RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780181|ref|YP_003064594.1| phosphopantetheine
adenylyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(182 letters)
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A
{Mycobacterium tuberculosis} PDB: 3nba_A* 3lcj_A* 1tfu_A
Length = 177
Score = 119 bits (300), Expect = 3e-28
Identities = 51/161 (31%), Positives = 87/161 (54%), Gaps = 7/161 (4%)
Query: 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIF 61
M AV GSFDP+T GH+DI +A + +++V+AI N KT F + ER ++K+S
Sbjct: 21 MTGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVNPAKTGMF-DLDERIAMVKESTT 79
Query: 62 HFIPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIAT 121
H + V GL V+ + IV+GLR TDF+YE++M +N+ + + T
Sbjct: 80 HL-----PNLRVQVGHGLVVDFVRSCGMTAIVKGLRTGTDFEYELQMAQMNKHI-AGVDT 133
Query: 122 IALFAKESSRYVTSTLIRHLISIDADITSFVPDPVCVFLKN 162
+ +V+S+L + + + D++ +P+PV L++
Sbjct: 134 FFVATAPRYSFVSSSLAKEVAMLGGDVSELLPEPVNRRLRD 174
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis,
nucleotidyltransferase; HET: PNS; 1.64A {Escherichia
coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A*
Length = 158
Score = 111 bits (278), Expect = 1e-25
Identities = 55/160 (34%), Positives = 91/160 (56%), Gaps = 6/160 (3%)
Query: 3 RKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIFH 62
++A+Y G+FDPITNGH+DI+ +A D VI S K +++ER L +Q+ H
Sbjct: 2 KRAIYPGTFDPITNGHIDIVTRATQMF-DHVILAIAASPSKKPMFTLEERVALAQQATAH 60
Query: 63 FIPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATI 122
V V+ F L N A++ A V++RGLR + DF+YEM++ +NR L PE+ ++
Sbjct: 61 L-----GNVEVVGFSDLMANFARNQHATVLIRGLRAVADFEYEMQLAHMNRHLMPELESV 115
Query: 123 ALFAKESSRYVTSTLIRHLISIDADITSFVPDPVCVFLKN 162
L + +++S+L++ + D+T F+P+ V L
Sbjct: 116 FLMPSKEWSFISSSLVKEVARHQGDVTHFLPENVHQALMA 155
>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A
biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A
{Thermus thermophilus} SCOP: c.26.1.3
Length = 160
Score = 107 bits (268), Expect = 2e-24
Identities = 51/159 (32%), Positives = 84/159 (52%), Gaps = 4/159 (2%)
Query: 4 KAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHF 63
VY GSFDP+TNGH+D+I +A E + +A+ N K +L S + +I
Sbjct: 2 HVVYPGSFDPLTNGHLDVIQRASRLFEKVTVAVLENPSKRGQYLF----SAEERLAIIRE 57
Query: 64 IPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIA 123
V +F GL V+ + + AQ IV+GLR ++D++YE++M +NR L P + T+
Sbjct: 58 ATAHLANVEAATFSGLLVDFVRRVGAQAIVKGLRAVSDYEYELQMAHLNRQLYPGLETLF 117
Query: 124 LFAKESSRYVTSTLIRHLISIDADITSFVPDPVCVFLKN 162
+ A +V+ST+++ + D++ VP LK
Sbjct: 118 ILAATRYSFVSSTMVKEIARYGGDVSKLVPPATLRALKA 156
>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide
binding fold, structural genomics, PSI; HET: NAD; 1.90A
{Methanothermobacterthermautotrophicus} SCOP: c.26.1.3
PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A*
Length = 181
Score = 102 bits (255), Expect = 5e-23
