQYL 182 (182)
T ss_pred HHCCCHHHHHHHCCHHHHHHC
T ss_conf 985999999873887557439
No 32
>cd02170 cytidylyltransferase The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=99.10 E-value=2.2e-09 Score=76.06 Aligned_cols=131 Identities=16% Similarity=0.148 Sum_probs=79.4
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCC----CCCC-CCCHHHHHHHHHHHHHHHCCCCCCCCEEECC
Q ss_conf 6599965899878489999999999748979996455888----7665-7898999999999764201335544124203
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSV----KTKG-FLSIQERSELIKQSIFHFIPDSSNRVSVISF 76 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~----k~~~-~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~ 76 (182)
+|...-.|+||.+|.||+.+.++|.+++|+++++...... |... ..+.++|.++++....-+ .......
T Consensus 1 ~k~V~~~G~FDl~H~GHi~~l~~Ak~~gd~LiVgv~sD~~v~~~Kg~~pi~~~~eR~~~l~~l~~VD------~Vi~~~~ 74 (136)
T cd02170 1 PKRVYVDGTFDLFHPGHIRALRQAKKLGDYLIVGVHSDETINKHKGPPPIMNEEERAEVVLACKYVD------EVVLGAP 74 (136)
T ss_pred CEEEEEEEEECCCCHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCCCCCCHHHHHHHHHHCCCCC------EEEECCC
T ss_conf 9499992268868888999999999809989999947766663369988779999999998588987------7997899
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCC
Q ss_conf 333322100149707999437652012467799898764799868997068572113269999999859
Q gi|254780181|r 77 EGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISID 145 (182)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g 145 (182)
..............+.+.|.+....-.. ....... ......+ .++.. ..+|||.|++++.++
T Consensus 75 ~~~~~~~~~~~~~di~v~G~D~~~~~~~-~~~~~~~---k~~G~~~-~~~~~--~~~STT~Ii~rI~~~ 136 (136)
T cd02170 75 YVVTPEFLEKLPIDIVVHGDDIKLDADG-EDVYEEL---KEAGGFK-EVKRT--EGVSTTDIINRILKN 136 (136)
T ss_pred CCHHHHHHHHCCCCEEEECCCCCCCCCC-HHHHHHH---HHCCEEE-EECCC--CCCCHHHHHHHHHCC
T ss_conf 9657999988599799978866777532-0099999---9699699-96489--994689999999539
No 33
>cd02164 PPAT_CoAS The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalysed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present , and this was subsequently confirmed on identification of the bacterial PPAT/coaD.
Probab=99.03 E-value=1.9e-09 Score=76.40 Aligned_cols=131 Identities=20% Similarity=0.255 Sum_probs=71.7
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHC-CEEEEECCCCCC---CC--CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCC
Q ss_conf 965899878489999999999748-979996455888---76--657898999999999764201335544124203333
Q gi|254780181|r 6 VYTGSFDPITNGHMDIIIQALSFV-EDLVIAIGCNSV---KT--KGFLSIQERSELIKQSIFHFIPDSSNRVSVISFEGL 79 (182)
Q Consensus 6 ifgGsFdPiH~GHL~ia~~a~~~~-D~vii~~~~~p~---k~--~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~~~ 79 (182)
++|||||++|.||..+...|.... ++|.|..++... |. ....|.+.|...+...+........... ......
T Consensus 2 ~vGGTFD~lH~GHk~LL~~A~~~~~~~l~IGvTsd~ll~~K~~~~~i~~~~~R~~~v~~fl~~~~~~~~~~i--~~l~D~ 79 (142)
T cd02164 2 VLGGTFDRLHDGHKILLSVAFLLAGEKLVIGVTDDELLKNKSYKELIEPYEERIRDLHEFLKDLKPTLKYEI--VPIDDP 79 (142)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHCCCCEEEE--EEECCC
T ss_conf 550557742779999999999837998999988778875157740058999999999999997199963899--991589
Q ss_pred CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEE--EECC-CCCCCCCHHHHHH
Q ss_conf 32210014970799943765201246779989876479986899--7068-5721132699999
Q gi|254780181|r 80 AVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIA--LFAK-ESSRYVTSTLIRH 140 (182)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~--l~~~-~~~~~ISST~IR~ 140 (182)
.-......+...++.........+....... ..-+.| .+.+. +... ..-.-||||.||+
T Consensus 80 ~Gpa~~~~d~daiVVS~ET~~g~~~IN~~R~-e~GL~p-L~I~~v~~v~~~~dg~kISST~IR~ 141 (142)
T cd02164 80 YGPTITDPDLEAIVVSPETYKGGLKINRRRA-ENGLAP-LEIVVIPLVSAEGDETKISSTRIRR 141 (142)
T ss_pred CCCCCCCCCCCEEEECHHHHHHHHHHHHHHH-HCCCCC-EEEEEEEEEECCCCCCEECHHHHCC
T ss_conf 8988777887789986889767899999999-879984-5999997586278997465234207
No 34
>cd02169 Citrate_lyase_ligase Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.97 E-value=1.1e-08 Score=71.88 Aligned_cols=145 Identities=14% Similarity=0.238 Sum_probs=83.7
Q ss_pred CCCCCCHHHHHHHHHHHHHCCEEE-EECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEE---E--CCCCCCCCC
Q ss_conf 998784899999999997489799-9645588876657898999999999764201335544124---2--033333221
Q gi|254780181|r 10 SFDPITNGHMDIIIQALSFVEDLV-IAIGCNSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSV---I--SFEGLAVNL 83 (182)
Q Consensus 10 sFdPiH~GHL~ia~~a~~~~D~vi-i~~~~~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~---~--~~~~~~~~~ 83 (182)
--||+++||..++++|++.+|.|. |+... ....+|++.|.+|++.-.....+...-.-.. . +++..+...
T Consensus 121 NaNPFTlGHrYLvE~Aa~~~D~l~vFVV~E----D~S~F~f~~R~~LVk~G~~~L~NV~v~~g~~YiIS~aTFPsYFlK~ 196 (296)
T cd02169 121 NANPFTLGHRYLVEKAASENDWVYVFVVSE----DSSLFPFEDRLKLVKKGTAHLKNVTVHPGGDYIISSATFPSYFLKE 196 (296)
T ss_pred ECCCCCCHHHHHHHHHHHHCCEEEEEEEEC----CCCCCCHHHHHHHHHHHHCCCCCEEEECCCCEEEECCCCCHHHCCC
T ss_conf 379875147999999996499899999945----4564878999999999747588869977999798646671444077
Q ss_pred C--------------------CCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCCEEEEECCCC--CCCCCHHHHHH
Q ss_conf 0--------------------0149707999437652012467799898764-79986899706857--21132699999
Q gi|254780181|r 84 A--------------------KDISAQVIVRGLRDMTDFDYEMRMTSVNRCL-CPEIATIALFAKES--SRYVTSTLIRH 140 (182)
Q Consensus 84 ~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~i~l~~~~~--~~~ISST~IR~ 140 (182)
. .....-.-++|......... ..+..+.+.| .+.++.+.+ ++.. -..||+|.+|+
T Consensus 197 ~~~v~~~qa~lD~~iF~~~IApaL~It~RfVG~EP~~~vT~-~YN~~M~~~Lp~~~Iev~~i-~R~~~~g~~ISAS~VR~ 274 (296)
T cd02169 197 DDVVIKSQAALDARIFRKYIAPALGITRRYVGEEPFSPVTA-IYNQAMKSELPPPGIEVIEI-ERKTTDGQPISASTVRQ 274 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHCHHHHCCCCCEECCCCCCHHHH-HHHHHHHHHCCCCCCEEEEE-CCCCCCCCEEEHHHHHH
T ss_conf 43788999888699999844365087521517898987699-99999998557699679996-04115993870999999
Q ss_pred HHHCCC--CHHHCCCHHHHHHH
Q ss_conf 998599--95583999999999
Q gi|254780181|r 141 LISIDA--DITSFVPDPVCVFL 160 (182)
Q Consensus 141 ~i~~g~--~i~~lVP~~V~~yI 160 (182)
++++|. .|+.|||++..+||
T Consensus 275 ~l~~~~~~~i~~lVP~tT~~fL 296 (296)
T cd02169 275 ALKNGDLETLAKLVPETTLEFL 296 (296)
T ss_pred HHHCCCHHHHHHHCCHHHHHHC
T ss_conf 9985999999763886437439
No 35
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain; InterPro: IPR004821 Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.; GO: 0003824 catalytic activity, 0009058 biosynthetic process.
Probab=98.97 E-value=1.4e-09 Score=77.24 Aligned_cols=57 Identities=32% Similarity=0.639 Sum_probs=48.6
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECC----CCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9996589987848999999999974897999645----58887665789899999999976420
Q gi|254780181|r 4 KAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIG----CNSVKTKGFLSIQERSELIKQSIFHF 63 (182)
Q Consensus 4 igifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~----~~p~k~~~~~s~e~r~~m~~~a~~~~ 63 (182)
+|+++|+|||+|.||+.+++++++++| +++..+ .++.| ...+.++|.++++......
T Consensus 1 ~~~~~G~fdp~h~GH~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~ 61 (63)
T TIGR00125 1 IVIFGGTFDPLHLGHLDLLERAKELGD-LIVGVGSDEFVNPLK--PVFSLEERLELLKALKYVD 61 (63)
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHCC-EEEEECCCCCCCCCC--CCCCHHHHHHHHHHHHHCC
T ss_conf 834067755555547999999997589-367533620112457--7679889999998764204
No 36
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=98.85 E-value=3.3e-07 Score=63.08 Aligned_cols=168 Identities=13% Similarity=0.156 Sum_probs=94.1
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEE-EECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEE-----C
Q ss_conf 65999658998784899999999997489799-96455888766578989999999997642013355441242-----0
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLV-IAIGCNSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVI-----S 75 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~~D~vi-i~~~~~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~-----~ 75 (182)
+|||=.-=--||+++||-.++++|+.++|.|- |++.. +...+|.++|..|++.-.....+...-+...+ +
T Consensus 145 kkIgaIVMNANPFTLGH~YLVEqAaaqcDwlHLFvV~e----D~S~f~y~~R~~Lv~~G~~~l~Nvt~HsgsdYiISrAT 220 (352)
T COG3053 145 KKIGAIVMNANPFTLGHRYLVEQAAAQCDWLHLFVVKE----DSSLFPYEDRLDLVKKGTADLPNVTVHSGSDYIISRAT 220 (352)
T ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHHCCEEEEEEEEC----CCCCCCHHHHHHHHHHHHCCCCCEEEECCCCEEEEECC
T ss_conf 70689997079865215999999996589899999824----54548878999999976513774689628876887224
Q ss_pred CCCCCCCCC--------------------CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC------CCCEEEEECCCC
Q ss_conf 333332210--------------------014970799943765201246779989876479------986899706857
Q gi|254780181|r 76 FEGLAVNLA--------------------KDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCP------EIATIALFAKES 129 (182)
Q Consensus 76 ~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~i~l~~~~~ 129 (182)
++..+.... .....-.-++|.......... .+..+.+.|.. .++.+. ..+..
T Consensus 221 FP~YFiKeq~vv~~s~t~iDl~iFr~~iA~aLgIThRfVG~EP~c~vT~~-YNq~M~~~L~~~~~~~p~I~vve-i~Rk~ 298 (352)
T COG3053 221 FPAYFIKEQSVVNDSQTEIDLKIFRKYIAPALGITHRFVGTEPFCRVTAI-YNQQMRYWLEDPTISAPPIEVVE-IERKK 298 (352)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHH-HHHHHHHHHHCCCCCCCCEEEEE-EEHHH
T ss_conf 60555301777877888877999999878873861023257888677899-99999998725677899628999-40123
Q ss_pred C--CCCCHHHHHHHHHCCC--CHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2--1132699999998599--95583999999999999998654577651
Q gi|254780181|r 130 S--RYVTSTLIRHLISIDA--DITSFVPDPVCVFLKNIVISLVKYDSIKL 175 (182)
Q Consensus 130 ~--~~ISST~IR~~i~~g~--~i~~lVP~~V~~yIk~~~~~~~k~~~~~~ 175 (182)
+ ..||+|-+|+.++++. .|+.|||+...+|+.+-++...-.-.-++
T Consensus 299 ~~~~~ISAS~VR~~l~~~~~~~ia~lVP~tTl~Yl~~~~a~~~~~~~~~q 348 (352)
T COG3053 299 YQEMPISASRVRQLLAKNDLEAIANLVPATTLNYLQQHLAEHIIDIAARQ 348 (352)
T ss_pred HCCCCCCHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 14786348999999870899999743737799999988877577776420
No 37
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=98.80 E-value=4.2e-08 Score=68.42 Aligned_cols=134 Identities=18% Similarity=0.240 Sum_probs=77.3
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCC----CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECC
Q ss_conf 96599965899878489999999999748979996455888----76657898999999999764201335544124203
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSV----KTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISF 76 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~----k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~ 76 (182)
|| ....|||||++|.||-.+...|...-++|.++..+... |.....+.+.|++-+..-.......... ....
T Consensus 5 fm-~vavGGTFd~LH~GHk~LL~~A~~~G~~v~IGlTsDe~~k~~k~~~i~p~~~R~~~l~~fl~~~~~~~~~---iv~i 80 (158)
T COG1019 5 FM-KVAVGGTFDRLHDGHKKLLEVAFEIGDRVTIGLTSDELAKKKKKEKIEPYEVRLRNLRNFLESIKADYEE---IVPI 80 (158)
T ss_pred CE-EEEECCCCHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCE---EEEE
T ss_conf 13-8884133505542499999999985791799976489998722256774899999999999984688654---9982
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEE---ECCCCCCCCCHHHHHHH
Q ss_conf 333322100149707999437652012467799898764799868997---06857211326999999
Q gi|254780181|r 77 EGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIAL---FAKESSRYVTSTLIRHL 141 (182)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l---~~~~~~~~ISST~IR~~ 141 (182)
....-..........+++............ .....+-+.| .+.+.+ ...-.. .||||.||.-
T Consensus 81 ~Dp~G~t~~~~~~e~iVVS~ET~~~Al~IN-~~R~~~Gl~p-L~I~~i~~v~aedg~-~iSSTrIrrg 145 (158)
T COG1019 81 DDPYGPTVEDPDFEAIVVSPETYPGALKIN-EIREKRGLPP-LEIIVIDYVLAEDGK-PISSTRIRRG 145 (158)
T ss_pred CCCCCCCCCCCCEEEEEECCCCCHHHHHHH-HHHHHCCCCC-EEEEEEEHHHHHCCC-CCCHHHHECC
T ss_conf 589999887675568997633215688988-9999779997-189996521241199-5414431000
No 38
>cd02156 nt_trans nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=98.79 E-value=1.6e-08 Score=70.87 Aligned_cols=130 Identities=18% Similarity=0.196 Sum_probs=74.3
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHH----CCEEEEECCCCCCCCC----CCCCHHHHHHHHHHHHHHHCCCCCC----CCE
Q ss_conf 996589987848999999999974----8979996455888766----5789899999999976420133554----412
Q gi|254780181|r 5 AVYTGSFDPITNGHMDIIIQALSF----VEDLVIAIGCNSVKTK----GFLSIQERSELIKQSIFHFIPDSSN----RVS 72 (182)
Q Consensus 5 gifgGsFdPiH~GHL~ia~~a~~~----~D~vii~~~~~p~k~~----~~~s~e~r~~m~~~a~~~~~~~~~~----~~~ 72 (182)
++++|+|||+|.||+.++..+... .+.+++++..+++... ...+.++|.+|++.+.......... ...
T Consensus 1 ~~~~g~fd~~H~GH~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 80 (147)
T cd02156 1 VLAPGPFDPLHLGHLRLIERADELARYGGDELIVIDDTDPPIKKLKGKPLESLEERLEMLREALKDLGVVLDFDLEREDG 80 (147)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCCCCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHC
T ss_conf 98986048767899999999999999769928999789991453378767689999999998288814998577888633
Q ss_pred EECCCCCCCCCCCC--CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCC--CCCCCCHH
Q ss_conf 42033333221001--497079994376520124677998987647998689970685--72113269
Q gi|254780181|r 73 VISFEGLAVNLAKD--ISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKE--SSRYVTST 136 (182)
Q Consensus 73 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~--~~~~ISST 136 (182)
.............. ......+.|.+....+..+... ...........+.+.... ....+|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~G~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~sSt 146 (147)
T cd02156 81 VPDYTFDFVKDLLALLLPVDVVVVGKDQLFGFEREGAL--LLLELLKGPEVVVVPRGLLDEGGGKSST 146 (147)
T ss_pred CCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCH--HHHHHHCCCCEEEECCHHCCCCCEECCC
T ss_conf 76667999999998446998899886987899998699--9999735998899571102678776178
No 39
>cd02174 CCT CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures . A current model posits that bilayer curvature elastic stress is sensed by CCT and governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=98.71 E-value=1.8e-07 Score=64.62 Aligned_cols=128 Identities=16% Similarity=0.085 Sum_probs=75.0
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHC--CEEEEECCCCC----CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCC
Q ss_conf 9965899878489999999999748--97999645588----87665789899999999976420133554412420333
Q gi|254780181|r 5 AVYTGSFDPITNGHMDIIIQALSFV--EDLVIAIGCNS----VKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISFEG 78 (182)
Q Consensus 5 gifgGsFdPiH~GHL~ia~~a~~~~--D~vii~~~~~p----~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~~ 78 (182)
..-.|+||-+|.||+.+.++|.++. |.++|+..+.. .|..+..+.++|.++++....-+.-. ......
