RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780181|ref|YP_003064594.1| phosphopantetheine
adenylyltransferase [Candidatus Liberibacter asiaticus str. psy62]
         (182 letters)



>gnl|CDD|178911 PRK00168, coaD, phosphopantetheine adenylyltransferase;
           Provisional.
          Length = 159

 Score =  190 bits (485), Expect = 2e-49
 Identities = 66/161 (40%), Positives = 103/161 (63%), Gaps = 6/161 (3%)

Query: 2   MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIF 61
           M+ A+Y GSFDPITNGH+DII +A    +++++A+  N  K K   S++ER ELI+++  
Sbjct: 1   MKIAIYPGSFDPITNGHLDIIERASRLFDEVIVAVAINPSK-KPLFSLEERVELIREATA 59

Query: 62  HFIPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIAT 121
           H        V V+SF+GL V+ A+++ A VIVRGLR ++DF+YE +M  +NR L PEI T
Sbjct: 60  HL-----PNVEVVSFDGLLVDFAREVGATVIVRGLRAVSDFEYEFQMAGMNRKLAPEIET 114

Query: 122 IALFAKESSRYVTSTLIRHLISIDADITSFVPDPVCVFLKN 162
           + L       +++S+L++ +  +  D++ FVP  V   LK 
Sbjct: 115 VFLMPSPEYSFISSSLVKEVARLGGDVSGFVPPAVAKALKE 155


>gnl|CDD|162396 TIGR01510, coaD_prev_kdtB, pantetheine-phosphate
           adenylyltransferase, bacterial.  This model describes
           pantetheine-phosphate adenylyltransferase, the
           penultimate enzyme of coenzyme A (CoA) biosynthesis in
           bacteria. It does not show any strong homology to
           eukaryotic enzymes of coenzyme A biosynthesis. This
           protein was previously designated KdtB and postulated
           (because of cytidyltransferase homology and proximity to
           kdtA) to be an enzyme of LPS biosynthesis, a
           cytidyltransferase for 3-deoxy-D-manno-2-octulosonic
           acid. However, no activity toward that compound was
           found with either CTP or ATP. The phylogenetic
           distribution of this enzyme is more consistent with
           coenzyme A biosynthesis than with LPS biosynthesis.
          Length = 155

 Score =  152 bits (385), Expect = 7e-38
 Identities = 66/158 (41%), Positives = 99/158 (62%), Gaps = 6/158 (3%)

Query: 4   KAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHF 63
            A+Y GSFDP+TNGH+DII +A +  +++++A+  N  K K   S++ER ELIK +  H 
Sbjct: 1   IALYPGSFDPVTNGHLDIIKRAAALFDEVIVAVAKNPSK-KPLFSLEERVELIKDATKHL 59

Query: 64  IPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIA 123
                  V V  F+GL V+ AK++ A  IVRGLR  TDF+YE++M  +N+ L PEI T+ 
Sbjct: 60  -----PNVRVDVFDGLLVDYAKELGATFIVRGLRAATDFEYELQMALMNKHLAPEIETVF 114

Query: 124 LFAKESSRYVTSTLIRHLISIDADITSFVPDPVCVFLK 161
           L A     +V+S+L++ + S   D+++ VP  V   LK
Sbjct: 115 LMASPEYAFVSSSLVKEIASFGGDVSNLVPPAVARRLK 152


>gnl|CDD|184424 PRK13964, coaD, phosphopantetheine adenylyltransferase;
           Provisional.
          Length = 140

 Score = 87.1 bits (216), Expect = 3e-18
 Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 7/140 (5%)

Query: 2   MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIF 61
           M+ A+Y GSFDP   GH++I+ +AL   + + + +  N  K+     +  R + +K  + 
Sbjct: 1   MKIAIYPGSFDPFHKGHLNILKKALKLFDKVYVVVSINPDKSNA-SDLDSRFKNVKNKLK 59

Query: 62  HFIPDSSNRVSVISFE-GLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIA 120
            F       V V+  E  L   +AK + A  ++R  R+  DF YE+ + + N+ L  ++ 
Sbjct: 60  DF-----KNVEVLINENKLTAEIAKKLGANFLIRSARNNIDFQYEIVLAAGNKSLNNDLE 114