Identities = 25/165 (15%), Positives = 53/165 (32%), Gaps = 8/165 (4%)
Query: 1 MMRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSV--KTKGFLSIQERSELIKQ 58
M + + G P GH+ +I L V++L+I IG + + + ER ++ +
Sbjct: 2 MTMRGLLVGRMQPFHRGHLQVIKSILEEVDELIICIGSAQLSHSIRDPFTAGERVMMLTK 61
Query: 59 SIFHFIPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPE 118
++ + + ++ + ++ L D Y
Sbjct: 62 ALSEN-----GIPASRYYIIPVQDIECNALWVGHIKMLTPPFDRVYSGNPLVQRLFSEDG 116
Query: 119 IATIALFAKESSRYVTSTLIRHLISIDADITSFVPDPVCVFLKNI 163
+ T +R + D D S +P+ V + I
Sbjct: 117 YEVT-APPLFYRDRYSGTEVRRRMLDDGDWRSLLPESVVEVIDEI 160
>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET:
ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3
Length = 169
Score = 100 bits (249), Expect = 2e-22
Identities = 53/162 (32%), Positives = 90/162 (55%), Gaps = 6/162 (3%)
Query: 1 MMRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSI 60
M AV GSFDP+T GH+DII + + V N+ K S++ER EL+++
Sbjct: 1 MASIAVCPGSFDPVTYGHLDIIKRGAHIF-EQVYVCVLNNSSKKPLFSVEERCELLREVT 59
Query: 61 FHFIPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIA 120
++V + +GL ++ A+ +A+ I+RGLR ++DF+YEM+ TSVNR L I
Sbjct: 60 KDI-----PNITVETSQGLLIDYARRKNAKAILRGLRAVSDFEYEMQGTSVNRVLDESIE 114
Query: 121 TIALFAKESSRYVTSTLIRHLISIDADITSFVPDPVCVFLKN 162
T + A +++S++++ + D ++ FVP V + L+
Sbjct: 115 TFFMMANNQYSFLSSSIVKEVARYDGSVSEFVPPEVELALQQ 156
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrolase; two
individual domains; HET: APR NAD; 2.60A {Synechocystis
SP}
Length = 341
Score = 95.6 bits (237), Expect = 5e-21
Identities = 31/171 (18%), Positives = 58/171 (33%), Gaps = 15/171 (8%)
Query: 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCN--SVKTKGFLSIQERSELIKQS 59
+ +Y G F P GH+ + AL E ++I +G + + T+ ER +I+
Sbjct: 7 YQYGIYIGRFQPFHLGHLRTLNLALEKAEQVIIILGSHRVAADTRNPWRSPERMAMIEAC 66
Query: 60 IFHFIPDSSNRVSVISFEGLAVNLAKDIS-----AQVIVRGLRDMTDFDYEMRMTSVNRC 114
P RV ++ + ++ I G + + +S
Sbjct: 67 ---LSPQILKRVHFLTVRDWLYSDNLWLAAVQQQVLKITGGSNSVVVLGHRKDASSYYLN 123
Query: 115 LCPEIATIALFAKESSRYVTSTLIRHLIS--IDADITSFVPDPVCVFLKNI 163
L P+ + +ST IR + D VP + +L+
Sbjct: 124 LFPQWDYLETGHYP---DFSSTAIRGAYFEGKEGDYLDKVPPAIADYLQTF 171
>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural
genomics, JCSG, protein structure initiative, PSI; HET:
PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3
Length = 173
Score = 95.3 bits (236), Expect = 7e-21
Identities = 56/159 (35%), Positives = 92/159 (57%), Gaps = 6/159 (3%)
Query: 4 KAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHF 63
KAVY GSFDPIT GH+DII +ALS D ++ + + + K +++ER +LI++ +
Sbjct: 14 KAVYPGSFDPITLGHVDIIKRALSIF-DELVVLVTENPRKKCMFTLEERKKLIEEVLSDL 72
Query: 64 IPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIA 123
+ V V GL V+ K +V+VRGLR +TD++YE++M N+ L ++ T+
Sbjct: 73 -----DGVKVDVHHGLLVDYLKKHGIKVLVRGLRAVTDYEYELQMALANKKLYSDLETVF 127