T Consensus 5 Vy~~G~FDLlH~GHi~~L~~Ak~lG~~d~LIVGv~sD~~v~~~Kg~PI~~~~eR~~~v~~lk~VD~Vi------~~~p~~ 78 (150)
T cd02174 5 VYVDGCFDLFHYGHANALRQAKALGPNDYLIVGVHSDEEIHKHKGPPVMTEEERYEAVRACKWVDEVV------EGAPYV 78 (150)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHCCCCCCCCHHHHHHHHHCCCCCCEEE------CCCCCC
T ss_conf 99833686689889999999997199988999985786787459998688999999997088878996------899864
Q ss_pred CCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCC
Q ss_conf 3322100149707999437652012467799898764799868997068572113269999999859
Q gi|254780181|r 79 LAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISID 145 (182)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g 145 (182)
............+.+.|.+........ ............+ ..+.. ..||||.|.++|..+
T Consensus 79 ~~~~~i~k~~~D~vv~G~d~~~~~~~~----~~~~~~k~~G~~~-~~~~t--~giSTT~iI~rIl~~ 138 (150)
T cd02174 79 TTPEFLDKYKCDYVAHGDDIYLDADGE----DCYAEVKDAGRFK-EVKRT--EGVSTTDLIGRILLD 138 (150)
T ss_pred CCHHHHHHHCCCEEEECCCCCCCCCCC----CHHHHHHHCCEEE-EECCC--CCCCHHHHHHHHHHH
T ss_conf 698999761899999899253588733----3889998499999-92898--990789999999998
No 40
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP#ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECT's, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=98.71 E-value=1.4e-07 Score=65.26 Aligned_cols=134 Identities=16% Similarity=0.165 Sum_probs=82.6
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCC----CCC--CCCCHHHHHHHHHHHHHHHCCCCCCCCEEEC
Q ss_conf 6599965899878489999999999748979996455888----766--5789899999999976420133554412420
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSV----KTK--GFLSIQERSELIKQSIFHFIPDSSNRVSVIS 75 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~----k~~--~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~ 75 (182)
+||....|+||-+|.||+.+.++|.++.|.++|+..+... |.. +..+.++|.+++.....-+ ......
T Consensus 2 kkiV~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgv~sD~~v~~~Kg~~rPi~~~~eR~~~l~a~~~VD------~Vi~~~ 75 (152)
T cd02173 2 DKVVYVDGAFDLFHIGHIEFLEKARELGDYLIVGVHDDQTVNKYKGKNYPIMNLHERVLSVLACRYVD------EVVIGA 75 (152)
T ss_pred CEEEEECCEECCCCHHHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCCCCCCCHHHHHHHHHCCCCCC------EEEECC
T ss_conf 98999833778699889999999998699799998474778975589998878999999997498745------899499
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCHHHHH-HHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 3333322100149707999437652012467-79989876479986899706857211326999999985999
Q gi|254780181|r 76 FEGLAVNLAKDISAQVIVRGLRDMTDFDYEM-RMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISIDAD 147 (182)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g~~ 147 (182)
...............+.+.|.+......... ......+.. ..+..... ...+|.|.|-++|.++.+
T Consensus 76 p~~~~~~~i~~~~pd~~v~G~d~~~~~~~~~~~~y~~~k~~----G~~~~~~~--~~giSTt~II~RIl~~r~ 142 (152)
T cd02173 76 PYVITKELIEKFKIDVVVHGKTEETPDSLDGEDPYAVPKEM----GIFKEIDS--GSDLTTRDIVQRIIKNRL 142 (152)
T ss_pred CCCCCHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHC----CEEEEECC--CCCCCHHHHHHHHHHHHH
T ss_conf 97570999998499999987988765456706789999839----88999589--999679999999998299
No 41
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=98.63 E-value=4.2e-07 Score=62.43 Aligned_cols=134 Identities=16% Similarity=0.175 Sum_probs=82.9
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCC-----CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEC
Q ss_conf 9659996589987848999999999974897999645588-----87665789899999999976420133554412420
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNS-----VKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVIS 75 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p-----~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~ 75 (182)
|.| .+-+|+||=+|.||+...++|.+++|+++|+.+... .|.++..+.++|+++++...--+ ......
T Consensus 1 ~~r-V~~~GtFDilH~GHi~~L~~Ak~lGd~liVv~a~de~~~~~~k~~pi~~~~qR~evl~s~ryVD------~vi~~~ 73 (140)
T COG0615 1 MKR-VWADGTFDILHPGHIEFLRQAKKLGDELIVVVARDETVIKRKKRKPIMPEEQRAEVLESLRYVD------EVILGA 73 (140)
T ss_pred CCE-EEEEEEEEEECHHHHHHHHHHHHHCCEEEEEEECCHHHHHHCCCCCCCCHHHHHHHHHCCCCHH------EEEECC
T ss_conf 937-9980389985665999999999858969999964578888508999888899999997276254------042089
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHC
Q ss_conf 333332210014970799943765201246779989876479986899706857211326999999985
Q gi|254780181|r 76 FEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISI 144 (182)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~ 144 (182)
...................|.+....+.... ....+ .....+..-.........+|+|.|.+++..
T Consensus 74 p~~~~~~~i~~~k~Div~lG~D~~~d~~~l~--~~~~k-~G~~~~v~R~~g~~~~~~~st~~i~~~i~~ 139 (140)
T COG0615 74 PWDIKFEDIEEYKPDIVVLGDDQKFDEDDLK--YELVK-RGLFVEVKRTEGVSTCELISTSDIIKRILE 139 (140)
T ss_pred CCCCCHHHHHHHCCCEEEECCCCCCCHHHHH--HHHHH-CCCEEEEEECCCCCCCCCCCHHHHHHHHHC
T ss_conf 6546768999959999997798767768999--99997-698258984157456764564889999860
No 42
>PRK07143 hypothetical protein; Provisional
Probab=98.45 E-value=8.9e-07 Score=60.53 Aligned_cols=141 Identities=13% Similarity=0.240 Sum_probs=69.0
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCC----C-CCCCCCHHHHHHHHHHHHHHHCCCCCCCC--EEEC
Q ss_conf 599965899878489999999999748979996455888----7-66578989999999997642013355441--2420
Q gi|254780181|r 3 RKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSV----K-TKGFLSIQERSELIKQSIFHFIPDSSNRV--SVIS 75 (182)
Q Consensus 3 kigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~----k-~~~~~s~e~r~~m~~~a~~~~~~~~~~~~--~~~~ 75 (182)
+.++--|.||=+|.||-.++++|.+......+...-.|+ . .....+.++|.+.++....+......-.. ...+
T Consensus 17 ~svvtIG~FDGvH~GHq~Li~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~~~eK~~~l~~~Gvd~~~~~~F~~~~a~ls 96 (277)
T PRK07143 17 KPTFVIGGFESFHLGHLKLYKKALEISGEIVFIVVKNPENLPKNTNENFFDLNSRIQMFANLNIKNVILIDFNEELINLS 96 (277)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHCCC
T ss_conf 85999983734268999999999985799679993386436577653479999999999975999999936999997699
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCC
Q ss_conf 33333221001497079994376520124677998987647998689970685721132699999998599
Q gi|254780181|r 76 FEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISIDA 146 (182)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g~ 146 (182)
. ..............++.|.+-............. +........+-.... .-..||||.||+.++.|.
T Consensus 97 ~-e~Fi~~l~~l~~k~ivVG~Df~FG~~r~G~~~~L-k~~~~~v~iv~~~~~-~~~~ISST~IR~~l~~G~ 164 (277)
T PRK07143 97 G-EDFIEKLKKLQVDFIVVGKDFRFGKNAKWNASDL-KEFFPNVEIVEILKI-GNKKISTSLLKELIEFGD 164 (277)
T ss_pred H-HHHHHHHHHCCCCEEEECCCCEECCCCCCCHHHH-HHHCCEEEECCCEEE-CCEEECHHHHHHHHHCCC
T ss_conf 9-9999998707981999868702068988899999-973894897585987-993783899999998599
No 43
>cd02064 Flavokinase_C Riboflavin kinase (Flavokinase). This family represents the C-terminal region of the bifunctional riboflavin biosynthesis protein riboflavin kinase / FAD synthetase. These enzymes have both ATP:riboflavin. 5'-phospho transferase and ATP:FMN-adenylyltransferase activities . The C-terminal domain has FMN-adenylyltransferase activitie. They catalyse the 5'-phosphorylation of riboflavin to FMN and the adenylylation of FMN to FAD . A domain has been identified in the N-terminal region that is well conserved in all the bacterial FAD synthetases.This domain has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases .
Probab=98.40 E-value=1e-06 Score=60.19 Aligned_cols=141 Identities=17% Similarity=0.117 Sum_probs=67.6
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHC---C-EEEEECCCCCC-------C-CCCCCCHHHHHHHHHHHHHHHCCCCCC--CC
Q ss_conf 965899878489999999999748---9-79996455888-------7-665789899999999976420133554--41
Q gi|254780181|r 6 VYTGSFDPITNGHMDIIIQALSFV---E-DLVIAIGCNSV-------K-TKGFLSIQERSELIKQSIFHFIPDSSN--RV 71 (182)
Q Consensus 6 ifgGsFdPiH~GHL~ia~~a~~~~---D-~vii~~~~~p~-------k-~~~~~s~e~r~~m~~~a~~~~~~~~~~--~~ 71 (182)
+--|.||=+|.||..+++++.+.. + ...+++-.++| + .....+.++|.+.++....+......- ..
T Consensus 2 v~iG~FDGvHlGHq~Li~~~~~~a~~~~~~~~v~tF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~gid~~~~i~F~~~~ 81 (179)
T cd02064 2 VAIGNFDGVHLGHQALIKRAKEIARERGLPSAVLTFEPHPREVLRPEKAPKLLTTLEEKLELLAALGVDYLLVLPFDKEF 81 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHH
T ss_conf 89962654158999999999999998299769999628808971888787025899999999986699999984478888
Q ss_pred EEECCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-CCCEEEEEC-CCCCCCCCHHHHHHHHHCCC
Q ss_conf 2420333332210014970799943765201246779989876479-986899706-85721132699999998599
Q gi|254780181|r 72 SVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCP-EIATIALFA-KESSRYVTSTLIRHLISIDA 146 (182)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~i~l~~-~~~~~~ISST~IR~~i~~g~ 146 (182)
...+...-............++.|.+-..............+.... ..+...+.. ...-..||||.||+.++.|.
T Consensus 82 ~~ls~~~Fi~~~l~~l~~~~iVvG~Df~FG~~r~G~~~~L~~~~~~~~~~v~~i~~~~~~~~~ISSs~IR~~i~~G~ 158 (179)
T cd02064 82 ASLSAEEFVKDLLVKLNAKHVVVGFDFRFGKGRSGNAELLRELGEKYGFEVEIVPPVTIDGEKVSSTRIREALAEGD 158 (179)
T ss_pred HCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCEEEEECCEEECCCEEEHHHHHHHHHCCC
T ss_conf 63999999998741479639997773025789887999999999872964999376960891673899999998599
No 44
>PRK13670 hypothetical protein; Provisional
Probab=98.38 E-value=4e-06 Score=56.66 Aligned_cols=44 Identities=20% Similarity=0.351 Sum_probs=32.4
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHH--CCEEEEECCCCCCCCCC
Q ss_conf 9659996589987848999999999974--89799964558887665
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHMDIIIQALSF--VEDLVIAIGCNSVKTKG 45 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL~ia~~a~~~--~D~vii~~~~~p~k~~~ 45 (182)
|+-+||-- =|||+|+||+.-++++.+. .|.|+++.++|--.+..
T Consensus 1 Mk~~GIIa-EYNPFHnGH~Yhi~~ar~~t~ad~iIaVMSGnFvQRGE 46 (390)
T PRK13670 1 MKATGIIV-EYNPFHNGHLYHLNQAKKLTKADVTIAVMSGNFVQRGE 46 (390)
T ss_pred CCEEEEEE-EECCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf 96368996-10797410899999999753998799994388510887
No 45
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=98.30 E-value=9.4e-05 Score=48.47 Aligned_cols=156 Identities=17% Similarity=0.168 Sum_probs=84.1
Q ss_pred CCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECC---------CCCC
Q ss_conf 9987848999999999974897999645588876657898999999999764201335544124203---------3333
Q gi|254780181|r 10 SFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISF---------EGLA 80 (182)
Q Consensus 10 sFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~---------~~~~ 80 (182)
|=||+|.||-.+.+.|++..|-+++-|-..+.| ....+.+.|..-.+.....+............. -...
T Consensus 193 TRNP~HraHE~l~k~Ale~~dgLli~PlvG~~K-~gD~~~~~r~~~y~~l~~~y~p~~~~~l~~~p~~mryAGPREAl~H 271 (390)
T PRK04149 193 TRNPPHRAHEYLQKCALEIVDGLLLNPLVGETK-SGDIPAEVRMEAYEALLKGYYPKDRVILSVTPAAMRYAGPREAIFH 271 (390)
T ss_pred ECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCC-CCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHH
T ss_conf 268886689999999998539889966626888-8888989999999999973589873799733664244797999999
Q ss_pred CCCCCCCCCEEEEEECCCC--CCHHHHHHHHHHHHHHCC-C--CCEE------E--------EE-----CCCCCCCCCHH
Q ss_conf 2210014970799943765--201246779989876479-9--8689------9--------70-----68572113269
Q gi|254780181|r 81 VNLAKDISAQVIVRGLRDM--TDFDYEMRMTSVNRCLCP-E--IATI------A--------LF-----AKESSRYVTST 136 (182)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~-~--~~~i------~--------l~-----~~~~~~~ISST 136 (182)
...-.....-.+++|-+-. ..|........+.....+ + .+.+ + .. .......||+|
T Consensus 272 AiiRkN~GcThfIVGRDHAGvg~fY~~y~Aq~if~~~~~~elgI~~v~f~~~~Yc~~~~~~~~~~~cph~~~~~~~iSGT 351 (390)
T PRK04149 272 ALVRKNYGCTHFIVGRDHAGVGDYYGPYDAQEIFDEFTPEELGITPLKFEEAFYCPKCGGMASTKTCPHGKEDRVRLSGT 351 (390)
T ss_pred HHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCCEECCCCCCCCCCCEEEECHH
T ss_conf 99998759966997666677323569178899998658655733898657138985678375035489987846863799
Q ss_pred HHHHHHHCCCC-HHHCCCHHHHHHHHHHHHH
Q ss_conf 99999985999-5583999999999999998
Q gi|254780181|r 137 LIRHLISIDAD-ITSFVPDPVCVFLKNIVIS 166 (182)
Q Consensus 137 ~IR~~i~~g~~-i~~lVP~~V~~yIk~~~~~ 166 (182)
+||++++.|+. -..+.-+.|++.|.+-+..
T Consensus 352 ~iR~~l~~G~~~P~~f~rpEV~~iL~~~y~~ 382 (390)
T PRK04149 352 KVREMLREGERPPPEFSRPEVAEVLIKGLKK 382 (390)
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 9999997789899544728999999999997
No 46
>pfam05636 DUF795 Protein of unknown function (DUF795). This family consists of several bacterial proteins of unknown function.
Probab=98.27 E-value=1.6e-05 Score=53.08 Aligned_cols=44 Identities=18% Similarity=0.336 Sum_probs=32.3
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHC--CEEEEECCCCCCCCCC
Q ss_conf 96599965899878489999999999748--9799964558887665
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHMDIIIQALSFV--EDLVIAIGCNSVKTKG 45 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL~ia~~a~~~~--D~vii~~~~~p~k~~~ 45 (182)
|+-+||-- =|||+|+||+.-++++.+.+ |.++++.++|--.+..
T Consensus 1 Mk~~GIIa-EYNPFHnGH~Yhi~~ar~~~~~d~iIavMSGnFvQRGE 46 (389)
T pfam05636 1 MKATGIIV-EYNPFHNGHLYHLNEAKKLTKADVKIAVMSGNFVQRGE 46 (389)
T ss_pred CCEEEEEE-EECCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf 96368996-10797401899999999864998599994488521886
No 47
>cd00517 ATPS ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be a monomer, a hom
Probab=98.25 E-value=8.4e-05 Score=48.74 Aligned_cols=152 Identities=14% Similarity=0.178 Sum_probs=81.8
Q ss_pred CCCCCCHHHHHHHHHHHHHC---CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCC---------
Q ss_conf 99878489999999999748---979996455888766578989999999997642013355441242033---------
Q gi|254780181|r 10 SFDPITNGHMDIIIQALSFV---EDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISFE--------- 77 (182)
Q Consensus 10 sFdPiH~GHL~ia~~a~~~~---D~vii~~~~~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~--------- 77 (182)
|=||+|.||-.+.+.|++.+ |-+++-|-..+.| ....+.+.|..-.+..+..+..............
T Consensus 164 TRNp~HraHe~l~~~Ale~~~~~~~lli~P~vG~~k-~gD~~~~~r~~~y~~l~~~y~p~~~~~l~~~p~~mryAGPrEA 242 (356)
T cd00517 164 TRNPMHRAHEELMKRALERLLENDGLLLHPLVGWTK-PGDVPDEVRMRAYEALLEEYYLPERTVLAILPLAMRYAGPREA 242 (356)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCC-CCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHH
T ss_conf 189997479999999999714387189973336788-8898989999999999970689860899842454355555889
Q ss_pred CCCCCCCCCCCCEEEEEECCCCC-----CHHHHHHHHHHHHHHCC-C--CCEEE--------------EEC-----CCCC
Q ss_conf 33322100149707999437652-----01246779989876479-9--86899--------------706-----8572
Q gi|254780181|r 78 GLAVNLAKDISAQVIVRGLRDMT-----DFDYEMRMTSVNRCLCP-E--IATIA--------------LFA-----KESS 130 (182)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~-~--~~~i~--------------l~~-----~~~~ 130 (182)
......-.....-.+++|-+-.. .|........+...+.+ + .+.+. ... ....
