HHsearch alignment for GI: 254780181 and conserved domain: pfam01467

>pfam01467 CTP_transf_2 Cytidylyltransferase. This family includes: Cholinephosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase.
Probab=99.85  E-value=9.6e-22  Score=149.70  Aligned_cols=122  Identities=18%  Similarity=0.172  Sum_probs=84.0

Q ss_pred             EECCCCCCCCHHHHHHHHHHHHHC--CEEEEECCCCC-CCCC-CCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCC
Q ss_conf             965899878489999999999748--97999645588-8766-5789899999999976420133554412420333332
Q gi|254780181|r    6 VYTGSFDPITNGHMDIIIQALSFV--EDLVIAIGCNS-VKTK-GFLSIQERSELIKQSIFHFIPDSSNRVSVISFEGLAV   81 (182)
Q Consensus         6 ifgGsFdPiH~GHL~ia~~a~~~~--D~vii~~~~~p-~k~~-~~~s~e~r~~m~~~a~~~~~~~~~~~~~~~~~~~~~~   81 (182)
T Consensus         1 i~gGsFdP~H~GHl~i~~~a~~~~~~d~v~~ip~~~~p~k~~~~~~~~~~R~~ml~~a~~~~~~~~v~~~e---------   71 (148)
T pfam01467         1 LFGGTFDPIHLGHLRLLEQAKELFDLDKIVGVPSDESPHKDTKNLFSAEERLEMLELALEVDPNLEVDDFE---------   71 (148)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECH---------
T ss_conf             97725798879999999999997699879999767656667888899999999999998239976997330---------


Q ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC----------------------CCCCEEEEECCCCCCCCCHHHHH
Q ss_conf             21001497079994376520124677998987647----------------------99868997068572113269999
Q gi|254780181|r   82 NLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLC----------------------PEIATIALFAKESSRYVTSTLIR  139 (182)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------------------~~~~~i~l~~~~~~~~ISST~IR  139 (182)
T Consensus        72 -----~~~~~~i~G~D~~~~~~~W~~~~~i~~~~~~~v~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ISST~IR  146 (148)
T pfam01467        72 -----DLDVYFIIGADALVNLRGWRGVTELLPEFQIVVVNRPLDYGLETVFLREELDKYPLGKIVIPDLPYNDISSTEIR  146 (148)
T ss_pred             -----HHHHHHHHCCCHHHHCCCCCCHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHC
T ss_conf             -----267899984990554488787999995077899828999750123413344323577379787875764828862


Q ss_pred             HH
Q ss_conf             99
Q gi|254780181|r  140 HL  141 (182)
Q Consensus       140 ~~  141 (182)
T Consensus       147 ~r  148 (148)
T pfam01467       147 ER  148 (148)
T ss_pred             CC
T ss_conf             97