Query: 124 LFAKESSRYVTSTLIRHLISIDADITSFVPDPVCVFLKN 162
L A E +++S+L++ + D+T +VP V L
Sbjct: 128 LIASEKFSFISSSLVKEVALYGGDVTEWVPPEVARALNE 166
>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle
structural genomics center for infectious disease,
coenzyme A; HET: 4PS ADE PG4; 1.60A {Burkholderia
pseudomallei 1710B} PDB: 3ikz_A*
Length = 170
Score = 93.1 bits (230), Expect = 3e-20
Identities = 53/168 (31%), Positives = 96/168 (57%), Gaps = 6/168 (3%)
Query: 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIF 61
M AVY G+FDP+T GH D++ +A S D ++ +S K F S++ER ++ + +
Sbjct: 5 MVVAVYPGTFDPLTRGHEDLVRRASSIF-DTLVVGVADSRAKKPFFSLEERLKIANEVLG 63
Query: 62 HFIPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIAT 121
H+ V V+ F GL + + A+VIVRGLR ++DF+YE +M +NR L P++ T
Sbjct: 64 HY-----PNVKVMGFTGLLKDFVRANDARVIVRGLRAVSDFEYEFQMAGMNRYLLPDVET 118
Query: 122 IALFAKESSRYVTSTLIRHLISIDADITSFVPDPVCVFLKNIVISLVK 169
+ + + ++++ T++R + + D++ FV V +L V ++ +
Sbjct: 119 MFMTPSDQYQFISGTIVREIAQLGGDVSKFVFPSVEKWLTEKVAAMAQ 166
>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A
biosynthetic pathway, coenzyme A biosynthesis,
cytoplasm, nucleotidyltransferase; HET: PPS; 2.40A
{Staphylococcus aureus}
Length = 168
Score = 92.0 bits (227), Expect = 8e-20
Identities = 59/162 (36%), Positives = 96/162 (59%), Gaps = 6/162 (3%)
Query: 1 MMRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSI 60
AV GSFDPIT GH+DII ++ D + + K +G S++ER +LI+QS+
Sbjct: 2 EHTIAVIPGSFDPITYGHLDIIERSTDRF-DEIHVCVLKNSKKEGTFSLEERMDLIEQSV 60
Query: 61 FHFIPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIA 120
H V V F GL V+ + + A+ I+RGLR ++DF+YE+R+TS+N+ L EI
Sbjct: 61 KHL-----PNVKVHQFSGLLVDYCEQVGAKTIIRGLRAVSDFEYELRLTSMNKKLNNEIE 115
Query: 121 TIALFAKESSRYVTSTLIRHLISIDADITSFVPDPVCVFLKN 162
T+ + + + +++S++++ + + ADI+ FVP V LK
Sbjct: 116 TLYMMSSTNYSFISSSIVKEVAAYRADISEFVPPYVEKALKK 157
>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural
genomics; HET: ATP; 2.00A {Methanocaldococcus
jannaschii} SCOP: c.26.1.3
Length = 168
Score = 91.7 bits (227), Expect = 8e-20
Identities = 29/164 (17%), Positives = 52/164 (31%), Gaps = 12/164 (7%)
Query: 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCN--SVKTKGFLSIQERSELIKQS 59
+R G F P GH+++I + V++++I IG S + + ER +I QS
Sbjct: 1 LR-GFIIGRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQKSHTLENPFTAGERILMITQS 59
Query: 60 IFHFIPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEI 119
+ + + + ++ + V L D Y
Sbjct: 60 LKDY--------DLTYYPIPIKDIEFNSIWVSYVESLTPPFDIVYSGNPLVRVLFEERGY 111
Query: 120 ATIALFAKESSRYVTSTLIRHLISIDADITSFVPDPVCVFLKNI 163
+ + T IR + VP V +K I
Sbjct: 112 EVKRPEMFN-RKEYSGTEIRRRMLNGEKWEHLVPKAVVDVIKEI 154
>1tfu_A Phosphopantetheine adenylyltransferase; transport protein,
structural genomics, PSI, protein structure initiative;
1.99A {Mycobacterium tuberculosis} SCOP: c.26.1.3
