RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780181|ref|YP_003064594.1| phosphopantetheine adenylyltransferase [Candidatus Liberibacter asiaticus str. psy62] (182 letters) >gnl|CDD|178911 PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional. Length = 159 Score = 190 bits (485), Expect = 2e-49 Identities = 66/161 (40%), Positives = 103/161 (63%), Gaps = 6/161 (3%) Query: 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIF 61 M+ A+Y GSFDPITNGH+DII +A +++++A+ N K K S++ER ELI+++ Sbjct: 1 MKIAIYPGSFDPITNGHLDIIERASRLFDEVIVAVAINPSK-KPLFSLEERVELIREATA 59 Query: 62 HFIPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIAT 121 H V V+SF+GL V+ A+++ A VIVRGLR ++DF+YE +M +NR L PEI T Sbjct: 60 HL-----PNVEVVSFDGLLVDFAREVGATVIVRGLRAVSDFEYEFQMAGMNRKLAPEIET 114 Query: 122 IALFAKESSRYVTSTLIRHLISIDADITSFVPDPVCVFLKN 162 + L +++S+L++ + + D++ FVP V LK Sbjct: 115 VFLMPSPEYSFISSSLVKEVARLGGDVSGFVPPAVAKALKE 155 >gnl|CDD|162396 TIGR01510, coaD_prev_kdtB, pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis. Length = 155 Score = 152 bits (385), Expect = 7e-38 Identities = 66/158 (41%), Positives = 99/158 (62%), Gaps = 6/158 (3%) Query: 4 KAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHF 63 A+Y GSFDP+TNGH+DII +A + +++++A+ N K K S++ER ELIK + H Sbjct: 1 IALYPGSFDPVTNGHLDIIKRAAALFDEVIVAVAKNPSK-KPLFSLEERVELIKDATKHL 59 Query: 64 IPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIA 123 V V F+GL V+ AK++ A IVRGLR TDF+YE++M +N+ L PEI T+ Sbjct: 60 -----PNVRVDVFDGLLVDYAKELGATFIVRGLRAATDFEYELQMALMNKHLAPEIETVF 114 Query: 124 LFAKESSRYVTSTLIRHLISIDADITSFVPDPVCVFLK 161 L A +V+S+L++ + S D+++ VP V LK Sbjct: 115 LMASPEYAFVSSSLVKEIASFGGDVSNLVPPAVARRLK 152 >gnl|CDD|184424 PRK13964, coaD, phosphopantetheine adenylyltransferase; Provisional. Length = 140 Score = 87.1 bits (216), Expect = 3e-18 Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 7/140 (5%) Query: 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIF 61 M+ A+Y GSFDP GH++I+ +AL + + + + N K+ + R + +K + Sbjct: 1 MKIAIYPGSFDPFHKGHLNILKKALKLFDKVYVVVSINPDKSNA-SDLDSRFKNVKNKLK 59 Query: 62 HFIPDSSNRVSVISFE-GLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIA 120 F V V+ E L +AK + A ++R R+ DF YE+ + + N+ L ++ Sbjct: 60 DF-----KNVEVLINENKLTAEIAKKLGANFLIRSARNNIDFQYEIVLAAGNKSLNNDLE 114 Query: 121 TIALFAKESSRYVTSTLIRH 140 TI + +STL+RH Sbjct: 115 TILIIPDYDKIEYSSTLLRH 134 >gnl|CDD|161722 TIGR00125, cyt_tran_rel, cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Length = 66 Score = 50.8 bits (122), Expect = 2e-07 Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 4/63 (6%) Query: 4 KAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIG----CNSVKTKGFLSIQERSELIKQS 59 + ++ G+FDP GH+D++ +A ++L++ +G N +K + S++ER E++K Sbjct: 1 RVIFVGTFDPFHLGHLDLLERAKELFDELIVGVGSDQFVNPLKGEPVFSLEERLEMLKAL 60 Query: 60 IFH 62 + Sbjct: 61 KYV 63 >gnl|CDD|178839 PRK00071, nadD, nicotinic acid mononucleotide adenylyltransferase; Provisional. Length = 203 Score = 39.8 bits (94), Expect = 4e-04 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 4/64 (6%) Query: 1 MMRKAVYTGSFDPITNGHMDIIIQALSFVE-DLVIAI--GCNSVKT-KGFLSIQERSELI 56 M R ++ G+FDP GH+ I +A + D V + K K ++ R ++ Sbjct: 3 MKRIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGPPHKPQKPLAPLEHRLAML 62 Query: 57 KQSI 60 + +I Sbjct: 63 ELAI 66 Score = 26.0 bits (58), Expect = 6.2 Identities = 8/22 (36%), Positives = 10/22 (45%) Query: 135 STLIRHLISIDADITSFVPDPV 156 ST IR I I +P+ V Sbjct: 170 STAIRERIKEGRPIRYLLPEAV 191 >gnl|CDD|162401 TIGR01527, arch_NMN_Atrans, nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs. Length = 165 Score = 37.9 bits (88), Expect = 0.001 Identities = 39/164 (23%), Positives = 60/164 (36%), Gaps = 14/164 (8%) Query: 4 KAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGC--NSVKTKGFLSIQERSELIKQSIF 61 + Y G F P GH+++I + V++L+I IG S + + ER +I QS+ Sbjct: 1 RGFYIGRFQPFHLGHLEVIKKIAEEVDELIIGIGSAQESHTLENPFTAGERILMITQSLK 60 Query: 62 HFIPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRDMT-DFDYEMRMTSVNRCLCPEIA 120 +I E + N + V + MT FD + R L E Sbjct: 61 EV---GDLTYYIIPIEDIERN-------SIWVSYVESMTPPFDVVYSNNPLVRRLFKEAG 110 Query: 121 TIALFAKESSRYV-TSTLIRHLISIDADITSFVPDPVCVFLKNI 163 +R + T IR + D VP V +K I Sbjct: 111 YEVKRPPMFNRKEYSGTEIRRRMLNGEDWEHLVPKAVADVIKEI 154 >gnl|CDD|179235 PRK01153, PRK01153, nicotinamide-nucleotide adenylyltransferase; Provisional. Length = 174 Score = 37.2 bits (87), Expect = 0.002 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%) Query: 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIG 37 MR A++ G F P GH+++I L V++L+I IG Sbjct: 1 MR-ALFIGRFQPFHKGHLEVIKWILEEVDELIIGIG 35 >gnl|CDD|180046 PRK05379, PRK05379, bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional. Length = 340 Score = 36.9 bits (86), Expect = 0.003 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 25/96 (26%) Query: 5 AVYTGSFDPITNGHMDIIIQALSFVEDLVIAIG-CNSVK-TKGFLSIQERSELIKQSIFH 62 V+ G F P NGH+ +I +ALS + +++ IG + + K S +ER+++I+ + Sbjct: 9 LVFIGRFQPFHNGHLAVIREALSRAKKVIVLIGSADLARSIKNPFSFEERAQMIRAA--- 65 Query: 63 FIPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRD 98 LA A+V +R LRD Sbjct: 66 --------------------LAGIDLARVTIRPLRD 81 >gnl|CDD|161899 TIGR00482, TIGR00482, nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species. Length = 193 Score = 35.0 bits (81), Expect = 0.012 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%) Query: 6 VYTGSFDPITNGHMDIIIQALS-FVEDLVIAI-GCNSV--KTKGFLSIQERSELIKQSI 60 ++ GSFDPI GH+ + +AL D VI + N KT S R ++K +I Sbjct: 1 LFGGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANPPHKKTYEAASSHHRLAMLKLAI 59 Score = 27.7 bits (62), Expect = 1.9 Identities = 10/25 (40%), Positives = 13/25 (52%) Query: 133 VTSTLIRHLISIDADITSFVPDPVC 157 ++ST IR I I +PDPV Sbjct: 160 ISSTEIRQRIRQGKSIEYLLPDPVI 184 >gnl|CDD|180860 PRK07152, nadD, putative nicotinate-nucleotide adenylyltransferase; Validated. Length = 342 Score = 33.4 bits (77), Expect = 0.039 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 4/63 (6%) Query: 2 MRKAVYTGSFDPITNGHMDIIIQALSFVE-DLVIAIGC--NSVKTKGFLSIQE-RSELIK 57 M+ A++ GSFDPI GH++I +A+ ++ D + + N K K S E R ++K Sbjct: 1 MKIAIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYINPFKKKQKASNGEHRLNMLK 60 Query: 58 QSI 60 ++ Sbjct: 61 LAL 63 >gnl|CDD|181229 PRK08099, PRK08099, bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional. Length = 399 Score = 31.2 bits (71), Expect = 0.16 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Query: 1 MMRK-AVYTGSFDPITNGHMDIIIQALSFVEDLVIAIG 37 M+K V G F P+ GH+ +I +A S V++L I I Sbjct: 50 QMKKIGVVFGKFYPLHTGHIYLIQRACSQVDELHIIIC 87 >gnl|CDD|179121 PRK00777, PRK00777, phosphopantetheine adenylyltransferase; Provisional. Length = 153 Score = 29.0 bits (66), Expect = 0.74 Identities = 10/35 (28%), Positives = 19/35 (54%) Query: 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAI 36 M K G+FDP+ +GH ++ +A + + I + Sbjct: 1 MMKVAVGGTFDPLHDGHRALLRKAFELGKRVTIGL 35 >gnl|CDD|162400 TIGR01526, nadR_NMN_Atrans, nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity. Length = 325 Score = 28.7 bits (64), Expect = 0.86 Identities = 13/36 (36%), Positives = 20/36 (55%) Query: 