Query: 121 TIALFAKESSRYVTSTLIRH 140
           TI +         +STL+RH
Sbjct: 115 TILIIPDYDKIEYSSTLLRH 134


>gnl|CDD|161722 TIGR00125, cyt_tran_rel, cytidyltransferase-related domain.
          Protein families that contain at least one copy of this
          domain include citrate lyase ligase,
          pantoate-beta-alanine ligase, glycerol-3-phosphate
          cytidyltransferase, ADP-heptose synthase,
          phosphocholine cytidylyltransferase, lipopolysaccharide
          core biosynthesis protein KdtB, the bifunctional
          protein NadR, and a number whose function is unknown.
          Many of these proteins are known to use CTP or ATP and
          release pyrophosphate.
          Length = 66

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 4/63 (6%)

Query: 4  KAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIG----CNSVKTKGFLSIQERSELIKQS 59
          + ++ G+FDP   GH+D++ +A    ++L++ +G     N +K +   S++ER E++K  
Sbjct: 1  RVIFVGTFDPFHLGHLDLLERAKELFDELIVGVGSDQFVNPLKGEPVFSLEERLEMLKAL 60

Query: 60 IFH 62
           + 
Sbjct: 61 KYV 63


>gnl|CDD|178839 PRK00071, nadD, nicotinic acid mononucleotide
          adenylyltransferase; Provisional.
          Length = 203

 Score = 39.8 bits (94), Expect = 4e-04
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 1  MMRKAVYTGSFDPITNGHMDIIIQALSFVE-DLVIAI--GCNSVKT-KGFLSIQERSELI 56
          M R  ++ G+FDP   GH+ I  +A   +  D V  +       K  K    ++ R  ++
Sbjct: 3  MKRIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGPPHKPQKPLAPLEHRLAML 62

Query: 57 KQSI 60
          + +I
Sbjct: 63 ELAI 66



 Score = 26.0 bits (58), Expect = 6.2
 Identities = 8/22 (36%), Positives = 10/22 (45%)

Query: 135 STLIRHLISIDADITSFVPDPV 156
           ST IR  I     I   +P+ V
Sbjct: 170 STAIRERIKEGRPIRYLLPEAV 191


>gnl|CDD|162401 TIGR01527, arch_NMN_Atrans, nicotinamide-nucleotide
           adenylyltransferase.  In some archaeal species, a
           lower-scoring paralog, uncharacterized with respect to
           activity, is also present. These score between trusted
           and noise cutoffs.
          Length = 165

 Score = 37.9 bits (88), Expect = 0.001
 Identities = 39/164 (23%), Positives = 60/164 (36%), Gaps = 14/164 (8%)

Query: 4   KAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGC--NSVKTKGFLSIQERSELIKQSIF 61
           +  Y G F P   GH+++I +    V++L+I IG    S   +   +  ER  +I QS+ 
Sbjct: 1   RGFYIGRFQPFHLGHLEVIKKIAEEVDELIIGIGSAQESHTLENPFTAGERILMITQSLK 60

Query: 62  HFIPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRDMT-DFDYEMRMTSVNRCLCPEIA 120
                      +I  E +  N        + V  +  MT  FD       + R L  E  
Sbjct: 61  EV---GDLTYYIIPIEDIERN-------SIWVSYVESMTPPFDVVYSNNPLVRRLFKEAG 110

Query: 121 TIALFAKESSRYV-TSTLIRHLISIDADITSFVPDPVCVFLKNI 163
                    +R   + T IR  +    D    VP  V   +K I
Sbjct: 111 YEVKRPPMFNRKEYSGTEIRRRMLNGEDWEHLVPKAVADVIKEI 154


>gnl|CDD|179235 PRK01153, PRK01153, nicotinamide-nucleotide adenylyltransferase;
          Provisional.
          Length = 174

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 2  MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIG 37
          MR A++ G F P   GH+++I   L  V++L+I IG
Sbjct: 1  MR-ALFIGRFQPFHKGHLEVIKWILEEVDELIIGIG 35


>gnl|CDD|180046 PRK05379, PRK05379, bifunctional nicotinamide mononucleotide
          adenylyltransferase/ADP-ribose pyrophosphatase;
          Provisional.
          Length = 340

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 25/96 (26%)

Query: 5  AVYTGSFDPITNGHMDIIIQALSFVEDLVIAIG-CNSVK-TKGFLSIQERSELIKQSIFH 62
           V+ G F P  NGH+ +I +ALS  + +++ IG  +  +  K   S +ER+++I+ +   
Sbjct: 9  LVFIGRFQPFHNGHLAVIREALSRAKKVIVLIGSADLARSIKNPFSFEERAQMIRAA--- 65