Length = 157
Score = 86.2 bits (212), Expect = 3e-18
Identities = 45/161 (27%), Positives = 81/161 (50%), Gaps = 7/161 (4%)
Query: 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIF 61
M AV GSFDP+T GH+DI +A + +++V+AI N KT F + + + + +
Sbjct: 1 MTGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVNPAKTGMFDLDERIAMVKESTTH 60
Query: 62 HFIPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIAT 121
GL V+ + IV+GLR TDF+YE++M +N+ + + T
Sbjct: 61 LPNLRVQV------GHGLVVDFVRSCGMTAIVKGLRTGTDFEYELQMAQMNKHI-AGVDT 113
Query: 122 IALFAKESSRYVTSTLIRHLISIDADITSFVPDPVCVFLKN 162
+ +V+S+L + + + D++ +P+PV L++
Sbjct: 114 FFVATAPRYSFVSSSLAKEVAMLGGDVSELLPEPVNRRLRD 154
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual
domains, hydrolase; HET: AMP; 2.30A {Francisella
tularensis} PDB: 2r5w_B
Length = 352
Score = 82.5 bits (203), Expect = 5e-17
Identities = 27/163 (16%), Positives = 51/163 (31%), Gaps = 11/163 (6%)
Query: 1 MMRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVK--TKGFLSIQERSELIKQ 58
M +V+ G F P GH+ II AL + ++I IG K S ++R ++I+
Sbjct: 6 MYDISVFIGRFQPFHKGHLHNIIIALQNSKKVIINIGSCFNTPNIKNPFSFEQRKQMIES 65
Query: 59 SIFHFIPDSSNRVSVISFEGLAVNLAKDIS-----AQVIVRGLRDMTDFDYEMRMTSVNR 113
+ D V + K + + + +S
Sbjct: 66 DLQVAGIDLD-TVVIEPLADYFYQEQKWQDELRKNVYKHAKNNNSIAIVGHIKDSSSYYI 124
Query: 114 CLCPEIATIALFAKESSRYVTSTLIRHLISIDADITSFVPDPV 156
PE I + ++ + +T R ++
Sbjct: 125 RSFPEWDYIGV---DNYKNFNATEFRQKFYNGIISKQYMCSND 164
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase,
ribosylnicotinamide kinase; HET: NAD; 2.90A {Haemophilus
influenzae} SCOP: c.26.1.3 c.37.1.1
Length = 365
Score = 67.4 bits (164), Expect = 2e-12
Identities = 22/154 (14%), Positives = 54/154 (35%), Gaps = 14/154 (9%)
Query: 3 RKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGF---------LSIQERS 53
+ V G F P+ GH+++I +A S V++L + + ++V+ ++Q+R
Sbjct: 3 KVGVIFGKFYPVHTGHINMIYEAFSKVDELHVIVCSDTVRDLKLFYDSKMKRMPTVQDRL 62
Query: 54 ELIKQS----IFHFIPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMT 109
++Q + S+ + ++ + + F E +
Sbjct: 63 RWMQQIFKYQKNQIFIHHLVEDGIPSYPNGWQSWSEAVKTLFHEKHFEPSIVFSSEPQDK 122
Query: 110 SVNRCLCPEIATIALFAKESSRYVTSTLIRHLIS 143
+ + + + V++T IR
Sbjct: 123 APYEKYLG-LEVSLVDPDRTFFNVSATKIRTTPF 155
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG,
midwest center for structural genomics, PSI; 1.65A
{Vibrio parahaemolyticus}
Length = 177
Score = 67.3 bits (163), Expect = 2e-12
Identities = 25/170 (14%), Positives = 56/170 (32%), Gaps = 12/170 (7%)
Query: 1 MMRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSI 60
M + A++ +F+P + GH +I F DLV+ + + + +
Sbjct: 1 MKKIAIFGSAFNPPSLGHKSVIESLSHF--DLVLLEPSIAHAWGKNMLDYPIRCKLVDAF 58
Query: 61 FHFIPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRD-MTDFDYEMRMTSVNRCLCPE- 118
+ + V E + ++ ++ +++ D + N +
Sbjct: 59 IKDMG--LSNVQRSDLEQALYQPGQSVTTYALLEKIQEIYPTADITFVIGPDNFFKFAKF 116