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIG 37 V G F P+ GH+ +I +A S V++L I +G Sbjct: 1 KTIGVVFGKFYPLHTGHIYLIYEAFSKVDELHIVVG 36 >gnl|CDD|183910 PRK13238, tnaA, tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional. Length = 460 Score = 27.5 bits (62), Expect = 2.2 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 11/41 (26%) Query: 70 RVSVISFEG------LAVNLAKDISAQVIVRGLRDMTDFDY 104 R I +EG LA +D+ A + GL + D DY Sbjct: 282 RTLCILYEGFPTYGGLAG---RDMEA--LAVGLYEGMDEDY 317 >gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed. Length = 644 Score = 26.2 bits (57), Expect = 5.2 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 11/72 (15%) Query: 64 IPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIA 123 +PD R ++ V LA DI A +I RG + D L + A Sbjct: 321 LPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGAD-----------LANLVNEAA 369 Query: 124 LFAKESSRYVTS 135 LFA ++ V S Sbjct: 370 LFAARGNKRVVS 381 >gnl|CDD|129003 smart00764, Citrate_ly_lig, Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22. Length = 182 Score = 26.1 bits (58), Expect = 6.1 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 5/52 (9%) Query: 13 PITNGHMDIIIQALSFVEDLVIAIGCNSVKT-KGFLSIQERSELIKQSIFHF 63 P T GH ++ QA + + + + + V S ER L+K+ Sbjct: 10 PFTLGHRYLVEQAAAECDWVHLFV----VSEDASLFSFDERFALVKKGTKDL 57 >gnl|CDD|129230 TIGR00124, cit_ly_ligase, [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate. Length = 332 Score = 25.6 bits (56), Expect = 7.5 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 5/51 (9%) Query: 12 DPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFL-SIQERSELIKQSIF 61 +P TNGH +I QA + L + + VK L S ER L+KQ I Sbjct: 149 NPFTNGHRYLIEQAARQCDWLHLFV----VKEDASLFSYDERFALVKQGIQ 195 >gnl|CDD|181576 PRK08887, PRK08887, nicotinic acid mononucleotide adenylyltransferase; Provisional. Length = 174 Score = 25.5 bits (56), Expect = 9.2 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 20/80 (25%) Query: 1 MMRKAVYTGSFDPITNGHMDIIIQALSFVEDLVI-------AIGCNSVKTKGFLSIQERS 53 M + AV+ +F+P + GH +I F DLV+ A G K L + R Sbjct: 1 MKKIAVFGSAFNPPSLGHKSVIESLSHF--DLVLLVPSIAHAWG------KTMLDYETRC 52 Query: 54 ELIKQSIFHFIPD-SSNRVS 72 +L+ FI D + V Sbjct: 53 QLVDA----FIQDLGLSNVQ 68 >gnl|CDD|184329 PRK13793, PRK13793, nicotinamide-nucleotide adenylyltransferase; Provisional. Length = 196 Score = 25.3 bits (55), Expect = 9.4 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Query: 6 VYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVK---TKGFLSIQERSELI 56 V+ G F P HM I AL +++A+G ++ FL+I ER ++I Sbjct: 8 VFIGRFQPFHLAHMQTIEIALQQSRYVILALGSAQMERNIKNPFLAI-EREQMI 60 >gnl|CDD|140212 PTZ00185, PTZ00185, ATPase alpha subunit; Provisional. Length = 574 Score = 25.4 bits (55), Expect = 9.6 Identities = 12/57 (21%), Positives = 24/57 (42%) Query: 99 MTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISIDADITSFVPDP 155 M F + ++ R A + + S + + +I ++ SID I + +P P Sbjct: 1 MRRFVAQYVAPAMGRLASTAAAGKSAAPGQKSFFKATEMIGYVHSIDGTIATLIPAP 57 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.326 0.139 0.392 Gapped Lambda K H 0.267 0.0733 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 2,831,937 Number of extensions: 166078 Number of successful extensions: 415 Number of sequences better than 10.0: 1 Number of HSP's gapped: 410 Number of HSP's successfully gapped: 31 Length of query: 182 Length of database: 5,994,473 Length adjustment: 87 Effective length of query: 95 Effective length of database: 4,114,577 Effective search space: 390884815 Effective search space used: 390884815 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 54 (24.6 bits)