T Consensus 243 l~hAiiRkN~GcthfiVGRDHAG~g~~~~fY~~y~aq~i~~~~~~~~l~I~~v~~~~~~Yc~~c~~~~~~~~cph~~~~~ 322 (356)
T cd00517 243 LWHAIIRKNYGATHFIVGRDHAGVGHPEDYYGPYDAQEIFKKYPMGELGIEPVPFREAAYCPKCLGMVFADTCPHHKEDF 322 (356)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCEEEEECCCCEEEECCCCCCCCCCE
T ss_conf 99999999769965887676678888757788415689998548667863799766369986779188766679997745
Q ss_pred CCCCHHHHHHHHHCCCC-HHHCCCHHHHHHHHH
Q ss_conf 11326999999985999-558399999999999
Q gi|254780181|r 131 RYVTSTLIRHLISIDAD-ITSFVPDPVCVFLKN 162 (182)
Q Consensus 131 ~~ISST~IR~~i~~g~~-i~~lVP~~V~~yIk~ 162 (182)
..||+|+||++++.|+. -..+..+.|++.|++
T Consensus 323 ~~iSGt~iR~~L~~G~~pP~~f~rpeV~~~L~~ 355 (356)
T cd00517 323 LNISGTKMREMLREGEKPPEWFMRPEVAKVLRE 355 (356)
T ss_pred EECCHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 851789999999776989965772999999975
No 48
>pfam01747 ATP-sulfurylase ATP-sulfurylase. This family consists of ATP-sulfurylase or sulfate adenylyltransferase EC:2.7.7.4 some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase pfam01583. Both enzymes are required for PAPS (phosphoadenosine-phosphosulfate) synthesis from inorganic sulphate. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulfate APS from ATP and inorganic sulphate.
Probab=98.22 E-value=6.9e-05 Score=49.25 Aligned_cols=152 Identities=14% Similarity=0.205 Sum_probs=82.5
Q ss_pred CCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECC---------CCCC
Q ss_conf 9987848999999999974897999645588876657898999999999764201335544124203---------3333
Q gi|254780181|r 10 SFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISF---------EGLA 80 (182)
Q Consensus 10 sFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~---------~~~~ 80 (182)
|-||+|.||-.|.+.|++.+|-+++.|-..+.|. ...+.+.|..-.+.....+............. ....
T Consensus 124 Trnp~Hr~He~i~~~a~e~~~~lli~plvG~~k~-gD~~~~~r~~~~~~l~~~y~p~~~~~l~~l~~~mryAGPrEallh 202 (310)
T pfam01747 124 TRNPMHRAHEYLMKRALEKGDGLLLHPLVGETKP-GDIPAEVRVRAYEALLENYFPPDRVLLAPLPLAMRYAGPREALLH 202 (310)
T ss_pred ECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHH
T ss_conf 1788866899999999974694699852267778-877879999999999973389752999614764022671788999
Q ss_pred CCCCCCCCCEEEEEECCCC--CCHHHHHHHHHHHHHHCCC--CCEEE--------------EECC-----CCCCCCCHHH
Q ss_conf 2210014970799943765--2012467799898764799--86899--------------7068-----5721132699
Q gi|254780181|r 81 VNLAKDISAQVIVRGLRDM--TDFDYEMRMTSVNRCLCPE--IATIA--------------LFAK-----ESSRYVTSTL 137 (182)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~--~~~i~--------------l~~~-----~~~~~ISST~ 137 (182)
...-.....-.+++|-+-. ..|........+......+ .+.+. .... .....||+|+
T Consensus 203 AiirkN~GcthfivGrdHAG~g~fY~~~~aq~i~~~~~~~l~I~iv~~~~~~Yc~~~~~~v~~~~c~h~~~~~~~isgt~ 282 (310)
T pfam01747 203 AIIRKNYGCTHFIVGRDHAGVGDYYGPYDAQEIFDEFAGELGIEPVPFREAFYCKKCGGMVSTKTCPHGKEDRLFISGTK 282 (310)
T ss_pred HHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCEEECCCCEEEECCCCCCCCCCEECCCHHH
T ss_conf 99999769972655665578423589168899998566346841586475388655682876355799755404417899
Q ss_pred HHHHHHCCCC-HHHCCCHHHHHHHHH
Q ss_conf 9999985999-558399999999999
Q gi|254780181|r 138 IRHLISIDAD-ITSFVPDPVCVFLKN 162 (182)
Q Consensus 138 IR~~i~~g~~-i~~lVP~~V~~yIk~ 162 (182)
||++++.|+. -..+.++.|++.|.+
T Consensus 283 iR~~L~~G~~~P~~f~rpeV~~~L~~ 308 (310)
T pfam01747 283 LREMLREGEEPPEWFSRPEVAAVLRE 308 (310)
T ss_pred HHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 99999877989956685899999997
No 49
>KOG3351 consensus
Probab=98.21 E-value=6.5e-06 Score=55.36 Aligned_cols=140 Identities=24% Similarity=0.253 Sum_probs=79.5
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHH-CCEEEEECCCCCC-CCCC----CCCHHHHHHHHHHHHHHHCCCCCCCCEEECCC
Q ss_conf 9996589987848999999999974-8979996455888-7665----78989999999997642013355441242033
Q gi|254780181|r 4 KAVYTGSFDPITNGHMDIIIQALSF-VEDLVIAIGCNSV-KTKG----FLSIQERSELIKQSIFHFIPDSSNRVSVISFE 77 (182)
Q Consensus 4 igifgGsFdPiH~GHL~ia~~a~~~-~D~vii~~~~~p~-k~~~----~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~ 77 (182)
.+..|||||-+|+||-.+..-|+.+ -|+++++++..+. |++. ..+.+.|.+-+..-..................
T Consensus 144 ~~alGGTFDrLH~gHKvLLs~aa~la~~~lVvGV~d~elL~kK~~~Eliepie~R~~~V~~Fl~~IKp~l~~~~vpi~Dp 223 (293)
T KOG3351 144 VVALGGTFDRLHDGHKVLLSVAAELASDRLVVGVTDDELLKKKVLKELIEPIEERKEHVSNFLKSIKPDLNVRVVPIHDP 223 (293)
T ss_pred EEEECCCHHHHCCCHHHHHHHHHHHHHCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 67731100222140588999999873144899854769987767899863499999999999986487736889963368
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCHHHHHHHHHCCCCH
Q ss_conf 3332210014970799943765201246779989876479-9868997068572113269999999859995
Q gi|254780181|r 78 GLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCP-EIATIALFAKESSRYVTSTLIRHLISIDADI 148 (182)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~i~l~~~~~~~~ISST~IR~~i~~g~~i 148 (182)
.-..........+++.......-.. .+-....+-+.+ ....+-+..+.. .+|||++|+.-..-.++
T Consensus 224 --~GPt~~d~elE~lVVS~ET~~Ga~a-VNr~R~E~glseLai~vVell~~~~--kls~t~~~~~kvSSaS~ 290 (293)
T KOG3351 224 --FGPTITDPELEALVVSEETKTGATA-VNRKRVERGLSELAIYVVELLYDAQ--KLSSTENRELKVSSASI 290 (293)
T ss_pred --CCCCCCCCCCEEEEEEECCCCCHHH-HHHHHHHCCCCHHEEEEEEECCCHH--HCCHHHHHHHHHCCCCC
T ss_conf --7887667760489986022150556-6288887697600089886306732--31646777765213452
No 50
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=98.14 E-value=6.2e-05 Score=49.53 Aligned_cols=128 Identities=16% Similarity=0.134 Sum_probs=80.7
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCC----C--CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEC
Q ss_conf 6599965899878489999999999748979996455888----7--665789899999999976420133554412420
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSV----K--TKGFLSIQERSELIKQSIFHFIPDSSNRVSVIS 75 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~----k--~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~ 75 (182)
.||+.-.|.||=+|-||+...++|.++.|.+++...+... | ..+..+.++|..++...-.- +.....
T Consensus 340 ~~ivfTng~fd~lh~gh~~~l~~a~~~~d~liv~~n~d~sv~rlkg~~rp~~~~~~r~~~l~~l~~v-------d~v~~f 412 (473)
T PRK11316 340 EKIVMTNGCFDILHAGHVSYLANARKLGDRLIVAVNSDASVKRLKGEGRPVNPLERRMAVLAALEAV-------DWVVPF 412 (473)
T ss_pred CEEEEECCCHHHCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCC-------CEEEEC
T ss_conf 9899977700104678999999999719979999523666876169999988999999999665635-------689977
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHC
Q ss_conf 333332210014970799943765201246779989876479986899706857211326999999985
Q gi|254780181|r 76 FEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISI 144 (182)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~ 144 (182)
...+.........+..++.|-+....-.... . ..+ ....+..++..... .|+|.|-++|++
T Consensus 413 ~~~tp~~li~~~~pd~~~kg~dy~~~~~~~~--~-~v~--~~gg~v~~~~~~~~---~stt~ii~ki~~ 473 (473)
T PRK11316 413 EEDTPQRLIAEILPDLLVKGGDYKPEEIAGS--K-EVW--ANGGEVKVLNFEDG---CSTTNIIEKIRQ 473 (473)
T ss_pred CCCCHHHHHHHHCCCEEEECCCCCCCEECCH--H-HHH--HCCCEEEEECCCCC---CCHHHHHHHHHC
T ss_conf 9999899998759989998888887833774--8-998--65998999658899---477999999749
No 51
>PRK13671 hypothetical protein; Provisional
Probab=98.13 E-value=5.7e-05 Score=49.73 Aligned_cols=42 Identities=19% Similarity=0.342 Sum_probs=31.5
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHC--CEEEEECCCCCCCCC
Q ss_conf 6599965899878489999999999748--979996455888766
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSFV--EDLVIAIGCNSVKTK 44 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~~--D~vii~~~~~p~k~~ 44 (182)
|.+||-- =|||+|+||+.-++++.+.+ |.++++.++|--.+.
T Consensus 1 mavGIIa-EYNPFHnGH~Yhi~qar~~~~ad~iIavMSGnFvQRG 44 (298)
T PRK13671 1 MAIGIIA-EYNPFHNGHIYQINYIKNKFPNEKIIIILSGKYTQRG 44 (298)
T ss_pred CCEEEEE-EECCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 9347997-2079740189999999986599859999458852088
No 52
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase; InterPro: IPR006409 These sequences describe glycerol-3-phosphate cytidyltransferase, also called CDP-glycerol pyrophosphorylase. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase (2.7.7.14 from EC). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.; GO: 0046872 metal ion binding, 0047348 glycerol-3-phosphate cytidylyltransferase activity, 0019350 teichoic acid biosynthetic process, 0005737 cytoplasm.
Probab=98.08 E-value=8.5e-06 Score=54.69 Aligned_cols=120 Identities=19% Similarity=0.214 Sum_probs=78.1
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHCCEEEEECCC---CCCCCCC-CCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCC
Q ss_conf 965899878489999999999748979996455---8887665-789899999999976420133554412420333332
Q gi|254780181|r 6 VYTGSFDPITNGHMDIIIQALSFVEDLVIAIGC---NSVKTKG-FLSIQERSELIKQSIFHFIPDSSNRVSVISFEGLAV 81 (182)
Q Consensus 6 ifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~---~p~k~~~-~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~~~~~ 81 (182)
|-.||||=.|.||+.+.++|.++.|.++|..+- |-.|.+. ..+.|.|...++...--+ ............
T Consensus 2 l~~GTFDlLH~gHi~lL~~AK~~G~~LiV~lSTD~FN~~K~K~ay~~Ye~RK~~LE~IRYVD------~ViPE~~W~~K~ 75 (126)
T TIGR01518 2 LTYGTFDLLHYGHINLLKKAKQLGDYLIVALSTDEFNLEKKKKAYQSYEKRKLVLESIRYVD------LVIPEKSWDQKS 75 (126)
T ss_pred EECCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHC------EECCCCCHHHHH
T ss_conf 12040556668999999998625765888862221200157533235346566665433220------003798834567
Q ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHH
Q ss_conf 210014970799943765201246779989876479986899706857211326999999
Q gi|254780181|r 82 NLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHL 141 (182)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~ 141 (182)
.+........++.|.+=...|+. ++.-.++.+.++++ +.+ .||||.|++.
T Consensus 76 ~~I~~f~iD~~vMGDDW~G~FDF-------L~~~~~n~~v~YlP-Rt~--~vS~~~IK~E 125 (126)
T TIGR01518 76 LDIAEFDIDVFVMGDDWKGKFDF-------LKEEFTNLKVLYLP-RTK--EVSTTKIKKE 125 (126)
T ss_pred HHHHHCCCCEEEECCCCCCCCCH-------HHCCCCCCEEEECC-CCC--CCCCCCCCCC
T ss_conf 66765177558864778882101-------11037763588727-899--8551000103
No 53
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=98.05 E-value=1.4e-05 Score=53.45 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=34.8
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHC--CEEE-EECCCCCCCCCC-CCCHHHHHHHH
Q ss_conf 96599965899878489999999999748--9799-964558887665-78989999999
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHMDIIIQALSFV--EDLV-IAIGCNSVKTKG-FLSIQERSELI 56 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL~ia~~a~~~~--D~vi-i~~~~~p~k~~~-~~s~e~r~~m~ 56 (182)
||-+||.- =|||+|+||+.++++|.+++ |.++ ++++.-++...+ ..+--.|..|.
T Consensus 1 M~~~Gii~-eyNPfHnGH~y~l~~Ar~~~~~d~~i~~msgdf~qRgepai~~k~~r~k~a 59 (358)
T COG1323 1 MKSIGIIA-EYNPFHNGHQYHINKAREEFKGDEIIAVMSGDFTQRGEPAIGHKWERKKMA 59 (358)
T ss_pred CCCEEEEE-EECCCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHCCCCCCCCHHHHHHHH
T ss_conf 97147886-536776658999999887526771489842513305997406489998888
No 54
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=98.02 E-value=4.6e-05 Score=50.30 Aligned_cols=143 Identities=15% Similarity=0.141 Sum_probs=68.0
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHC---C-EEEEECCCC-------CCCC-CCCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 599965899878489999999999748---9-799964558-------8876-657898999999999764201335544
Q gi|254780181|r 3 RKAVYTGSFDPITNGHMDIIIQALSFV---E-DLVIAIGCN-------SVKT-KGFLSIQERSELIKQSIFHFIPDSSNR 70 (182)
Q Consensus 3 kigifgGsFdPiH~GHL~ia~~a~~~~---D-~vii~~~~~-------p~k~-~~~~s~e~r~~m~~~a~~~~~~~~~~~ 70 (182)
.-++--|.||=+|.||-.+++++.+.. + ...+++-.+ |.+. ....+.++|.+.++....+........
T Consensus 12 ~svvaIG~FDGvH~GHq~li~~~~~~a~~~~~~s~v~TF~phP~~vl~~~~~~~~l~~~~ek~~ll~~~Gid~~~~~~F~ 91 (303)
T PRK05627 12 GCVLTIGNFDGVHRGHQALLARAREIARERGLPSVVMTFEPHPREFFAPDSAPARLTPLRDKAELLAELGVDYVLVLPFD 91 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCC
T ss_conf 83899985823468999999999999998499789999569999981998886124999999999997399879985676
Q ss_pred --CEEECCCCCCCC-CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC--CCCEEEEEC-CCCCCCCCHHHHHHHHHC
Q ss_conf --124203333322-10014970799943765201246779989876479--986899706-857211326999999985
Q gi|254780181|r 71 --VSVISFEGLAVN-LAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCP--EIATIALFA-KESSRYVTSTLIRHLISI 144 (182)
Q Consensus 71 --~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~i~l~~-~~~~~~ISST~IR~~i~~ 144 (182)
....+...-... .........++.|.+-........+.... +.+.. +.+...+.. ...-..||||.||+.+..
T Consensus 92 ~~~a~ls~e~Fi~~iL~~~l~~k~ivvG~Df~FG~~r~G~~~~L-~~~~~~~g~~v~~v~~~~~~~~~ISSt~IR~~i~~ 170 (303)
T PRK05627 92 EEFAKLSAEEFIEDLLVKGLNVKFVVVGDDFRFGKKRAGDFELL-QEAGKEFGFEVEVVPEVCEDGERVSSTAIRQALAE 170 (303)
T ss_pred HHHHCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHH-HHHHHHCCCCEEECCCEEECCEEEEHHHHHHHHHC
T ss_conf 78765999999999887267844999757733367888899999-99998749618977567538967609999999985
Q ss_pred CC
Q ss_conf 99
Q gi|254780181|r 145 DA 146 (182)
Q Consensus 145 g~ 146 (182)
|.