Query: 119 ------IATIALFAKESSRYVTSTLIRHLISIDADITSFVPDPVCVFLKN 162
+ A + ST IR+ + DI+++ V L N
Sbjct: 117 YKAEEITERWTVMACPEKVKIRSTDIRNALIEGKDISTYTTPTVSELLLN 166
>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman
fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB:
1kaq_A*
Length = 194
Score = 65.8 bits (159), Expect = 5e-12
Identities = 26/181 (14%), Positives = 52/181 (28%), Gaps = 21/181 (11%)
Query: 3 RKAVYTGSFDPITNGHMDIIIQALS-FVEDLVIAIGCNSVKTKGFLSIQERSELIKQSI- 60
+ ++ G+FDP NGH+ + + L D + + K + ++
Sbjct: 8 KIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPPHKQNEDYTDSFHRVEMLKL 67
Query: 61 ------FHFIPDSSNRVSVISFEGLAVNLAKDISAQV-------------IVRGLRDMTD 101
+ S+ V+L K + + +
Sbjct: 68 AIQSNPSFKLELVEMEREGPSYTFDTVSLLKQRYPNDQLFFIIGADMIEYLPKWYKLDEL 127
Query: 102 FDYEMRMTSVNRCLCPEIATIALFAKESSRYVTSTLIRHLISIDADITSFVPDPVCVFLK 161
+ + E LFA V+ST+IR +PD V +++
Sbjct: 128 LNLIQFIGVKRPGFHVETPYPLLFADVPEFEVSSTMIRERFKSKKPTDYLIPDKVKKYVE 187
Query: 162 N 162
Sbjct: 188 E 188
>1nup_A FKSG76; NAD biosynthesis, cytoplasm, mitochondria, pyridine
adenylyltransferase, enzyme catalysi; HET: NMN; 1.90A
{Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A
1nus_A* 1nut_A* 1nuu_A*
Length = 252
Score = 64.5 bits (156), Expect = 1e-11
Identities = 28/225 (12%), Positives = 61/225 (27%), Gaps = 63/225 (28%)
Query: 1 MMRKAVYTGSFDPITNGHMDIIIQALS--------FVEDLVIAIGCNSVKTKGFLSIQER 52
+ + GSF+PITN H+ + A V +I+ ++ K + R
Sbjct: 5 IPVVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKKDLAASHHR 64
Query: 53 SELIKQSIFH-----------------------------------FIPDSSNRVSVISFE 77
+ + ++ + + ++ S
Sbjct: 65 VAMARLALQTSDWIRVDPWESEQAQWMETVKVLRHHHSKLLRSPPQMEGPDHGKALFSTP 124
Query: 78 GLAVNLAKDISAQVIVRGLRDMTDFDYEMRM--------------------TSVNRCLCP 117
L A V+ D ++ + + L
Sbjct: 125 AAVPELKLLCGADVLKTFQTPNLWKDAHIQEIVEKFGLVCVGRVSHDPKGYIAESPILRM 184
Query: 118 EIATIALFAKESSRYVTSTLIRHLISIDADITSFVPDPVCVFLKN 162
I L + +++T IR + + +PD V ++K+
Sbjct: 185 HQHNIHLAKEPVQNEISATYIRRALGQGQSVKYLIPDAVITYIKD 229
>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT;
1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A*
Length = 213
Score = 63.5 bits (153), Expect = 2e-11
Identities = 21/204 (10%), Positives = 51/204 (25%), Gaps = 45/204 (22%)
Query: 4 KAVYTGSFDPITNGHMDIIIQALS-FVEDLVIAIGCNSVKTKGFLSIQER---------- 52
+A++ G+FDP+ GH+ + + V I N +
Sbjct: 5 QALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPPHRPQPEANSVQRKHMLELAI 64
Query: 53 ---------------------SELIKQSIFHFIPDSS----NRVSVISFEGLAVNLAKDI 87
++ +K+ PD + +
Sbjct: 65 ADKPLFTLDERELKRNAPSYTAQTLKEWRQEQGPDVPLAFIIGQDSLLTFPTWYEYETIL 124
Query: 88 SAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRY---------VTSTLI 138
++ R + L + + + +++T+I
Sbjct: 125 DNAHLIVCRRPGYPLEMAQPQYQQWLEDHLTHNPEDLHLQPAGKIYLAETPWFNISATII 184
Query: 139 RHLISIDADITSFVPDPVCVFLKN 162