Query: 63 FIPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRD 98
                              LA    A+V +R LRD
Sbjct: 66 --------------------LAGIDLARVTIRPLRD 81


>gnl|CDD|161899 TIGR00482, TIGR00482, nicotinate (nicotinamide) nucleotide
          adenylyltransferase.  This model represents the
          predominant bacterial/eukaryotic adenylyltransferase
          for nicotinamide-nucleotide, its deamido form
          nicotinate nucleotide, or both. The first activity,
          nicotinamide-nucleotide adenylyltransferase (EC
          2.7.7.1), synthesizes NAD by the salvage pathway, while
          the second, nicotinate-nucleotide adenylyltransferase
          (EC 2.7.7.18) synthesizes the immediate precursor of
          NAD by the de novo pathway. In E. coli, NadD activity
          is biased toward the de novo pathway while salvage
          activity is channeled through the multifunctional NadR
          protein, but this division of labor may be exceptional.
          The given name of this model, nicotinate (nicotinamide)
          nucleotide adenylyltransferase, reflects the lack of
          absolute specificity with respect to substrate
          amidation state in most species.
          Length = 193

 Score = 35.0 bits (81), Expect = 0.012
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 6  VYTGSFDPITNGHMDIIIQALS-FVEDLVIAI-GCNSV--KTKGFLSIQERSELIKQSI 60
          ++ GSFDPI  GH+ +  +AL     D VI +   N    KT    S   R  ++K +I
Sbjct: 1  LFGGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANPPHKKTYEAASSHHRLAMLKLAI 59



 Score = 27.7 bits (62), Expect = 1.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 133 VTSTLIRHLISIDADITSFVPDPVC 157
           ++ST IR  I     I   +PDPV 
Sbjct: 160 ISSTEIRQRIRQGKSIEYLLPDPVI 184


>gnl|CDD|180860 PRK07152, nadD, putative nicotinate-nucleotide
          adenylyltransferase; Validated.
          Length = 342

 Score = 33.4 bits (77), Expect = 0.039
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 4/63 (6%)

Query: 2  MRKAVYTGSFDPITNGHMDIIIQALSFVE-DLVIAIGC--NSVKTKGFLSIQE-RSELIK 57
          M+ A++ GSFDPI  GH++I  +A+  ++ D +  +    N  K K   S  E R  ++K
Sbjct: 1  MKIAIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYINPFKKKQKASNGEHRLNMLK 60

Query: 58 QSI 60
           ++
Sbjct: 61 LAL 63


>gnl|CDD|181229 PRK08099, PRK08099, bifunctional DNA-binding transcriptional
          repressor/ NMN adenylyltransferase; Provisional.
          Length = 399

 Score = 31.2 bits (71), Expect = 0.16
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 1  MMRK-AVYTGSFDPITNGHMDIIIQALSFVEDLVIAIG 37
           M+K  V  G F P+  GH+ +I +A S V++L I I 
Sbjct: 50 QMKKIGVVFGKFYPLHTGHIYLIQRACSQVDELHIIIC 87


>gnl|CDD|179121 PRK00777, PRK00777, phosphopantetheine adenylyltransferase;
          Provisional.
          Length = 153

 Score = 29.0 bits (66), Expect = 0.74
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 2  MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAI 36
          M K    G+FDP+ +GH  ++ +A    + + I +
Sbjct: 1  MMKVAVGGTFDPLHDGHRALLRKAFELGKRVTIGL 35


>gnl|CDD|162400 TIGR01526, nadR_NMN_Atrans, nicotinamide-nucleotide
          adenylyltransferase, NadR type.  E. coli NadR has also
          been found to regulate the import of its substrate,
          nicotinamide ribonucleotide, but it is not known if the
          other members of this model share that activity.
          Length = 325

 Score = 28.7 bits (64), Expect = 0.86
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 2  MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIG 37
              V  G F P+  GH+ +I +A S V++L I +G
Sbjct: 1  KTIGVVFGKFYPLHTGHIYLIYEAFSKVDELHIVVG 36


>gnl|CDD|183910 PRK13238, tnaA, tryptophanase/L-cysteine desulfhydrase,
           PLP-dependent; Provisional.
          Length = 460

 Score = 27.5 bits (62), Expect = 2.2
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 11/41 (26%)