T Consensus 171 G~ 172 (303)
T PRK05627 171 GD 172 (303)
T ss_pred CC
T ss_conf 98
No 55
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=97.98 E-value=9.2e-05 Score=48.52 Aligned_cols=143 Identities=16% Similarity=0.123 Sum_probs=66.9
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHC----CEEEEECCCCCCC----C----CCCCCHHHHHHHHHHHHHHHCCCC--C
Q ss_conf 599965899878489999999999748----9799964558887----6----657898999999999764201335--5
Q gi|254780181|r 3 RKAVYTGSFDPITNGHMDIIIQALSFV----EDLVIAIGCNSVK----T----KGFLSIQERSELIKQSIFHFIPDS--S 68 (182)
Q Consensus 3 kigifgGsFdPiH~GHL~ia~~a~~~~----D~vii~~~~~p~k----~----~~~~s~e~r~~m~~~a~~~~~~~~--~ 68 (182)
...+--|-||=+|.||..+..+|.+.. -.+.++.-.+++. . ....+.++|.+.++...-+..... .
T Consensus 16 ~~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~gvd~~~v~~F~ 95 (304)
T COG0196 16 GCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLAGYGVDALVVLDFD 95 (304)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECC
T ss_conf 85899974776156699999999999987289669999369978870877772003798999999986699689999678
Q ss_pred CCCEEECCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCC-CCCCCCHHHHHHHHHCCC
Q ss_conf 4412420333332210014970799943765201246779989876479-98689970685-721132699999998599
Q gi|254780181|r 69 NRVSVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCP-EIATIALFAKE-SSRYVTSTLIRHLISIDA 146 (182)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~i~l~~~~-~~~~ISST~IR~~i~~g~ 146 (182)
...-..+...-.............+.|.+-...-....... ..+.+.. ..+...+..-. .-.-||||.||+.+..|.
T Consensus 96 ~~fa~ls~~~Fv~~lv~~l~~k~ivvG~DF~FGk~~~g~~~-~L~~~~~~gf~v~~v~~~~~~~~~iSSt~IR~~L~~gd 174 (304)
T COG0196 96 LEFANLSAEEFVELLVEKLNVKHIVVGFDFRFGKGRQGNAE-LLRELGQKGFEVTIVPKINEEGIRISSTAIRQALREGD 174 (304)
T ss_pred HHHHHCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHH-HHHHHCCCCCEEEEECCEECCCCEECHHHHHHHHHCCC
T ss_conf 65763997899999984458728999336416888889899-99973557853999454722795782599999876489
No 56
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=97.97 E-value=0.00072 Score=43.20 Aligned_cols=157 Identities=16% Similarity=0.205 Sum_probs=83.2
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCC----
Q ss_conf 5999658998784899999999997489799964558887665789899999999976420133554412420333----
Q gi|254780181|r 3 RKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISFEG---- 78 (182)
Q Consensus 3 kigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~~---- 78 (182)
|+.+=.-|+||+|.||-.+-++|++..|-+++-|-... ++....+.|.|.+.-+.....+.... ....+..-
T Consensus 184 k~vvafQTRNp~HraHEyl~K~Al~~vdgllv~plVG~-tk~gD~~~e~rm~~ye~l~~~Yyp~d---r~~Ls~~~~aMR 259 (397)
T COG2046 184 KTVVAFQTRNPPHRAHEYLQKRALEKVDGLLVHPLVGA-TKPGDIPDEVRMEYYEALLKHYYPPD---RVFLSVLPAAMR 259 (397)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECC-CCCCCCHHHHHHHHHHHHHHHCCCCC---CEEEEECHHHHH
T ss_conf 08999962898318899999999986581799752226-66898508999999999997379987---489984378864
Q ss_pred -------CCCC-CCCCCCCEEEEEECCCC--CCHHHHHHHHHHHHHHCCCC--CEEEE-------------------ECC
Q ss_conf -------3322-10014970799943765--20124677998987647998--68997-------------------068
Q gi|254780181|r 79 -------LAVN-LAKDISAQVIVRGLRDM--TDFDYEMRMTSVNRCLCPEI--ATIAL-------------------FAK 127 (182)
Q Consensus 79 -------~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~--~~i~l-------------------~~~ 127 (182)
.++- .-+.+..-.+++|-+-. ..|....+...+.....++. ..+++ -.+
T Consensus 260 yagPrEa~~HaIIRkNyGcTHfIVGRDHAGvG~yYg~Y~aq~if~~f~~eLgI~p~~f~e~~YC~~c~~~~~~~~cph~~ 339 (397)
T COG2046 260 YAGPREALLHAIIRKNYGCTHFIVGRDHAGVGDYYGPYDAQEIFDEFSPELGITPVFFEEFFYCPKCGQMVSTKTCPHGD 339 (397)
T ss_pred HCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCEEECCCCCCCCCCCCCCCCC
T ss_conf 04837888999998505970266567778765667862079999836603583788602316413205773424579997
Q ss_pred CCCCCCCHHHHHHHHHCCC-CHHHCCCHHHHHHHHHH
Q ss_conf 5721132699999998599-95583999999999999
Q gi|254780181|r 128 ESSRYVTSTLIRHLISIDA-DITSFVPDPVCVFLKNI 163 (182)
Q Consensus 128 ~~~~~ISST~IR~~i~~g~-~i~~lVP~~V~~yIk~~ 163 (182)
....++|+|.+|++++.|. .-..+-=+.|++.|.+-
T Consensus 340 ~~~~~~SGt~lR~~Lr~G~~PP~~f~RPEV~~vl~k~ 376 (397)
T COG2046 340 EHHLHISGTKLREMLRAGVKPPEEFSRPEVADVLRKS 376 (397)
T ss_pred CCEEEECCHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 5238874189999997578897013638899999873
No 57
>TIGR00083 ribF riboflavin biosynthesis protein RibF; InterPro: IPR002606 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme , the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family . The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases . This entry represents the bifunctional enzyme, FAD synthetase / riboflavin kinase.; GO: 0003919 FMN adenylyltransferase activity, 0008531 riboflavin kinase activity, 0009231 riboflavin biosynthetic process.
Probab=97.85 E-value=3.2e-05 Score=51.23 Aligned_cols=136 Identities=14% Similarity=0.160 Sum_probs=64.2
Q ss_pred EEECCCCCCCCHHHHHHHHHHH--HHC-----CEEEEECCCCCC-----CC-C-CCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9965899878489999999999--748-----979996455888-----76-6-57898999999999764201335544
Q gi|254780181|r 5 AVYTGSFDPITNGHMDIIIQAL--SFV-----EDLVIAIGCNSV-----KT-K-GFLSIQERSELIKQSIFHFIPDSSNR 70 (182)
Q Consensus 5 gifgGsFdPiH~GHL~ia~~a~--~~~-----D~vii~~~~~p~-----k~-~-~~~s~e~r~~m~~~a~~~~~~~~~~~ 70 (182)
.++-|.||=+|.||..+++.+. +.. ...++.....|. +. + ..++.+.+...+.............+
T Consensus 1 ~L~IG~FDGlH~GHq~l~~~~~df~~A~e~~L~~avllf~~~P~~~~~~~~~P~rL~pL~~k~~~~~~~~~~~~~v~~Fd 80 (296)
T TIGR00083 1 SLAIGYFDGLHLGHQALLQELKDFQKAEEKGLPVAVLLFEPHPSEQFSGLKAPARLTPLEEKARQLEALGVEVLVVVKFD 80 (296)
T ss_pred CCEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECC
T ss_conf 91011566523689999986355676876199479998628873440466788645684899999998537738999623
Q ss_pred CEE--ECCCCCCCCCC-CCCCCEEEEEECCCCCCHHHHHHHHH---HHHHHCCCCCEEEEECCCCC----CCCCHHHHHH
Q ss_conf 124--20333332210-01497079994376520124677998---98764799868997068572----1132699999
Q gi|254780181|r 71 VSV--ISFEGLAVNLA-KDISAQVIVRGLRDMTDFDYEMRMTS---VNRCLCPEIATIALFAKESS----RYVTSTLIRH 140 (182)
Q Consensus 71 ~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~i~l~~~~~~----~~ISST~IR~ 140 (182)
... .+...-.-... .......+++|. +|........ +.+.... ++++....... .-||||.||+
T Consensus 81 ~~~a~l~A~~F~~~~~~~~L~~~~l~VG~----DF~FG~~r~g~~~~l~~~~~--~~~~~v~~~~~~~~d~riSSs~IR~ 154 (296)
T TIGR00083 81 EEFANLSAKQFIDQLLVKHLRVKFLVVGD----DFRFGKDRQGDFLLLQLAGN--ETIFTVIVKQLFCQDKRISSSAIRQ 154 (296)
T ss_pred HHHHHCCHHHHHHHHHHCCCCCCEEEECC----CCCCCCCCCCHHHHHHHHCC--CEEEEEEECCCEECCEEEEHHHHHH
T ss_conf 57652486555898743267756888616----61336678760578774048--5479997466133260451568987
Q ss_pred HHHCCC
Q ss_conf 998599
Q gi|254780181|r 141 LISIDA 146 (182)
Q Consensus 141 ~i~~g~ 146 (182)
++++|+
T Consensus 155 aL~~g~ 160 (296)
T TIGR00083 155 ALKNGD 160 (296)
T ss_pred HHHCCC
T ss_conf 642484
No 58
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.71 E-value=0.0011 Score=42.06 Aligned_cols=153 Identities=13% Similarity=0.067 Sum_probs=80.4
Q ss_pred CCCCCCHHHHHHHHHHHHHCCE-EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEE--------CCCCCC
Q ss_conf 9987848999999999974897-9996455888766578989999999997642013355441242--------033333
Q gi|254780181|r 10 SFDPITNGHMDIIIQALSFVED-LVIAIGCNSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVI--------SFEGLA 80 (182)
Q Consensus 10 sFdPiH~GHL~ia~~a~~~~D~-vii~~~~~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~--------~~~~~~ 80 (182)
|=||+|.||..+.+.|++.+|- |++-|-...-| ....+.+.|..-.+.+...++.......... ..-...
T Consensus 194 TRNPlHraH~~l~~~A~~~~~a~lLihPlvG~tk-~gDi~~~~rvr~y~a~~~~yp~~~~~l~~lP~~Mr~AGPREAl~H 272 (568)
T PRK05537 194 TRNPLHRAHEELTKRAAREVQANLLIHPVVGMTK-PGDIDHFTRVRCYEALLDYYPPATTLLSLLPLAMRMAGPREALWH 272 (568)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCC-CCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHH
T ss_conf 4889977889999999996598399836768888-887775899999999995579872687036765454681899999
Q ss_pred CCCCCCCCCEEEEEECCC--------CCCHHHHHHHHHHHHHHCCC--C------CEEEE------------ECCCCCCC
Q ss_conf 221001497079994376--------52012467799898764799--8------68997------------06857211
Q gi|254780181|r 81 VNLAKDISAQVIVRGLRD--------MTDFDYEMRMTSVNRCLCPE--I------ATIAL------------FAKESSRY 132 (182)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~--~------~~i~l------------~~~~~~~~ 132 (182)
...-..+..-.+++|-+. ...|...............+ . ..+++ ........
T Consensus 273 AiiRkNyGcTHfIVGRDHAGpg~~~~g~~fygpy~Aq~l~~~~~~Elgi~~V~~~~~~Y~~~~~~y~p~~~~~~~~~~~~ 352 (568)
T PRK05537 273 GIIRRNYGCTHFIVGRDHAGPGKDSRGKPFYGPYDAQELFAKYQDEIGITMVPFKEMVYVQEKAQYVPVNEVPQGATVLD 352 (568)
T ss_pred HHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEECCCCCEEEECCCCEEEECHHCCCCCCCCC
T ss_conf 99886169863343367788888988876888667799999748860980224532467546683766010489763057
Q ss_pred CCHHHHHHHHHCCCCH-HHCCCHHHHHHHHHH
Q ss_conf 3269999999859995-583999999999999
Q gi|254780181|r 133 VTSTLIRHLISIDADI-TSFVPDPVCVFLKNI 163 (182)
Q Consensus 133 ISST~IR~~i~~g~~i-~~lVP~~V~~yIk~~ 163 (182)
||+|++|++++.|++| ..+-+++|++-+++-
T Consensus 353 isgtelr~~L~~G~~IPeWft~PeV~~eLrr~ 384 (568)
T PRK05537 353 ISGTELRRRLREGLEIPEWFSFPEVVAELRRT 384 (568)
T ss_pred CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 87789999986799899553877899999985
No 59
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II; InterPro: IPR011914 RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in some other genome. Domain I (IPR011913 from INTERPRO) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .; GO: 0016773 phosphotransferase activity alcohol group as acceptor, 0016779 nucleotidyltransferase activity, 0005975 carbohydrate metabolic process.
Probab=97.59 E-value=0.0011 Score=42.19 Aligned_cols=127 Identities=19% Similarity=0.213 Sum_probs=82.8
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCC------CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEC
Q ss_conf 6599965899878489999999999748979996455888------7665789899999999976420133554412420
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSV------KTKGFLSIQERSELIKQSIFHFIPDSSNRVSVIS 75 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~------k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~ 75 (182)
.||+.-.|=||=+|-||...-++|.++.|.++|..++.-. .+.+..+.++|.+ +-.+.... +.....
T Consensus 11 ~kvVFTNGCFDiLH~GHV~YL~~Ar~LGD~LvVGvNSD~SV~RLKG~~RPi~~e~~Ra~-vLaaL~~V------D~VV~F 83 (144)
T TIGR02199 11 KKVVFTNGCFDILHAGHVSYLQQARALGDRLVVGVNSDASVKRLKGETRPINSEEDRAE-VLAALSSV------DYVVIF 83 (144)
T ss_pred CCEEECCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHCCCCCCCCCCCHHHHHH-HHHCCCCE------EEEEEC
T ss_conf 97785177310102113768999997198668986170455305768989157767899-98447850------037863
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 33333221001497079994376520124677998987647998689970685721132699999998
Q gi|254780181|r 76 FEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLIS 143 (182)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~ 143 (182)
...+..+.....-+..++.|-|...+-..+.. +.+ ...-+..++.-..+ .|+|.|=++|+
T Consensus 84 ~EDTP~~LI~~~~PdilVKGGDY~~~~~vg~~---~V~--~yGG~V~~l~f~~g---~STT~ii~ki~ 143 (144)
T TIGR02199 84 DEDTPEELIEELKPDILVKGGDYKLEELVGAE---LVE--SYGGQVVLLPFVEG---RSTTAIIEKIL 143 (144)
T ss_pred CCCCHHHHHHHHCCCEEEECCCCCCCCCCCHH---HHH--HCCCEEEEEEEECC---CCCHHHHHHHH
T ss_conf 89896899986296278504435855442448---998--62997989852179---84078999982
No 60
>PTZ00308 ethanolamine-phosphate cytidylytransferase; Provisional
Probab=97.57 E-value=0.00059 Score=43.71 Aligned_cols=53 Identities=23% Similarity=0.365 Sum_probs=32.3
Q ss_pred ECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCC----CCCCCCCCCHHHHHHHHHHH
Q ss_conf 658998784899999999997489799964558----88766578989999999997
Q gi|254780181|r 7 YTGSFDPITNGHMDIIIQALSFVEDLVIAIGCN----SVKTKGFLSIQERSELIKQS 59 (182)
Q Consensus 7 fgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~----p~k~~~~~s~e~r~~m~~~a 59 (182)
.-|-||=+|.||....++|.++.|++++++.+. ..|..+..+.++|.++++..
T Consensus 16 ~DG~fDl~H~GH~~~l~QAk~lg~~LiVGV~sDe~i~~~Kg~pVm~~~ER~~~v~~c 72 (353)
T PTZ00308 16 VDGCFDMLHFGHANALRQARALGDELFVGCHSDEEIMRNKGPPVMHQEERYEALRAC 72 (353)
T ss_pred EECCCHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHCCCCCCCCHHHHHHHHHCC
T ss_conf 716442103888999999998599899996888999952899868889999999616
No 61
>PTZ00308 ethanolamine-phosphate cytidylytransferase; Provisional
Probab=97.24 E-value=0.0033 Score=39.25 Aligned_cols=133 Identities=15% Similarity=0.112 Sum_probs=71.3
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCC----CCCCC--CCCCHHHHHHHHHHHHHHHCCCCCCCCEEEC
Q ss_conf 65999658998784899999999997489799964558----88766--5789899999999976420133554412420
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCN----SVKTK--GFLSIQERSELIKQSIFHFIPDSSNRVSVIS 75 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~----p~k~~--~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~ 75 (182)
.||..--|.||=+|.||+...++|.++.|.++++.... ..|.. +..+..+|...+... .. .+......
T Consensus 192 ~kIVYvDG~FDLFH~GHi~~L~~ak~~g~yLIVGv~~D~~v~~~KG~nyPImnl~ER~l~vl~C-ky-----VDeVi~~a 265 (353)
T PTZ00308 192 DRIVYVDGSFDLFHIGHIRVLQKARELGDYLIVGVHEDQVVNEQKGSNYPIMNLNERVLGVLSC-RY-----VDEVVIGA 265 (353)
T ss_pred CEEEEEECCHHCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHCCCCCCCCCHHHHHHHHHHH-CC-----CCEEEECC
T ss_conf 9799980860226778999999998519989999578189897448998866799999987620-22-----56266589
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCHHH-HHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCC
Q ss_conf 33333221001497079994376520124-677998987647998689970685721132699999998599
Q gi|254780181|r 76 FEGLAVNLAKDISAQVIVRGLRDMTDFDY-EMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISIDA 146 (182)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g~ 146 (182)
.................+-|......... ...-....+ ...+|...+.. ..+|.+.|=+||.++.