R + +P+PV ++
Sbjct: 185 RERLQNGESCEDLLPEPVLTYINQ 208
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltransferase; NAD,
nucleotidyltransferase, pyridine nucleotide
biosynthesis; HET: NXX; 1.70A {Bacillus anthracis} PDB:
3dv2_A 3e27_A* 2qtn_A* 2qtm_A*
Length = 189
Score = 60.9 bits (146), Expect = 2e-10
Identities = 21/183 (11%), Positives = 45/183 (24%), Gaps = 21/183 (11%)
Query: 1 MMRKAVYTGSFDPITNGHMDIIIQALS-FVEDLVIAIGCNSVKTKGFLSIQERSELIKQS 59
M + + G+FDP GH+ I + + V + K +I ++
Sbjct: 1 MRKIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQGRNITSVESRLQML 60
Query: 60 --------------IFHFIPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYE 105
S + + ++ E
Sbjct: 61 ELATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLPKWYNIE 120
Query: 106 MRMTSVNRCLCPEIATIALFAKESSRY------VTSTLIRHLISIDADITSFVPDPVCVF 159
+ V + V+S+L+R +P+ V V+
Sbjct: 121 ALLDLVTFVGVARPGYKLRTPYPITTVEIPEFAVSSSLLRERYKEKKTCKYLLPEKVQVY 180
Query: 160 LKN 162
++
Sbjct: 181 IER 183
>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat,
nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB:
2h2a_A*
Length = 189
Score = 60.1 bits (144), Expect = 2e-10
Identities = 26/183 (14%), Positives = 48/183 (26%), Gaps = 21/183 (11%)
Query: 1 MMRKAVYTGSFDPITNGHMDIIIQALS-FVEDLVIAIGCN--------------SVKTKG 45
M + +Y G F+PI HM + + D + T
Sbjct: 1 MKKIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSPLKKHHDFIDVQHRLTMI 60
Query: 46 FLSIQERSELIKQSIFHFIPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYE 105
+ I E S I ++ + + + E
Sbjct: 61 QMIIDELGFGDICDDEIKRGGQSYTYDTIKAFKEQHKDSELYFVIGTDQYNQLEKWYQIE 120
Query: 106 MRMTSVNRCLCP------EIATIALFAKESSRYVTSTLIRHLISIDADITSFVPDPVCVF 159
V + + + + ++ST+IR +S I VP V +
Sbjct: 121 YLKEMVTFVVVNRDKNSQNVENAMIAIQIPRVDISSTMIRQRVSEGKSIQVLVPKSVENY 180
Query: 160 LKN 162
+K
Sbjct: 181 IKG 183
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown
function, structural genomics, MCSG, PSI-2, protein
structure initiative; 1.60A {Archaeoglobus fulgidus}
Length = 148
Score = 55.8 bits (133), Expect = 5e-09
Identities = 17/138 (12%), Positives = 43/138 (31%), Gaps = 1/138 (0%)
Query: 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIF 61
M+ A+ G+F+P+ GH +I A+ + + + + + +++
Sbjct: 1 MKVAL-GGTFEPLHEGHKKLIDVAIKLGGRDITIGVTSDRMARARIRSVLPFAIRAENVK 59
Query: 62 HFIPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIAT 121
++ I D+ + +V + I
Sbjct: 60 RYVMRKYGFEPEIVKITNPYGKTLDVDFEYLVVSPETYEMALKINQKREELGKRKITIVK 119
Query: 122 IALFAKESSRYVTSTLIR 139
+ E + ++ST I+
Sbjct: 120 VDWMMAEDGKPISSTRIK 137
>3glv_A Lipopolysaccharide core biosynthesis protein; structural genomics,
PSI, MCSG, protein structure initiative; HET: AMP; 1.99A
{Thermoplasma volcanium GSS1}
Length = 143
Score = 50.8 bits (120), Expect = 2e-07
Identities = 16/147 (10%), Positives = 51/147 (34%), Gaps = 8/147 (5%)