Query: 70  RVSVISFEG------LAVNLAKDISAQVIVRGLRDMTDFDY 104
           R   I +EG      LA    +D+ A  +  GL +  D DY
Sbjct: 282 RTLCILYEGFPTYGGLAG---RDMEA--LAVGLYEGMDEDY 317


>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed.
          Length = 644

 Score = 26.2 bits (57), Expect = 5.2
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 11/72 (15%)

Query: 64  IPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIA 123
           +PD   R  ++      V LA DI A +I RG    +  D           L   +   A
Sbjct: 321 LPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGAD-----------LANLVNEAA 369

Query: 124 LFAKESSRYVTS 135
           LFA   ++ V S
Sbjct: 370 LFAARGNKRVVS 381


>gnl|CDD|129003 smart00764, Citrate_ly_lig, Citrate lyase ligase C-terminal
          domain.  Proteins of this family contain the C-terminal
          domain of citrate lyase ligase EC:6.2.1.22.
          Length = 182

 Score = 26.1 bits (58), Expect = 6.1
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 13 PITNGHMDIIIQALSFVEDLVIAIGCNSVKT-KGFLSIQERSELIKQSIFHF 63
          P T GH  ++ QA +  + + + +    V       S  ER  L+K+     
Sbjct: 10 PFTLGHRYLVEQAAAECDWVHLFV----VSEDASLFSFDERFALVKKGTKDL 57


>gnl|CDD|129230 TIGR00124, cit_ly_ligase, [citrate (pro-3S)-lyase] ligase.  ATP is
           cleaved to AMP and pyrophosphate during the reaction.
           The carboxyl end is homologous to a number of
           cytidyltransferases that also release pyrophosphate.
          Length = 332

 Score = 25.6 bits (56), Expect = 7.5
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 12  DPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFL-SIQERSELIKQSIF 61
           +P TNGH  +I QA    + L + +    VK    L S  ER  L+KQ I 
Sbjct: 149 NPFTNGHRYLIEQAARQCDWLHLFV----VKEDASLFSYDERFALVKQGIQ 195


>gnl|CDD|181576 PRK08887, PRK08887, nicotinic acid mononucleotide
          adenylyltransferase; Provisional.
          Length = 174

 Score = 25.5 bits (56), Expect = 9.2
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 20/80 (25%)

Query: 1  MMRKAVYTGSFDPITNGHMDIIIQALSFVEDLVI-------AIGCNSVKTKGFLSIQERS 53
          M + AV+  +F+P + GH  +I     F  DLV+       A G      K  L  + R 
Sbjct: 1  MKKIAVFGSAFNPPSLGHKSVIESLSHF--DLVLLVPSIAHAWG------KTMLDYETRC 52

Query: 54 ELIKQSIFHFIPD-SSNRVS 72
          +L+      FI D   + V 
Sbjct: 53 QLVDA----FIQDLGLSNVQ 68


>gnl|CDD|184329 PRK13793, PRK13793, nicotinamide-nucleotide adenylyltransferase;
          Provisional.
          Length = 196

 Score = 25.3 bits (55), Expect = 9.4
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 6  VYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVK---TKGFLSIQERSELI 56
          V+ G F P    HM  I  AL     +++A+G   ++      FL+I ER ++I
Sbjct: 8  VFIGRFQPFHLAHMQTIEIALQQSRYVILALGSAQMERNIKNPFLAI-EREQMI 60


>gnl|CDD|140212 PTZ00185, PTZ00185, ATPase alpha subunit; Provisional.
          Length = 574

 Score = 25.4 bits (55), Expect = 9.6
 Identities = 12/57 (21%), Positives = 24/57 (42%)

Query: 99  MTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISIDADITSFVPDP 155
           M  F  +    ++ R      A  +    + S +  + +I ++ SID  I + +P P
Sbjct: 1   MRRFVAQYVAPAMGRLASTAAAGKSAAPGQKSFFKATEMIGYVHSIDGTIATLIPAP 57


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.326    0.139    0.392 

Gapped
Lambda     K      H
   0.267   0.0733    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,831,937
Number of extensions: 166078
Number of successful extensions: 415
Number of sequences better than 10.0: 1
Number of HSP's gapped: 410
Number of HSP's successfully gapped: 31
Length of query: 182
Length of database: 5,994,473
Length adjustment: 87
Effective length of query: 95
Effective length of database: 4,114,577
Effective search space: 390884815
Effective search space used: 390884815
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.6 bits)