T Consensus 266 P~~~t~~~i~~~~id~V~hG~~~~~~~~~~~~DpY~~pK-----~~Gif~~i~s~-~~itT~~IV~RIiknr 331 (353)
T PTZ00308 266 PFDVTKEVIDSLHINVVVGGKFSDLVNEEGGSDPYEVPK-----AMGIFKEVDSG-CDLTTDSIVDRVVKNR 331 (353)
T ss_pred CCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHH-----HCCCEEECCCC-CCCCHHHHHHHHHHHH
T ss_conf 986789999867998898288665566778788244178-----76975834888-9978999999999749
No 62
>KOG2803 consensus
Probab=97.06 E-value=0.0022 Score=40.34 Aligned_cols=56 Identities=23% Similarity=0.374 Sum_probs=46.2
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCC----CCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9658998784899999999997489799964558----8876657898999999999764
Q gi|254780181|r 6 VYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCN----SVKTKGFLSIQERSELIKQSIF 61 (182)
Q Consensus 6 ifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~----p~k~~~~~s~e~r~~m~~~a~~ 61 (182)
-.-|-||-+|.||-..+.+|..+-|++++.+.+. -.|..+.++.|+|.+|++....
T Consensus 12 w~DGCfDm~HyGHanaLrQAkalGdkLivGVHsDeeI~~nKGpPV~t~eERy~~v~~ikW 71 (358)
T KOG2803 12 WADGCFDMVHYGHANALRQAKALGDKLIVGVHSDEEITLNKGPPVFTDEERYEMVKAIKW 71 (358)
T ss_pred EECCCHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHCCCCCCCCHHHHHHHHHHCCH
T ss_conf 852511232121258778999848848999526698872589986668999999860201
No 63
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase; InterPro: IPR005216 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase converting the inactive thiol form of the enzyme to the active form. ; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity.
Probab=96.61 E-value=0.014 Score=35.46 Aligned_cols=161 Identities=17% Similarity=0.155 Sum_probs=86.3
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCEEE-EECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCC
Q ss_conf 5999658998784899999999997489799-964558887665789899999999976420133554412420333332
Q gi|254780181|r 3 RKAVYTGSFDPITNGHMDIIIQALSFVEDLV-IAIGCNSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSVISFEGLAV 81 (182)
Q Consensus 3 kigifgGsFdPiH~GHL~ia~~a~~~~D~vi-i~~~~~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~~~~~ 81 (182)
|+|-.--.-+|+.+||-.+++++...+|.+. ++... ....++.++|..++.....+...................
T Consensus 144 ~~g~~~~~~~p~~~g~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~y~~~~~~~ 219 (342)
T TIGR00124 144 KIGSIVLNANPFTLGHRYLIEQAARQCDWLHLFVVKE----DASLFSYDDRFELVKQGIADLSNVTLHPGSAYIISRATF 219 (342)
T ss_pred HHEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEECC----CCCCCCHHHHHHHHHHHCCCCCCEEEECCCHHEEHHHHC
T ss_conf 2112244156432313678887763067268888604----321033056789986310244422543461020001102
Q ss_pred CCCCCC-------------------------CCEEEEEECCCCCCHHHHH--HHHHHHHHH---CCCCCEEEEE---CCC
Q ss_conf 210014-------------------------9707999437652012467--799898764---7998689970---685
Q gi|254780181|r 82 NLAKDI-------------------------SAQVIVRGLRDMTDFDYEM--RMTSVNRCL---CPEIATIALF---AKE 128 (182)
Q Consensus 82 ~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~--~~~~~~~~l---~~~~~~i~l~---~~~ 128 (182)
...... ..-..+.|........... ......... .|..+.+.+. ...
T Consensus 220 p~y~~~~~~~~~~~~~~~d~~~~~~~~~~~lg~~~~~~g~~p~~~~~~~y~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 299 (342)
T TIGR00124 220 PGYFLKEQGVVDDCYTEIDLKLFRLKLAPALGITHRFVGTEPLCPVTALYNQKLKYWLEEPGLDAPPIEVVEIPRKLAAG 299 (342)
T ss_pred CCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCC
T ss_conf 30232100001122324568889887656642223210443110345665567788764136777630122233344214
Q ss_pred CCCCCCHHHHHHHHHCCC--CHHHCCCHHHHHHHHHHHHHH
Q ss_conf 721132699999998599--955839999999999999986
Q gi|254780181|r 129 SSRYVTSTLIRHLISIDA--DITSFVPDPVCVFLKNIVISL 167 (182)
Q Consensus 129 ~~~~ISST~IR~~i~~g~--~i~~lVP~~V~~yIk~~~~~~ 167 (182)
....+|++.+|+.+.++. .|..+||+....|+.+.+...
T Consensus 300 d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 340 (342)
T TIGR00124 300 DLGPISASTVRELLAKGDWAALAPLVPPTTLHFLQNLLEEL 340 (342)
T ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 42100167899887301057787640056899999876652
No 64
>KOG2803 consensus
Probab=96.60 E-value=0.021 Score=34.42 Aligned_cols=51 Identities=24% Similarity=0.449 Sum_probs=38.1
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCC----CCCCC--CCCCHHHHH
Q ss_conf 5999658998784899999999997489799964558----88766--578989999
Q gi|254780181|r 3 RKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCN----SVKTK--GFLSIQERS 53 (182)
Q Consensus 3 kigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~----p~k~~--~~~s~e~r~ 53 (182)
|+.-.-|.||-+|-||++..+.|..++|.+++.+... ..|.. +..+..+|.
T Consensus 199 kvVYvdGaFDLFH~GHl~~Le~ak~lgdyLIvGI~~D~~vneykgs~~PiMnl~ER~ 255 (358)
T KOG2803 199 KVVYVDGAFDLFHAGHLDFLEKAKRLGDYLIVGIHTDQTVNEYKGSNYPIMNLHERV 255 (358)
T ss_pred CEEEECCCHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHCCCCCCCCHHHHHH
T ss_conf 289974760021232499999987616836998604742233315777410089988
No 65
>cd02158 PanC_ATPS PanC_ATPS Pantothenate synthetase (PanC) and ATP-sulfurylase (ATPS) share a similar dinucleotide-binding domain.
Probab=96.55 E-value=0.01 Score=36.39 Aligned_cols=57 Identities=16% Similarity=0.240 Sum_probs=40.9
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCC-------CCCHHHHHHHHHHHH
Q ss_conf 5999658998784899999999997489799964558887665-------789899999999976
Q gi|254780181|r 3 RKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKG-------FLSIQERSELIKQSI 60 (182)
Q Consensus 3 kigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~k~~~-------~~s~e~r~~m~~~a~ 60 (182)
+||++ .|=.++|.||+.++++|.+..|.+++-+-.||.+-.. +.+.+.-.+.++.+.
T Consensus 16 ~I~~V-pTMG~LH~GHlsLi~~A~~~~~~vvvsifVNp~QF~~~~D~~~YPr~~e~D~~ll~~~~ 79 (183)
T cd02158 16 TIGAV-PTMGPLHEGHLSLIKRAKKENDGVVVSIFVNPTQFGDKEDLDPYPRTLEADIALLEKYG 79 (183)
T ss_pred EEEEE-CCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHCCCCHHHHHHHHHHCC
T ss_conf 69998-08873769999999999863992899963378777860146547987788999999759
No 66
>pfam06574 FAD_syn FAD synthetase. This family corresponds to the N terminal domain of the bifunctional enzyme riboflavin kinase / FAD synthetase. These enzymes have both ATP:riboflavin 5'-phospho transferase and ATP:FMN-adenylyltransferase activity. They catalyse the 5'-phosphorylation of riboflavin to FMN and the adenylylation of FMN to FAD. This domain is thought to have the flavin mononucleotide (FMN) adenylyltransferase activity.
Probab=95.72 E-value=0.036 Score=33.04 Aligned_cols=60 Identities=22% Similarity=0.268 Sum_probs=36.9
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHH---CCE-EEEECCCCCC-------CC-CCCCCHHHHHHHHHHHHHH
Q ss_conf 59996589987848999999999974---897-9996455888-------76-6578989999999997642
Q gi|254780181|r 3 RKAVYTGSFDPITNGHMDIIIQALSF---VED-LVIAIGCNSV-------KT-KGFLSIQERSELIKQSIFH 62 (182)
Q Consensus 3 kigifgGsFdPiH~GHL~ia~~a~~~---~D~-vii~~~~~p~-------k~-~~~~s~e~r~~m~~~a~~~ 62 (182)
..++--|.||=+|.||-.+++.+.+. .+. ..++.-.++| +. ....+.++|.+.++....+
T Consensus 7 ~svvtiG~FDGvH~GHq~li~~~~~~a~~~~~~~~viTF~phP~~~l~~~~~~~~l~~~~~K~~~l~~~Gid 78 (158)
T pfam06574 7 GSVVTIGNFDGVHLGHQALIAHAKEIARELGLPSVVVTFEPHPREVFAPDKAPERLTTLREKIELLAELGVD 78 (158)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCHHCCCHHHHHHHHHHCCCC
T ss_conf 819999746531589999999999999982997899996498778608766641015799999999966999
No 67
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=95.29 E-value=0.24 Score=28.16 Aligned_cols=129 Identities=16% Similarity=0.212 Sum_probs=71.7
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCC-C-----CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEC
Q ss_conf 6599965899878489999999999748979996455888-7-----665789899999999976420133554412420
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSV-K-----TKGFLSIQERSELIKQSIFHFIPDSSNRVSVIS 75 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~-k-----~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~ 75 (182)
.|++.--|-||=+|-||.....+|.++.|.+++...+.-. | ..+..+.++|...+ .+.... +.....
T Consensus 332 ~~vvfTNGcFDIlH~GHvsyL~~Ar~lgd~Livg~NsDaSvkrLKG~~RPin~~~~Ra~vL-a~L~~V------D~vV~F 404 (467)
T COG2870 332 KKVVFTNGCFDILHAGHVTYLAQARALGDRLIVGVNSDASVKRLKGESRPINSEEDRAAVL-AALESV------DLVVIF 404 (467)
T ss_pred CEEEEECCHHHHCCCCHHHHHHHHHHHCCEEEEEECCCHHHHHHCCCCCCCCCHHHHHHHH-HHCCCC------EEEEEE
T ss_conf 7388733403323453788999998638859999537124455239998888278789998-631540------089982
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCC
Q ss_conf 3333322100149707999437652012467799898764799868997068572113269999999859
Q gi|254780181|r 76 FEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISID 145 (182)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~~~ISST~IR~~i~~g 145 (182)
...+........-+..++.|-+....-.... .. .+...-+...+.-.. ..|-|.|=++++.+
T Consensus 405 ~EdTP~~LI~~~~PdilVKGgDy~~~~i~g~---~~--v~~~GG~v~~i~f~~---g~STt~ii~ki~~~ 466 (467)
T COG2870 405 DEDTPEELIEAVKPDILVKGGDYKIEKIVGA---DI--VEAYGGEVLLIPFEE---GKSTTKIIEKIRAK 466 (467)
T ss_pred CCCCHHHHHHHHCCCEEECCCCCCHHHCCCH---HH--HHHCCCEEEEEECCC---CCCHHHHHHHHHCC
T ss_conf 7999899998738665870688872440323---66--553397599986446---87389999998615
No 68
>TIGR00339 sopT sulfate adenylyltransferase; InterPro: IPR002650 This entry consists of ATP-sulphurylase or sulphate adenylyltransferase (2.7.7.4 from EC0 some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate . ATP sulphurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate .; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation.
Probab=94.64 E-value=0.24 Score=28.16 Aligned_cols=53 Identities=11% Similarity=0.107 Sum_probs=35.3
Q ss_pred CCCCCCHHHHHHHHHHHHH-------CCEEEEECCCCCCCCCCCCCHHHHHHHHH-HHHHHH
Q ss_conf 9987848999999999974-------89799964558887665789899999999-976420
Q gi|254780181|r 10 SFDPITNGHMDIIIQALSF-------VEDLVIAIGCNSVKTKGFLSIQERSELIK-QSIFHF 63 (182)
Q Consensus 10 sFdPiH~GHL~ia~~a~~~-------~D~vii~~~~~p~k~~~~~s~e~r~~m~~-~a~~~~ 63 (182)
|=||+|.||-.|...|++. .+.|+|=|-....| ....+.+.|.+.-+ .....+
T Consensus 219 tRNP~HraH~~L~~~A~~~~~~~~~~~~~~L~Hp~~G~tK-~gDiP~~~R~~~y~~vl~~~y 279 (424)
T TIGR00339 219 TRNPMHRAHEELTKRAAERLLELIEPNAGVLVHPLVGLTK-PGDIPAEVRMRAYEAVLKEGY 279 (424)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC-CCCCCHHHHHHHHHHHHHCCC
T ss_conf 5886216789999989988765201589478815557888-888866899999999874268
No 69
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=94.25 E-value=0.1 Score=30.40 Aligned_cols=61 Identities=11% Similarity=0.175 Sum_probs=43.7
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCC-------CCCCHHHHHHHHHHHHHHH
Q ss_conf 6599965899878489999999999748979996455888766-------5789899999999976420
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTK-------GFLSIQERSELIKQSIFHF 63 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~k~~-------~~~s~e~r~~m~~~a~~~~ 63 (182)
.+||+.+ |--=.|.||+.++++|.+.+|.+++-+--||..-+ -+.+.+.-.+.++.+..+.
T Consensus 21 ~~Ig~VP-TMGaLH~GHlsLI~~A~~~~d~vvVSIFVNP~QF~~~eD~~~YPr~~e~D~~~l~~~gvD~ 88 (283)
T PRK00380 21 KRIGFVP-TMGNLHEGHLSLVREARAEADVVVVSIFVNPLQFGPNEDLDRYPRTLEADLAKLEAAGVDL 88 (283)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCE
T ss_conf 9399985-8722758999999999974992999985060105987540128987899999999869989
No 70
>cd00560 PanC PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=94.06 E-value=0.12 Score=29.99 Aligned_cols=60 Identities=13% Similarity=0.206 Sum_probs=42.8
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCC-------CCCHHHHHHHHHHHHHH
Q ss_conf 65999658998784899999999997489799964558887665-------78989999999997642
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKG-------FLSIQERSELIKQSIFH 62 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~k~~~-------~~s~e~r~~m~~~a~~~ 62 (182)
.+||+.+ |--=+|-||+.++++|.+..|.+++-+--||..-+. +.+.+.-.+.++.+..+
T Consensus 22 ~~ig~VP-TMGaLH~GHlsLi~~A~~~~d~vvvSIFVNP~QF~~~eD~~~YPr~~~~D~~~l~~~gvd 88 (276)
T cd00560 22 KSIGFVP-TMGALHEGHLSLIKRAKKENDKVVVSIFVNPTQFGPKEDLDNYPRTLEADLKLLEKAGVD 88 (276)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 9099973-862265899999999998599289998447102698502320899778999999976998
No 71
>pfam02569 Pantoate_ligase Pantoate-beta-alanine ligase. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (EC:6.3.2.1) catalyses the formation of pantothenate from pantoate and alanine.
Probab=93.59 E-value=0.095 Score=30.56 Aligned_cols=60 Identities=15% Similarity=0.199 Sum_probs=41.1
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCC-------CCCHHHHHHHHHHHHHHH
Q ss_conf 5999658998784899999999997489799964558887665-------789899999999976420
Q gi|254780181|r 3 RKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKG-------FLSIQERSELIKQSIFHF 63 (182)
Q Consensus 3 kigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~k~~~-------~~s~e~r~~m~~~a~~~~ 63 (182)
+||+. .|--=+|.||+.++++|.+..|.+++-+--||..-+. +.+.+.-.+.++.+..+.
T Consensus 23 ~i~~V-PTMGaLH~GHlsLI~~A~~~~~~vivSIFVNP~QF~~~eD~~~YPr~~~~D~~ll~~~~vD~ 89 (280)
T pfam02569 23 RIGFV-PTMGALHEGHLSLIDRARKENDVVVVSIFVNPTQFGPNEDLDAYPRTLERDLALLEKEGVDI 89 (280)
T ss_pred CEEEE-CCCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCHHHHCCCCHHHHHHHHHHCCCCE
T ss_conf 09998-48731658999999999975991999996163136986304327998799999999869989
No 72
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=92.90 E-value=0.15 Score=29.43 Aligned_cols=59 Identities=14% Similarity=0.182 Sum_probs=40.0
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCC-------CCCHHHHHHHHHHHHHH
Q ss_conf 5999658998784899999999997489799964558887665-------78989999999997642
Q gi|254780181|r 3 RKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKG-------FLSIQERSELIKQSIFH 62 (182)
Q Consensus 3 kigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~k~~~-------~~s~e~r~~m~~~a~~~ 62 (182)
.||+. .|--=+|-|||.++++|.+.+|.+++-+.-||..-.+ +.+.+.-.+.++.+..+
T Consensus 21 ~ig~V-PTMG~LH~GHlsLi~~A~~~~d~vvvSIFVNP~QF~~~eD~~~YPr~~~~D~~ll~~~gvd 86 (512)
T PRK13477 21 TIGFV-PTMGALHQGHLSLIRRARQENDVVLVSIFVNPLQFGPNEDLERYPRTLEADRELCESAGVD 86 (512)
T ss_pred EEEEE-CCCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 48998-8972375899999999998699699997278777898645776799989999999968999
No 73
>KOG2804 consensus
Probab=92.86 E-value=0.14 Score=29.53 Aligned_cols=55 Identities=18% Similarity=0.379 Sum_probs=41.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCEE--EEECCCCC----CCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 5899878489999999999748979--99645588----8766578989999999997642
Q gi|254780181|r 8 TGSFDPITNGHMDIIIQALSFVEDL--VIAIGCNS----VKTKGFLSIQERSELIKQSIFH 62 (182)
Q Consensus 8 gGsFdPiH~GHL~ia~~a~~~~D~v--ii~~~~~p----~k~~~~~s~e~r~~m~~~a~~~ 62 (182)
-|-||-+|.||..-.++|.+.|--| +|+.++.- .|.....+..+|.+.++....-
T Consensus 69 DGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De~Thk~KG~TVm~e~ERyE~lrHCryV 129 (348)
T KOG2804 69 DGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDELTHKFKGRTVMNENERYEALRHCRYV 129 (348)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 3048776466799999998738873799861373323310673004757777776520236
No 74
>TIGR00018 panC pantoate--beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis . Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway .; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process.
