HHsearch alignment for GI: 254780181 and conserved domain: pfam08218

>pfam08218 Citrate_ly_lig Citrate lyase ligase C-terminal domain. This family is composed of the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=99.12  E-value=1.2e-09  Score=77.53  Aligned_cols=144  Identities=15%  Similarity=0.208  Sum_probs=83.2

Q ss_pred             CCCCCHHHHHHHHHHHHHCCEEE-EECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEE-----ECCCCCCCCCC
Q ss_conf             98784899999999997489799-9645588876657898999999999764201335544124-----20333332210
Q gi|254780181|r   11 FDPITNGHMDIIIQALSFVEDLV-IAIGCNSVKTKGFLSIQERSELIKQSIFHFIPDSSNRVSV-----ISFEGLAVNLA   84 (182)
Q Consensus        11 FdPiH~GHL~ia~~a~~~~D~vi-i~~~~~p~k~~~~~s~e~r~~m~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~   84 (182)
T Consensus         8 aNPFT~GH~yLvE~Aa~~~d~l~vFVV~e----D~S~F~~~~R~~LV~~G~~~l~NV~v~~g~~YiIS~aTFP~YFlKd~   83 (182)
T pfam08218         8 ANPFTLGHRYLVEQAAAENDWVHLFVVSE----DASLFSYEERFALVKQGTKDLDNVTVHSGGDYIISRATFPSYFIKEQ   83 (182)
T ss_pred             CCCCCCHHHHHHHHHHHHCCEEEEEEEEC----CCCCCCHHHHHHHHHHHHCCCCCEEEECCCCEEEEEECCCHHHHCCH
T ss_conf             79885368999999997499899999835----56738899999999997555888699559987897104715553556


Q ss_pred             --------------------CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC-CCEEEEECCCC--CCCCCHHHHHHH
Q ss_conf             --------------------0149707999437652012467799898764799-86899706857--211326999999
Q gi|254780181|r   85 --------------------KDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPE-IATIALFAKES--SRYVTSTLIRHL  141 (182)
Q Consensus        85 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~i~l~~~~~--~~~ISST~IR~~  141 (182)
T Consensus        84 ~~v~~~~~~lD~~iF~~~IApaL~It~RfVG~EP~~~vT~-~YN~~m~~~Lp~~~I~v~~i-~R~~~~~~~ISAS~VR~~  161 (182)
T pfam08218        84 DVVIKSQTTIDLRIFREYIAPALGITHRYVGEEPFSRVTA-IYNQAMQSELPPAGIEVVEI-PRKEYDGGPISASTVRQA  161 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHH-HHHHHHHHHCCCCCCEEEEE-CCCCCCCCEECHHHHHHH
T ss_conf             8999999999899999962265287633405898987799-99999998668469479995-254569968709999999


Q ss_pred             HHCCC--CHHHCCCHHHHHHH
Q ss_conf             98599--95583999999999
Q gi|254780181|r  142 ISIDA--DITSFVPDPVCVFL  160 (182)
Q Consensus       142 i~~g~--~i~~lVP~~V~~yI  160 (182)
T Consensus       162 l~~~~~~~i~~lVP~tT~~~L  182 (182)
T pfam08218       162 IKEGNLEALAKLVPATTLQYL  182 (182)
T ss_pred             HHCCCHHHHHHHCCHHHHHHC
T ss_conf             985999999873887557439