Probab=90.10 E-value=0.48 Score=26.35 Aligned_cols=48 Identities=19% Similarity=0.281 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCC-------CCHHHHHHHHHHH
Q ss_conf 87848999999999974897999645588876657-------8989999999997
Q gi|254780181|r 12 DPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGF-------LSIQERSELIKQS 59 (182)
Q Consensus 12 dPiH~GHL~ia~~a~~~~D~vii~~~~~p~k~~~~-------~s~e~r~~m~~~a 59 (182)
==.|.||..++++|.+..|-+++-+--||..-.+. -+.+.-++.++.+
T Consensus 34 G~LH~GH~sL~~~a~~End~vvvSIFVNP~QFgp~EDl~~YPR~l~~D~~l~E~l 88 (310)
T TIGR00018 34 GALHEGHLSLIDRAVKENDLVVVSIFVNPLQFGPNEDLEAYPRDLEEDLALLEKL 88 (310)
T ss_pred CCHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHCCCCHHHHHHHHHHC
T ss_conf 1015678999999986688589999757878888754544579858999999838
No 75
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=88.72 E-value=1.1 Score=24.34 Aligned_cols=61 Identities=15% Similarity=0.235 Sum_probs=42.0
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCC-------CCCHHHHHHHHHHHHHHH
Q ss_conf 65999658998784899999999997489799964558887665-------789899999999976420
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKG-------FLSIQERSELIKQSIFHF 63 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~k~~~-------~~s~e~r~~m~~~a~~~~ 63 (182)
++||+.+ |-.=.|-||+.+++.|.+..|.|++.+--||..-.+ +.+.+.-++.++....+.
T Consensus 22 k~Vg~VP-TMG~LH~GHlsLVr~A~~~~d~VVVSIFVNP~QFg~~EDl~~YPR~l~~D~~~l~~~gvd~ 89 (285)
T COG0414 22 KRVGLVP-TMGNLHEGHLSLVRRAKKENDVVVVSIFVNPLQFGPNEDLDRYPRTLERDLELLEKEGVDI 89 (285)
T ss_pred CEEEEEC-CCCCCCHHHHHHHHHHHHCCCEEEEEEEECHHHCCCCHHHHHCCCCHHHHHHHHHHCCCCE
T ss_conf 8799982-7742116799999998640993999998671314985245547988899999998669868
No 76
>TIGR00398 metG methionyl-tRNA synthetase; InterPro: IPR002304 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Methionyl-tRNA synthetase (6.1.1.10 from EC) is an alpha 2 dimer that belongs to class Ia. In some species (archaea, eubacteria and eukaryota) a coding sequence, similar to the C-term end of MetRS, is present as an independent gene which is a tRNA binding domain as a dimer. In eubacteria, MetRS can also be splitted in two sub-classes corresponding to the presence of one or two CXXC domain specific to zinc binding. The crystal structures of a number of methionyl-tRNA synthases are known , , .; GO: 0000166 nucleotide binding, 0004825 methionine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006431 methionyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=80.69 E-value=1.4 Score=23.68 Aligned_cols=51 Identities=12% Similarity=0.006 Sum_probs=28.3
Q ss_pred CCCCHHHHH-H-------HHHHHHHCCEEEEECCCCCC------CCC-CCCC-HHHHHHHHHHHHHH
Q ss_conf 878489999-9-------99999748979996455888------766-5789-89999999997642
Q gi|254780181|r 12 DPITNGHMD-I-------IIQALSFVEDLVIAIGCNSV------KTK-GFLS-IQERSELIKQSIFH 62 (182)
Q Consensus 12 dPiH~GHL~-i-------a~~a~~~~D~vii~~~~~p~------k~~-~~~s-~e~r~~m~~~a~~~ 62 (182)
+++|+||+. - +++..-...+|+++.|..-| |.. ...+ +++-+......+..
T Consensus 12 g~pHlGH~~st~~~AD~~~RY~~~~G~~v~f~cGTDEHG~kI~~~A~~~g~tqP~~~vd~~~~~f~~ 78 (573)
T TIGR00398 12 GKPHLGHAYSTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTQPKELVDKYHEEFKK 78 (573)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 7112103667778999999998528974789851344687888869870899648999999999999
No 77
>KOG4238 consensus
Probab=80.45 E-value=4.7 Score=20.46 Aligned_cols=41 Identities=20% Similarity=0.262 Sum_probs=27.9
Q ss_pred CCCCCCCHHHHHHHHHCCCC-HHHCCCHHHHHHHHHHHHHHH
Q ss_conf 57211326999999985999-558399999999999999865
Q gi|254780181|r 128 ESSRYVTSTLIRHLISIDAD-ITSFVPDPVCVFLKNIVISLV 168 (182)
Q Consensus 128 ~~~~~ISST~IR~~i~~g~~-i~~lVP~~V~~yIk~~~~~~~ 168 (182)
..+.+||.|..|.+.++|++ -.++.-+...+.+-+-+-.++
T Consensus 584 edfe~isgtrmr~lar~g~~ppegfmap~aw~vlt~yyksle 625 (627)
T KOG4238 584 EDFEFISGTRMRKLAREGENPPEGFMAPKAWKVLTDYYKSLE 625 (627)
T ss_pred CCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 110013306577787669999743357338999999998753
No 78
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=79.14 E-value=2.7 Score=21.86 Aligned_cols=53 Identities=23% Similarity=0.358 Sum_probs=30.2
Q ss_pred EEEEECCCCCC----CCHHHHHHHHHHH---HHCCEEEEECCCC------CC-C--CCCCCCHHHHHHHH
Q ss_conf 59996589987----8489999999999---7489799964558------88-7--66578989999999
Q gi|254780181|r 3 RKAVYTGSFDP----ITNGHMDIIIQAL---SFVEDLVIAIGCN------SV-K--TKGFLSIQERSELI 56 (182)
Q Consensus 3 kigifgGsFdP----iH~GHL~ia~~a~---~~~D~vii~~~~~------p~-k--~~~~~s~e~r~~m~ 56 (182)
++.+|-| ||| +|.||+..+.... ..--.++++.|+. |. | .....+.++..+-.
T Consensus 32 ~~~~y~G-~DPTa~sLH~Ghlv~l~~L~~fq~~Gh~~i~lvGg~T~~IGDPSGk~~~R~~l~~e~i~~N~ 100 (402)
T PRK05912 32 PLRIKLG-FDPTAPDLHLGHLVVLLKLRRFQDLGHKPIFLIGDFTGMIGDPSGKSATRKLLTREQVLENA 100 (402)
T ss_pred CEEEEEE-ECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 8079981-46998752065299999999999869964999677524501899986556688999999999
No 79
>PRK06217 hypothetical protein; Validated
Probab=77.15 E-value=6 Score=19.85 Aligned_cols=57 Identities=18% Similarity=0.106 Sum_probs=40.1
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHH-------CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9659996589987848999999999974-------89799964558887665789899999999976420
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHMDIIIQALSF-------VEDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHF 63 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL~ia~~a~~~-------~D~vii~~~~~p~k~~~~~s~e~r~~m~~~a~~~~ 63 (182)
||||-|+|.| =-|--.+++...+. .|.++..|+..|+.. ..+.++|..++..+....
T Consensus 1 m~rI~i~G~s----GsGkSTla~~La~~l~~~~~~lD~~~W~p~~~pf~~--kR~~~eR~~ll~~~~~~~ 64 (185)
T PRK06217 1 MMRIHITGAS----GSGTTTLGAALAEALDLPHLDTDDFFWLPTDPPFTT--KREPEERLRLLLEDLRDS 64 (185)
T ss_pred CCEEEEECCC----CCCHHHHHHHHHHHHCCCEEECCCCEECCCCCCCCC--CCCHHHHHHHHHHHHHCC
T ss_conf 9679997899----887899999999975989686455535689997564--379999999999986379
No 80
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=67.54 E-value=4.8 Score=20.39 Aligned_cols=33 Identities=18% Similarity=0.128 Sum_probs=21.2
Q ss_pred CCCCHHHHH--H-----HHHHHHHCCEEEEECCCCCCCCC
Q ss_conf 878489999--9-----99999748979996455888766
Q gi|254780181|r 12 DPITNGHMD--I-----IIQALSFVEDLVIAIGCNSVKTK 44 (182)
Q Consensus 12 dPiH~GHL~--i-----a~~a~~~~D~vii~~~~~p~k~~ 44 (182)
+|+|+||+. | |.+....-.+|+++.+...|-.+
T Consensus 18 g~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~ 57 (558)
T COG0143 18 GPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTK 57 (558)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCH
T ss_conf 9864136788878999999998269758999514787778
No 81
>PRK08666 5'-methylthioadenosine phosphorylase; Validated
Probab=66.18 E-value=3.3 Score=21.36 Aligned_cols=36 Identities=19% Similarity=0.250 Sum_probs=19.8
Q ss_pred CEEEEE-CCCCCCCCCHHHHHHHHHCCCCHHHC--CCHHHH
Q ss_conf 689970-68572113269999999859995583--999999
Q gi|254780181|r 120 ATIALF-AKESSRYVTSTLIRHLISIDADITSF--VPDPVC 157 (182)
Q Consensus 120 ~~i~l~-~~~~~~~ISST~IR~~i~~g~~i~~l--VP~~V~ 157 (182)
+.++.. ..|.+. +.-+||-.-+-|.|+-+| ||+.+.
T Consensus 153 ~GvY~~~~GPrfE--T~AEi~~~r~~GaDvVGMStvPEv~l 191 (261)
T PRK08666 153 GGTYVCTEGPRFE--TAAEIRMYRILGGDLVGMTQVPEAVL 191 (261)
T ss_pred CEEEEEEECCCCC--CHHHHHHHHHHCCCEECCCCCHHHHH
T ss_conf 9599998899889--79999999982899404773579999
No 82
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=63.08 E-value=12 Score=17.98 Aligned_cols=54 Identities=22% Similarity=0.272 Sum_probs=31.1
Q ss_pred EEEEECCCCCC----CCHHHHHHHHHHH---HHCCEEEEECCCC------CC---CCCCCCCHHHHHHHHH
Q ss_conf 59996589987----8489999999999---7489799964558------88---7665789899999999
Q gi|254780181|r 3 RKAVYTGSFDP----ITNGHMDIIIQAL---SFVEDLVIAIGCN------SV---KTKGFLSIQERSELIK 57 (182)
Q Consensus 3 kigifgGsFdP----iH~GHL~ia~~a~---~~~D~vii~~~~~------p~---k~~~~~s~e~r~~m~~ 57 (182)
++.+|-| ||| +|.||+..+.... ..--+++++.|+. |. +..+..+.++..+-.+
T Consensus 37 ~l~vy~G-fDPTa~sLHlGhlv~l~~L~~fq~~Gh~~i~liGg~T~~IGDPSgk~~~R~~l~~e~i~~N~~ 106 (405)
T PRK13354 37 PLTLKLG-LDPTAPDIHIGHLVVLRKLKQFQDAGHRAVILIGDFTGKIGDPTGKSKERKLLTDEQVQHNAD 106 (405)
T ss_pred CEEEEEE-ECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 4389995-469988520764999999999998699479996786542569999854566767999999999
No 83
>TIGR01915 npdG NADPH-dependent F420 reductase; InterPro: IPR010185 Members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase..
Probab=60.38 E-value=4.5 Score=20.57 Aligned_cols=32 Identities=28% Similarity=0.287 Sum_probs=18.3
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHH-----C-CEEEEEC
Q ss_conf 659996589987848999999999974-----8-9799964
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSF-----V-EDLVIAI 36 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~-----~-D~vii~~ 36 (182)
|||||+|||=| .|-=..-++|..- . .+|+|..
T Consensus 1 mkIAvLGGTGd---qG~GLALRlA~~glmPeG~~~~iIIGS 38 (233)
T TIGR01915 1 MKIAVLGGTGD---QGKGLALRLAKAGLMPEGVDNEIIIGS 38 (233)
T ss_pred CEEEEECCCCC---HHHHHHHHHHHCCCCCCCCCCCEEEEC
T ss_conf 96788448884---025699999870778787775557704
No 84
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=57.76 E-value=15 Score=17.42 Aligned_cols=12 Identities=17% Similarity=0.437 Sum_probs=5.9
Q ss_pred CEEEEECC-CCCC
Q ss_conf 97999645-5888
Q gi|254780181|r 30 EDLVIAIG-CNSV 41 (182)
Q Consensus 30 D~vii~~~-~~p~ 41 (182)
-+|-++++ +|.+
T Consensus 45 ~eV~iVvGGGni~ 57 (238)
T COG0528 45 VEVAVVVGGGNIA 57 (238)
T ss_pred CEEEEEECCCHHH
T ss_conf 6899997897899
No 85
>KOG3042 consensus
Probab=55.88 E-value=12 Score=18.08 Aligned_cols=39 Identities=15% Similarity=0.186 Sum_probs=28.9
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCC
Q ss_conf 5999658998784899999999997489799964558887
Q gi|254780181|r 3 RKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVK 42 (182)
Q Consensus 3 kigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p~k 42 (182)
+||+. -|--=.|-||+.++.++.+.-+..++-+.-||..
T Consensus 25 tIgfV-PTMG~LHeGH~SLvrqs~~~~~~tVVSIfVNP~Q 63 (283)
T KOG3042 25 TIGFV-PTMGCLHEGHASLVRQSVKENTYTVVSIFVNPSQ 63 (283)
T ss_pred EEEEE-CCCCCCCCCHHHHHHHHHHHCCEEEEEEEECHHH
T ss_conf 68775-2544323108899999886274699999966243
No 86
>cd00818 IleRS_core This is the catalytic core domain of isoleucine amino-acyl tRNA synthetases (IleRS) . This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=53.90 E-value=7 Score=19.45 Aligned_cols=30 Identities=10% Similarity=-0.177 Sum_probs=18.3
Q ss_pred CCCCHHHHH---HH----HHHHHHCCEEEEECCCCCC
Q ss_conf 878489999---99----9999748979996455888
Q gi|254780181|r 12 DPITNGHMD---II----IQALSFVEDLVIAIGCNSV 41 (182)
Q Consensus 12 dPiH~GHL~---ia----~~a~~~~D~vii~~~~~p~ 41 (182)
.|+|.||+. ++ .+....-++|++++|..-|
T Consensus 14 g~pHiGHa~~~i~aDv~aRy~Rl~G~~v~f~~GtDeH 50 (339)
T cd00818 14 GLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCH 50 (339)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
T ss_conf 8734558899999999999998069988778851440
No 87
>PRK09267 flavodoxin FldA; Validated
Probab=53.85 E-value=6.1 Score=19.77 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=16.0
Q ss_pred CCEEEEECCCCCCCCHHHH-HHHHHHHHHC
Q ss_conf 9659996589987848999-9999999748
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHM-DIIIQALSFV 29 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL-~ia~~a~~~~ 29 (182)
|||||||-||= .|.- .+|+...+.+
T Consensus 1 M~kIgIfYGS~----TGnTE~vA~~I~~~l 26 (169)
T PRK09267 1 MAKIGIFFGSD----TGNTEDIAKMIQKKL 26 (169)
T ss_pred CCEEEEEEECC----CCCHHHHHHHHHHHH
T ss_conf 97289999799----985899999999984
No 88
>cd00812 LeuRS_core This is the catalytic core domain of leucyl tRNA synthetase (LeuRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=53.73 E-value=9.7 Score=18.58 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=18.3
Q ss_pred CCCCHHHHH-------HHHHHHHHCCEEEEECCCCCC
Q ss_conf 878489999-------999999748979996455888
Q gi|254780181|r 12 DPITNGHMD-------IIIQALSFVEDLVIAIGCNSV 41 (182)
Q Consensus 12 dPiH~GHL~-------ia~~a~~~~D~vii~~~~~p~ 41 (182)
.|+|+||+. ++++..-+-.+|++++|..-+
T Consensus 13 G~~HiGH~~~~i~aDi~~Ry~Rm~G~~V~~~~G~DeH 49 (376)
T cd00812 13 GRLHVGHVRTYTIGDIIARYKRMKGYNVLFPMGFDAF 49 (376)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 7454688698999999999999559970468845656
No 89
>pfam10362 DUF2432 Cytidylyltransferase C-terminal domain (DUF2432). This is the very short, 20 residue, conserved C-terminal domain of a family of cytidylyltransferase (nicotinamide mononucleotide adenylyltransferase 3) proteins. Many members are associated with a CTP_transf_2 family pfam01467 adjacent at the N-terminal end. The function of this domain is unknown.
Probab=53.58 E-value=7.7 Score=19.20 Aligned_cols=20 Identities=10% Similarity=0.228 Sum_probs=15.2
Q ss_pred HHHCCCHHHHHHHHHHHHHH
Q ss_conf 55839999999999999986
Q gi|254780181|r 148 ITSFVPDPVCVFLKNIVISL 167 (182)
Q Consensus 148 i~~lVP~~V~~yIk~~~~~~ 167 (182)
++.+||+.|.+||++.-.|.
T Consensus 1 l~~LVp~~I~~YI~~e~lY~ 20 (26)
T pfam10362 1 LKDLVPPEIREYILSEGLYR 20 (26)
T ss_pred CCCCCCHHHHHHHHHHHHHH
T ss_conf 97647889999998611453
No 90
>PRK10200 putative racemase; Provisional
Probab=48.64 E-value=8.6 Score=18.89 Aligned_cols=29 Identities=10% Similarity=-0.198 Sum_probs=15.7
Q ss_pred CCEEEEECCCCCCCCHHHHH--HHHHHHHHCC
Q ss_conf 96599965899878489999--9999997489
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHMD--IIIQALSFVE 30 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL~--ia~~a~~~~D 30 (182)
|++|||.||-= |--..... +.+.....+|
T Consensus 1 Mk~IGIlGGmG-p~AT~~yy~~i~~~t~a~~~ 31 (230)
T PRK10200 1 MKTIGLLGGMS-WESTIPYYRLINEGIKQRLG 31 (230)
T ss_pred CCEEEECCCCC-HHHHHHHHHHHHHHHHHHHC
T ss_conf 96789826679-89999999999999988718
No 91
>TIGR00456 argS arginyl-tRNA synthetase; InterPro: IPR001278 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Arginyl-tRNA synthetase (6.1.1.19 from EC) has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available . ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=48.56 E-value=9.8 Score=18.58 Aligned_cols=15 Identities=13% Similarity=0.166 Sum_probs=9.1
Q ss_pred HHHCCCHHHHHHHHH
Q ss_conf 558399999999999
Q gi|254780181|r 148 ITSFVPDPVCVFLKN 162 (182)
Q Consensus 148 i~~lVP~~V~~yIk~ 162 (182)
....-|..+++|+.+
T Consensus 534 ~~~~~p~~l~~Yly~ 548 (600)
T TIGR00456 534 AEEREPHVLTNYLYE 548 (600)
T ss_pred HHHCCCHHHHHHHHH
T ss_conf 985471888999999
No 92
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=46.96 E-value=11 Score=18.24 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=19.3
Q ss_pred CCCCHHHHH--H-----HHHHHHHCCEEEEECCCCCC
Q ss_conf 878489999--9-----99999748979996455888
Q gi|254780181|r 12 DPITNGHMD--I-----IIQALSFVEDLVIAIGCNSV 41 (182)
Q Consensus 12 dPiH~GHL~--i-----a~~a~~~~D~vii~~~~~p~ 41 (182)
+++|.||+. + |++....-.+|++++|..-|
T Consensus 15 g~~HiGH~~~~i~aDv~aRy~Rl~G~~v~f~~GtDeH 51 (666)
T PRK00133 15 GPIHLGHLLEYIQADIWVRYQRMRGHEVLFVCADDAH 51 (666)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 9843124676999999999998369954984742788
No 93
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=46.81 E-value=6.8 Score=19.53 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=15.4
Q ss_pred EEEECCCCCCCCHHHHHHHHHHH----HHC-CEEEEECCCCC
Q ss_conf 99965899878489999999999----748-97999645588
Q gi|254780181|r 4 KAVYTGSFDPITNGHMDIIIQAL----SFV-EDLVIAIGCNS 40 (182)
Q Consensus 4 igifgGsFdPiH~GHL~ia~~a~----~~~-D~vii~~~~~p 40 (182)
+-++++| |-|--+++-.+. +.+ |..+++++..|
T Consensus 233 v~iaaST----H~GEeei~l~~~~~l~~~~~~~llIlVPRHp 270 (419)
T COG1519 233 VWVAAST----HEGEEEIILDAHQALKKQFPNLLLILVPRHP 270 (419)
T ss_pred EEEEECC----CCCHHHHHHHHHHHHHHHCCCCEEEEECCCH
T ss_conf 5999547----7863889999999999638995699915875
No 94
>KOG0436 consensus
Probab=40.79 E-value=29 Score=15.80 Aligned_cols=30 Identities=13% Similarity=0.299 Sum_probs=18.8
Q ss_pred CCCCHHHHH--HHHHHHH---H--CCEEEEECCCCCC
Q ss_conf 878489999--9999997---4--8979996455888
Q gi|254780181|r 12 DPITNGHMD--IIIQALS---F--VEDLVIAIGCNSV 41 (182)
Q Consensus 12 dPiH~GHL~--ia~~a~~---~--~D~vii~~~~~p~ 41 (182)
-|+|.|||. ++-.|+. . -+.+++.++-.-|
T Consensus 52 AaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEH 88 (578)
T KOG0436 52 AAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEH 88 (578)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 8851457999999999999986358806860377754
No 95
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=39.40 E-value=30 Score=15.67 Aligned_cols=53 Identities=21% Similarity=0.252 Sum_probs=28.0
Q ss_pred EEEECC---CCCCCCHHHHHHHHHHHHH---CCEEEEECCCCCCCCCCC-CCHHHHHHHH
Q ss_conf 999658---9987848999999999974---897999645588876657-8989999999
Q gi|254780181|r 4 KAVYTG---SFDPITNGHMDIIIQALSF---VEDLVIAIGCNSVKTKGF-LSIQERSELI 56 (182)
Q Consensus 4 igifgG---sFdPiH~GHL~ia~~a~~~---~D~vii~~~~~p~k~~~~-~s~e~r~~m~ 56 (182)
+.+|-| |=+-+|.||+..+...... --++++..+...-.-..+ ...+.|..+.
T Consensus 33 ~~~Y~GfDPTa~slHlGhlv~l~kL~~fQ~aGh~~ivLigd~ta~IgDpsGk~e~r~~l~ 92 (401)
T COG0162 33 LRVYIGFDPTAPSLHLGHLVPLMKLRRFQDAGHKPIVLIGDATAMIGDPSGKSEERKLLT 92 (401)
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCEECCCCCCCHHHHHHCC
T ss_conf 449995378987533666899999999998799189996444024279888888875304
No 96
>COG5654 Uncharacterized conserved protein [Function unknown]
Probab=39.03 E-value=14 Score=17.73 Aligned_cols=14 Identities=29% Similarity=0.762 Sum_probs=11.3
Q ss_pred EEECCCCCCCCHHHHH
Q ss_conf 9965899878489999
Q gi|254780181|r 5 AVYTGSFDPITNGHMD 20 (182)
Q Consensus 5 gifgGsFdPiH~GHL~ 20 (182)
.+|||+||| .||-.
T Consensus 32 ~i~GGRWNp--kG~pa 45 (163)
T COG5654 32 AIFGGRWNP--KGVPA 45 (163)
T ss_pred EECCCCCCC--CCCCE
T ss_conf 351653688--88706
No 97
>cd00817 ValRS_core This is the catalytic core domain of valine amino-acyl tRNA synthetases (ValRS) . This enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=38.74 E-value=19 Score=16.87 Aligned_cols=30 Identities=13% Similarity=0.145 Sum_probs=16.8
Q ss_pred CCCCHHHHH--HHHHH----HHH-CCEEEEECCCCCC
Q ss_conf 878489999--99999----974-8979996455888
Q gi|254780181|r 12 DPITNGHMD--IIIQA----LSF-VEDLVIAIGCNSV 41 (182)
Q Consensus 12 dPiH~GHL~--ia~~a----~~~-~D~vii~~~~~p~ 41 (182)
.|+|.||+. ++-.+ ..+ -..|++++|..-|
T Consensus 14 G~~HiGHa~~~i~aDv~aRy~rm~G~~V~f~~G~DeH 50 (363)
T cd00817 14 GSLHIGHALTNTIQDIIARYKRMKGYNVLWPPGTDHA 50 (363)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 8613527898999999999998169977887845756
No 98
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=38.39 E-value=17 Score=17.07 Aligned_cols=31 Identities=26% Similarity=0.158 Sum_probs=18.9
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEEC
Q ss_conf 965999658998784899999999997489799964
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAI 36 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~ 36 (182)
||||+|+||-- .| -++|.-+.+...+|.++.
T Consensus 1 MmkI~ViGaGa----wG-tAlA~~la~n~~~V~lw~ 31 (325)
T PRK00094 1 MMKIAVLGAGS----WG-TALAILLARNGHDVVLWG 31 (325)
T ss_pred CCEEEEECCCH----HH-HHHHHHHHHCCCEEEEEE
T ss_conf 98899989899----99-999999997899789998
No 99
>pfam11868 DUF3388 Protein of unknown function (DUF3388). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 261 to 275 amino acids in length. This protein is found associated with pfam01842.
Probab=37.33 E-value=11 Score=18.23 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=13.0
Q ss_pred CCCCCCCCHHHHHHHHHCC
Q ss_conf 8572113269999999859
Q gi|254780181|r 127 KESSRYVTSTLIRHLISID 145 (182)
Q Consensus 127 ~~~~~~ISST~IR~~i~~g 145 (182)
...|..+|||.||+-+++-
T Consensus 79 nKrW~f~SSTlikQTvRs~ 97 (192)
T pfam11868 79 NKRWLFLSSTLIKQTVRSQ 97 (192)
T ss_pred CCEEEEEEHHHHHHHHHHH
T ss_conf 6626763078999999988
No 100
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=37.07 E-value=19 Score=16.84 Aligned_cols=10 Identities=30% Similarity=0.461 Sum_probs=9.4
Q ss_pred CCEEEEECCC
Q ss_conf 9659996589
Q gi|254780181|r 1 MMRKAVYTGS 10 (182)
Q Consensus 1 MmkigifgGs 10 (182)
|||+||.|+|
T Consensus 1 m~kVaIvGAt 10 (345)
T PRK00436 1 MIKVAIVGAS 10 (345)
T ss_pred CCEEEEECCC
T ss_conf 9199998966
No 101
>PRK12359 flavodoxin FldB; Provisional
Probab=36.89 E-value=16 Score=17.32 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=15.5
Q ss_pred CEEEEECCCCCCCCHHHHH-HHHHHHHHC
Q ss_conf 6599965899878489999-999999748
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMD-IIIQALSFV 29 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~-ia~~a~~~~ 29 (182)
||||||-|| ..|+-. +|+...+.+
T Consensus 1 MKIgifYGS----~TGnTe~vA~~I~~~l 25 (169)
T PRK12359 1 MKIGLFYGS----STCYTEMAAEKIRDII 25 (169)
T ss_pred CEEEEEEEC----CCCHHHHHHHHHHHHH
T ss_conf 969999979----9970999999999985
No 102
>COG1544 Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]
Probab=35.13 E-value=18 Score=16.92 Aligned_cols=19 Identities=11% Similarity=0.454 Sum_probs=7.0
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999986545
Q gi|254780181|r 152 VPDPVCVFLKNIVISLVKY 170 (182)
Q Consensus 152 VP~~V~~yIk~~~~~~~k~ 170 (182)
|+++.-+|+.+++.+++++
T Consensus 12 it~a~r~yVe~Kl~kl~r~ 30 (110)
T COG1544 12 ITEAIREYVEEKLAKLERY 30 (110)
T ss_pred ECHHHHHHHHHHHHHHHHH
T ss_conf 0889999999999987765
No 103
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=34.66 E-value=36 Score=15.22 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=15.2
Q ss_pred CCCHHHHHHHHHHHHH--CC-EEEEECC
Q ss_conf 7848999999999974--89-7999645
Q gi|254780181|r 13 PITNGHMDIIIQALSF--VE-DLVIAIG 37 (182)
Q Consensus 13 PiH~GHL~ia~~a~~~--~D-~vii~~~ 37 (182)
|+|+||+..+.....+ .+ +++|..+
T Consensus 42 ~lHLGh~v~~~k~~~lQd~g~~~~~~Ia 69 (333)
T PRK08560 42 FIHLGHLVTMNKLADLQKAGFKVTVLLA 69 (333)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 4538999999999999977991899961
No 104
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=32.02 E-value=40 Score=14.95 Aligned_cols=30 Identities=13% Similarity=0.294 Sum_probs=18.6
Q ss_pred CCCCHHHHH--HHH-----HHHH-HCCEEEEECCCCCC
Q ss_conf 878489999--999-----9997-48979996455888
Q gi|254780181|r 12 DPITNGHMD--III-----QALS-FVEDLVIAIGCNSV 41 (182)
Q Consensus 12 dPiH~GHL~--ia~-----~a~~-~~D~vii~~~~~p~ 41 (182)
.++|.||+. .+. +.+. .-.+|++++|...+
T Consensus 16 G~lHiGH~~~~~l~aDi~aRy~R~~G~~v~~~~GtD~h 53 (558)
T PRK12268 16 GPLHLGHLAGSYLPADVYARYQRLKGNEVLFVSGSDEH 53 (558)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 98552311141989999999998379987975840647
No 105
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=30.77 E-value=23 Score=16.32 Aligned_cols=27 Identities=19% Similarity=0.148 Sum_probs=16.2
Q ss_pred CCHHHHHHHHHCCCCHHHCCCHHHHHHH
Q ss_conf 3269999999859995583999999999
Q gi|254780181|r 133 VTSTLIRHLISIDADITSFVPDPVCVFL 160 (182)
Q Consensus 133 ISST~IR~~i~~g~~i~~lVP~~V~~yI 160 (182)
+.+.--|+++.... +.-+||+.=.+-.
T Consensus 129 m~~~fY~~~l~~~g-ievvvPdd~~q~~ 155 (230)
T COG1794 129 MEQGFYRKRLEEKG-IEVVVPDDDEQAE 155 (230)
T ss_pred HHHHHHHHHHHHCC-CEEECCCHHHHHH
T ss_conf 77689999999779-6475677788999
No 106
>KOG0919 consensus
Probab=30.01 E-value=43 Score=14.75 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=17.3
Q ss_pred HHHHHHHHCCCCH-HHCCCHHHHH
Q ss_conf 9999999859995-5839999999
Q gi|254780181|r 136 TLIRHLISIDADI-TSFVPDPVCV 158 (182)
Q Consensus 136 T~IR~~i~~g~~i-~~lVP~~V~~ 158 (182)
++||+-+..+.|| ++|||+.|..
T Consensus 198 k~i~d~lE~~~d~s~ylvp~~vL~ 221 (338)
T KOG0919 198 KQIADILEENVDPSDYLVPDDVLT 221 (338)
T ss_pred HHHHHHHHHCCCHHHCCCCHHHHH
T ss_conf 999999872389988108788987
No 107
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=28.91 E-value=27 Score=15.99 Aligned_cols=25 Identities=20% Similarity=0.204 Sum_probs=19.4
Q ss_pred CCEEEEECCCCCCCCHHHH-HHHHHHHHHC
Q ss_conf 9659996589987848999-9999999748
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHM-DIIIQALSFV 29 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL-~ia~~a~~~~ 29 (182)
||||+|+-||+- |+- .+|+.+.+.+
T Consensus 1 M~ki~Ivy~S~t----GnTe~vA~~i~~~l 26 (151)
T COG0716 1 MMKILIVYGSRT----GNTEKVAEIIAEEL 26 (151)
T ss_pred CCEEEEEEECCC----CCHHHHHHHHHHHH
T ss_conf 975899998078----97999999999986
No 108
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=28.57 E-value=29 Score=15.73 Aligned_cols=17 Identities=12% Similarity=0.073 Sum_probs=11.1
Q ss_pred HHHCCCHHHHHHHHHHH
Q ss_conf 55839999999999999
Q gi|254780181|r 148 ITSFVPDPVCVFLKNIV 164 (182)
Q Consensus 148 i~~lVP~~V~~yIk~~~ 164 (182)
-+.+++-+|..-|++..
T Consensus 244 TS~laa~Svi~~l~~l~ 260 (265)
T PRK13303 244 TSALTALSAIRALRNRA 260 (265)
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 08999999999997212
No 109
>cd00806 TrpRS_core Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer, which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=27.98 E-value=46 Score=14.54 Aligned_cols=25 Identities=20% Similarity=0.090 Sum_probs=14.6
Q ss_pred CCCHHHHHHHHHHHH---HCCEEEEECC
Q ss_conf 784899999999997---4897999645
Q gi|254780181|r 13 PITNGHMDIIIQALS---FVEDLVIAIG 37 (182)
Q Consensus 13 PiH~GHL~ia~~a~~---~~D~vii~~~ 37 (182)
++|+||+.-+..... .--+++|..+
T Consensus 12 ~~HlG~~v~~~k~~~~~~~g~~~~i~ia 39 (282)
T cd00806 12 SLHLGHYLGAIRNWVLQQEGYELFFFIA 39 (282)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 1478889999999999978991999980
No 110
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=27.82 E-value=30 Score=15.69 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=15.8
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 965999658998784899999999997
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHMDIIIQALS 27 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL~ia~~a~~ 27 (182)
||+|||-|| +=-|-=.+++...+
T Consensus 2 m~~IgiTG~----igsGKStv~~~l~~ 24 (199)
T PRK00081 2 MLIIGLTGG----IGSGKSTVANIFAE 24 (199)
T ss_pred CEEEEEECC----CCCCHHHHHHHHHH
T ss_conf 789995788----87779999999998
No 111
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=26.88 E-value=28 Score=15.88 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=23.6
Q ss_pred CCEEEEECCCC-----CCCCHHHHH--HHHHH----HH-HCCEEEEECCCCCC
Q ss_conf 96599965899-----878489999--99999----97-48979996455888
Q gi|254780181|r 1 MMRKAVYTGSF-----DPITNGHMD--IIIQA----LS-FVEDLVIAIGCNSV 41 (182)
Q Consensus 1 MmkigifgGsF-----dPiH~GHL~--ia~~a----~~-~~D~vii~~~~~p~ 41 (182)
||+--+|--|= .|+|.||+. ++-.+ .. .-.+|+++++..-+
T Consensus 1 mm~k~~~iTt~ipY~Ng~~HiGHa~~~i~aDv~aRy~R~~G~~v~f~~GtDeh 53 (644)
T PRK12267 1 MMKKTFYITTPIYYPSGKLHIGHAYTTIAADVLARYKRLQGYDVFFLTGTDEH 53 (644)
T ss_pred CCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 99999899689988899855453487899999999998469975984876875
No 112
>PRK02271 methylenetetrahydromethanopterin reductase; Provisional
Probab=26.41 E-value=50 Score=14.37 Aligned_cols=33 Identities=18% Similarity=0.051 Sum_probs=15.6
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHH-CCEEEEE
Q ss_conf 659996589987848999999999974-8979996
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSF-VEDLVIA 35 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~-~D~vii~ 35 (182)
||+|+.-.+..|+.. .+++|+.|-+. ||.||+.
T Consensus 1 ~~~g~~~~~~~p~~~-~~~~a~~AE~~Gfd~vw~~ 34 (324)
T PRK02271 1 MKFGIEFVPNEPITK-IAYYVKLAEDNGFDYAWIT 34 (324)
T ss_pred CCEEEEECCCCCHHH-HHHHHHHHHHCCCCEEEEE
T ss_conf 930488389999999-9999999998599999964
No 113
>pfam09334 tRNA-synt_1g tRNA synthetases class I (M). This family includes methionyl tRNA synthetases.
Probab=26.19 E-value=50 Score=14.34 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=17.8
Q ss_pred CCCCHHHHH------HHHHHHH-HCCEEEEECCCCCC
Q ss_conf 878489999------9999997-48979996455888
Q gi|254780181|r 12 DPITNGHMD------IIIQALS-FVEDLVIAIGCNSV 41 (182)
Q Consensus 12 dPiH~GHL~------ia~~a~~-~~D~vii~~~~~p~ 41 (182)
.++|.||+. ++.+.++ .--+|+++++...+
T Consensus 12 G~lHiGHa~~~~~~Dvl~R~~r~~G~~V~~v~g~D~~ 48 (388)
T pfam09334 12 GPPHIGHLYTTIPADVYARYLRLRGYDVLFVTGTDEH 48 (388)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCC
T ss_conf 8600224188999999999999569970713864853
No 114
>PRK12443 uridylate kinase; Reviewed
Probab=26.09 E-value=50 Score=14.33 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=16.9
Q ss_pred CCCCCHHHHH-HHHHHHHHCCEEEEEC-CCCCCCC
Q ss_conf 9878489999-9999997489799964-5588876
Q gi|254780181|r 11 FDPITNGHMD-IIIQALSFVEDLVIAI-GCNSVKT 43 (182)
Q Consensus 11 FdPiH~GHL~-ia~~a~~~~D~vii~~-~~~p~k~ 43 (182)
|||--..++. -+..+.+.--+|.+++ ++|.+-.
T Consensus 24 ~d~~~l~~ia~eI~~~~~~G~evaiVvGGGNi~RG 58 (247)
T PRK12443 24 FNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRG 58 (247)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf 79999999999999999779879999768850232
No 115
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=25.61 E-value=36 Score=15.19 Aligned_cols=20 Identities=20% Similarity=0.170 Sum_probs=13.5
Q ss_pred CCEEEEECCCCCCCCHHHH--HHHHHHHH
Q ss_conf 9659996589987848999--99999997
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHM--DIIIQALS 27 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL--~ia~~a~~ 27 (182)
|||+||.| .|++ .+++...+
T Consensus 1 M~rVgiIG-------~GaIG~~Va~~l~~ 22 (265)
T PRK13304 1 MLKIGIVG-------CGAIANLITKAIDS 22 (265)
T ss_pred CCEEEEEC-------CCHHHHHHHHHHHC
T ss_conf 94999986-------57899999999867
No 116
>TIGR00233 trpS tryptophanyl-tRNA synthetase; InterPro: IPR002306 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Tryptophanyl-tRNA synthetase (6.1.1.2 from EC) is an alpha2 dimer that belongs to class Ib. The crystal structure of tryptophanyl-tRNA synthetase is known .; GO: 0000166 nucleotide binding, 0004830 tryptophan-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006436 tryptophanyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=25.56 E-value=51 Score=14.31 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHHH--HHH--HCC-EEEEECCC
Q ss_conf 8784899999999--997--489-79996455
Q gi|254780181|r 12 DPITNGHMDIIIQ--ALS--FVE-DLVIAIGC 38 (182)
Q Consensus 12 dPiH~GHL~ia~~--a~~--~~D-~vii~~~~ 38 (182)
|.+|+||..-+.+ ... +.+ +++|.++.
T Consensus 14 d~~HlGnylg~~~~~~~~~~q~~~~~~~~~aD 45 (366)
T TIGR00233 14 DKMHLGNYLGAIRLKVLQEEQEGYELFFCIAD 45 (366)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 76443300667888877743168976899737
No 117
>pfam00579 tRNA-synt_1b tRNA synthetases class I (W and Y).
Probab=25.21 E-value=52 Score=14.23 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHHH---HCCEEEEECCC
Q ss_conf 784899999999997---48979996455
Q gi|254780181|r 13 PITNGHMDIIIQALS---FVEDLVIAIGC 38 (182)
Q Consensus 13 PiH~GHL~ia~~a~~---~~D~vii~~~~ 38 (182)
|+|.||+..+..+.. ...++++..+.
T Consensus 17 ~lHlGhl~~~~~~~~lq~~g~~~~~liad 45 (291)
T pfam00579 17 PLHLGYLVPLMKLVQFQQAGHEVFFLIGD 45 (291)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 30779899999999999789909999738
No 118
>cd00668 Ile_Leu_Val_MetRS_core This is the catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=24.77 E-value=53 Score=14.18 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=16.7
Q ss_pred CCCCHHHHH------HHHHHHHH-CCEEEEECCCC
Q ss_conf 878489999------99999974-89799964558
Q gi|254780181|r 12 DPITNGHMD------IIIQALSF-VEDLVIAIGCN 39 (182)
Q Consensus 12 dPiH~GHL~------ia~~a~~~-~D~vii~~~~~ 39 (182)
.|+|.||+. ++.+.++. --+|.++.+..
T Consensus 13 G~LHiGHar~~~~~Dv~~R~~r~~G~~V~~v~g~D 47 (334)
T cd00668 13 GVLHLGHALTYTLKDIIARYKRMRGYNVLFPPGWD 47 (334)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC
T ss_conf 86146675989999999999981699536068668
No 119
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=24.36 E-value=54 Score=14.14 Aligned_cols=34 Identities=12% Similarity=0.260 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCCCCHHHH--HHHHHHHHHCCEEE-EECCCCCC
Q ss_conf 9659996589987848999--99999997489799-96455888
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHM--DIIIQALSFVEDLV-IAIGCNSV 41 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL--~ia~~a~~~~D~vi-i~~~~~p~ 41 (182)
||.|||.|| |-| +++..+..+--+++ +-|..+.+
T Consensus 1 ~~tvgIlGG-------GQLgrMm~~aa~~lG~~v~vLdp~~~~P 37 (375)
T COG0026 1 MKTVGILGG-------GQLGRMMALAAARLGIKVIVLDPDADAP 37 (375)
T ss_pred CCEEEEECC-------CHHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 976999768-------6999999999986497799956999996
No 120
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase; InterPro: IPR005914 Isoprenoids are a large class of compounds, with more than 20,000 structures currently known, which are found in all living organisms. Some play essential physiological roles, such as sterols that stabilise cell membranes or carotenoids involved in photosynthesis, while the function of many others is not well understood. In all eukaryotes and some prokaryotes, isoprenoids are synthesised by the mevalonate pathway, while most prokaryotes use a mevalonate-independent pathway , . This entry represents acetoacetyl-CoA synthase (6.2.1.16 from EC), catalysing the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. ATP + acetoacetate + CoA = AMP + diphosphate + acetoacetyl-CoA A Sinorhizobium protein in this entry is also required for growth on polyhydroxybutyrate, a commonly used carbon storage molecule in bacteria ..
Probab=24.04 E-value=43 Score=14.74 Aligned_cols=58 Identities=21% Similarity=0.288 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHHHC------CCCCEEEEECC----CCCCCCCHHHHHHHHHCCCCHHHCCCHHHHH
Q ss_conf 20124677998987647------99868997068----5721132699999998599955839999999
Q gi|254780181|r 100 TDFDYEMRMTSVNRCLC------PEIATIALFAK----ESSRYVTSTLIRHLISIDADITSFVPDPVCV 158 (182)
Q Consensus 100 ~~~~~~~~~~~~~~~l~------~~~~~i~l~~~----~~~~~ISST~IR~~i~~g~~i~~lVP~~V~~ 158 (182)
..++..++...+.+.|- .....+.||.+ ..+.+-=-..||++|+.|.|-++ ||..|.+
T Consensus 557 eIYn~VE~~dEv~esLcig~~~~DG~~rvvLFv~lA~G~tl~~aL~~~Ik~~IR~glSpRH-VP~~iie 624 (676)
T TIGR01217 557 EIYNAVERLDEVEESLCIGQEQEDGDVRVVLFVKLASGATLDDALVKRIKDAIRAGLSPRH-VPDKIIE 624 (676)
T ss_pred HHHHHHHCCCCHHHHHCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCC-CCHHHHC
T ss_conf 8988852372013430137516788875047788068986588999999999742788766-7345501
No 121
>cd00671 ArgRS_core This is the catalytic core domain of Arginyl tRNA synthetase (ArgRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The other subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=22.54 E-value=54 Score=14.13 Aligned_cols=16 Identities=38% Similarity=0.634 Sum_probs=9.9
Q ss_pred CCCCCHHHHH--HHHHHH
Q ss_conf 9878489999--999999
Q gi|254780181|r 11 FDPITNGHMD--IIIQAL 26 (182)
Q Consensus 11 FdPiH~GHL~--ia~~a~ 26 (182)
.-|+|.||+. ++-.++
T Consensus 12 ~kplHvGHlR~aiiGdsl 29 (267)
T cd00671 12 TGPLHVGHLRNAIIGDSL 29 (267)
T ss_pred CCCCCHHHHHHHHHHHHH
T ss_conf 998503103638999999
No 122
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.15 E-value=47 Score=14.50 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHCCCCCC
Q ss_conf 998654577651888767
Q gi|254780181|r 164 VISLVKYDSIKLFPNTIF 181 (182)
Q Consensus 164 ~~~~~k~~~~~~~~~~~~ 181 (182)
-..-.|+...+.+|++-|
T Consensus 424 gi~Avry~~l~~~~~~~~ 441 (577)
T COG0018 424 GIDAVRYADLSRSRDKDY 441 (577)
T ss_pred HHHHHHHHHHHCCCCCCC
T ss_conf 240678998862899994
No 123
>pfam11909 NdhN NADH-quinone oxidoreductase cyanobacterial subunit N. The proton-pumping NADH:ubiquinone oxidoreductase catalyzes the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. It is the largest, most complex and least understood of the respiratory chain enzymes and is referred to as Complex I. The subunit composition of the enzyme varies between groups of organisms. Complex I originating from mammalian mitochondria contains 45 different proteins, whereas in bacteria, the corresponding complex NDH-1 consists of 14 different polypeptides. Homologues of these 14 proteins are found among subunits of the mitochondrial complex I, and therefore bacterial NDH-1 might be considered a model proton-pumping NADH dehydrogenase with a minimal set of subunits. Escherichia coli NDH-1 readily disintegrates into 3 subcomplexes: a water-soluble NADH dehydrogenase fragment (NuoE, -F, and -G),the connecting fragment (NuoB, -C, -D, and -I), and the membra
Probab=22.03 E-value=15 Score=17.46 Aligned_cols=14 Identities=29% Similarity=0.199 Sum_probs=7.5
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 87848999999999
Q gi|254780181|r 12 DPITNGHMDIIIQA 25 (182)
Q Consensus 12 dPiH~GHL~ia~~a 25 (182)
-|+|+||-.+.+.+
T Consensus 67 RPpHLGk~~igr~~ 80 (154)
T pfam11909 67 RPPHLGKQSIGRNA 80 (154)
T ss_pred CCCCCCCCCCCCCC
T ss_conf 99877864345676
No 124
>pfam00750 tRNA-synt_1d tRNA synthetases class I (R). Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only arginyl tRNA synthetase.
Probab=21.92 E-value=56 Score=14.05 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999998654577651888767
Q gi|254780181|r 161 KNIVISLVKYDSIKLFPNTIF 181 (182)
Q Consensus 161 k~~~~~~~k~~~~~~~~~~~~ 181 (182)
+..-..-.|+...+..|++-+
T Consensus 321 ~~Vgi~Airy~~L~~~~~k~i 341 (345)
T pfam00750 321 TAIGVDAARYADLSSNRDTDY 341 (345)
T ss_pred HHHHHHHHHHHHHHCCCCCCC
T ss_conf 877076765999865889898
No 125
>pfam01406 tRNA-synt_1e tRNA synthetases class I (C) catalytic domain. This family includes only cysteinyl tRNA synthetases.
Probab=21.73 E-value=61 Score=13.82 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=20.3
Q ss_pred CCCCCHHHHH------HHHHHHHH-CCEEEEECCCCCC
Q ss_conf 9878489999------99999974-8979996455888
Q gi|254780181|r 11 FDPITNGHMD------IIIQALSF-VEDLVIAIGCNSV 41 (182)
Q Consensus 11 FdPiH~GHL~------ia~~a~~~-~D~vii~~~~~p~ 41 (182)
.|.+|.||.. ++.+.++. --+|.++.+..-+
T Consensus 20 Y~~pHIGHa~t~I~~Dvi~R~~r~~G~~V~fv~g~ddh 57 (301)
T pfam01406 20 YDDSHIGHARSAVAFDVLRRYLQALGYDVQFVQNFTDI 57 (301)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 89975223368999999999999749946999677863
No 126
>PRK03333 coaE dephospho-CoA kinase/unknown domain fusion protein; Provisional
Probab=20.88 E-value=48 Score=14.48 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=12.8
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 96599965899878489999999999
Q gi|254780181|r 1 MMRKAVYTGSFDPITNGHMDIIIQAL 26 (182)
Q Consensus 1 MmkigifgGsFdPiH~GHL~ia~~a~ 26 (182)
|++|||-|| |=-|--.++....
T Consensus 1 M~~IGLTGG----IgsGKStv~~~l~ 22 (394)
T PRK03333 1 MLRIGLTGG----IGAGKSTVSATLA 22 (394)
T ss_pred CEEEEEECC----CCCCHHHHHHHHH
T ss_conf 949983067----5557999999999
No 127
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=20.59 E-value=65 Score=13.68 Aligned_cols=46 Identities=22% Similarity=0.200 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHHH--HHCC-EEEEECCCCCCCCCCCCCHHHHHHH-HH
Q ss_conf 878489999999999--7489-7999645588876657898999999-99
Q gi|254780181|r 12 DPITNGHMDIIIQAL--SFVE-DLVIAIGCNSVKTKGFLSIQERSEL-IK 57 (182)
Q Consensus 12 dPiH~GHL~ia~~a~--~~~D-~vii~~~~~p~k~~~~~s~e~r~~m-~~ 57 (182)
-++|+||+.....+. +.|+ .|+|..+..----....+.++.+++ ++
T Consensus 77 g~mHlGH~ipf~~~k~lQ~fg~~l~I~iaDdEkfl~r~~t~ee~~~~a~e 126 (369)
T PRK12285 77 GKMHIGHKMVFDQLKWFQEFGADVYIQIADLEAYSARGMSLEETREIAIE 126 (369)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCCHHHHHHHHHH
T ss_conf 87552015099999999987996899935579987279989999999999
No 128
>cd00814 MetRS_core This is the catalytic core domain of methionine tRNA synthetase (MetRS). This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and a anti-codon binding domain functions as a monomer. However, in some species, the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion that IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=20.20 E-value=66 Score=13.63 Aligned_cols=31 Identities=13% Similarity=0.163 Sum_probs=19.0
Q ss_pred CCCCCCHHHHH------HHHHHHHH-CCEEEEECCCCC
Q ss_conf 99878489999------99999974-897999645588
Q gi|254780181|r 10 SFDPITNGHMD------IIIQALSF-VEDLVIAIGCNS 40 (182)
Q Consensus 10 sFdPiH~GHL~------ia~~a~~~-~D~vii~~~~~p 40 (182)
.-+++|.||+. ++.+.++. --+|.++++...
T Consensus 11 v~g~lHiGHar~~v~~Dil~R~lr~~G~~V~~vt~~Dd 48 (319)
T cd00814 11 VNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDE 48 (319)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 88985533068899999999999965995699687778
No 129
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=20.03 E-value=60 Score=13.86 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=6.9
Q ss_pred CCCCCCCHHHHHHHH
Q ss_conf 899878489999999
Q gi|254780181|r 9 GSFDPITNGHMDIII 23 (182)
Q Consensus 9 GsFdPiH~GHL~ia~ 23 (182)
++.=|+.--|-++-+
T Consensus 139 ~~IiPvDSEH~Aifq 153 (379)
T PRK05447 139 AQILPVDSEHSAIFQ 153 (379)
T ss_pred CEEEECCHHHHHHHH
T ss_conf 868643608899999
Done!