Query: 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIF 61
M + + TG FD + GH+ + ++ + + + + + + +
Sbjct: 2 MIRVMATGVFDILHLGHIHYLKESKKLGD---ELVVVVARDSTARNNGKIPIFDENSRLA 58
Query: 62 HFIPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRDMTDFDY-EMRMTSVNRCLCPEIA 120
+++ EG + ++ +I G D + E + S L +
Sbjct: 59 LISELKVVDRAILGHEGDMMKTVIEVKPDIITLG----YDQKFDEAELQSKINKLGITVK 114
Query: 121 TIALFAKESSRYVTSTLIRHLISIDAD 147
+ + + +S++ + ++ + +
Sbjct: 115 IVRISKYDGQLNSSSSVRKKIMELIGE 141
>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta
domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa}
PDB: 1yul_A* 1yun_A*
Length = 242
Score = 50.3 bits (119), Expect = 3e-07
Identities = 28/205 (13%), Positives = 62/205 (30%), Gaps = 43/205 (20%)
Query: 1 MMRKAVYTGSFDPITNGHMDIIIQALS-FVEDLVIAI--GCNSVKTKGFLSIQERSELIK 57
R ++ G+FDP+ GHM ++ F D + + + +S +R +++
Sbjct: 22 GKRIGLFGGTFDPVHIGHMRSAVEMAEQFALDELRLLPNARPPHRETPQVSAAQRLAMVE 81
Query: 58 QSIFH------------------------------------FIPDSSNRVSVISFEGLAV 81
+++ F+ + +
Sbjct: 82 RAVAGVERLTVDPRELQRDKPSYTIDTLESVRAELAADDQLFMLIGWDAFCGLPTWHRWE 141
Query: 82 NLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIA----LFAKESSRYVTSTL 137
L V+ R D + + + P+ F ++ V++T
Sbjct: 142 ALLDHCHIVVLQRPDADSEPPESLRDLLAARSVADPQALKGPGGQITFVWQTPLAVSATQ 201
Query: 138 IRHLISIDADITSFVPDPVCVFLKN 162
IR L+ + VPD V +++
Sbjct: 202 IRALLGAGRSVRFLVPDAVLNYIEA 226
>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase;
nucleotidyltransferase superfamily; HET: NAD; 2.20A
{Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A*
1kku_A 1gzu_A*
Length = 279
Score = 47.1 bits (111), Expect = 2e-06
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 13/83 (15%)
Query: 5 AVYTGSFDPITNGHMDIIIQALS-------FVEDLVIAIGCN-SVKTKGFLSIQERSELI 56
+ GSF+PITN H+ + A + I + K KG + R +
Sbjct: 11 LLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDAYKKKGLIPAYHRVIMA 70
Query: 57 KQSIFHFIPDSSNRVSVISFEGL 79
+ + +S V V ++E L
Sbjct: 71 ELAT-----KNSKWVEVDTWESL 88
Score = 27.5 bits (60), Expect = 1.6
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 133 VTSTLIRHLISIDADITSFVPDPVCVFLKN 162
++ST IR + I VPD V +++
Sbjct: 221 ISSTKIRRALRRGQSIRYLVPDLVQEYIEK 250
>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural
genomics, PSI, MCSG, protein structure initiative; 1.91A
{Methanocaldococcus jannaschii DSM2661}
Length = 357
Score = 41.5 bits (97), Expect = 1e-04
Identities = 12/100 (12%), Positives = 34/100 (34%), Gaps = 5/100 (5%)
Query: 9 GSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSI---QERSELIKQSIFHFIP 65
++P+ GH + + + + G +G R+E+ ++ +
Sbjct: 59 TEYNPLHKGHKYALEKGKEHGIFISVLPGPLERSGRGIPYFLNRYIRAEMAIRAGADIVV 118
Query: 66 DSSNRVSVIS--FEGLAVNLAKDISAQVIVRGLRDMTDFD 103
+ + S + + + + A++I RG +
Sbjct: 119 EGPPMGIMGSGQYMRCLIKMFYSLGAEIIPRGYIPEKTME 158
>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A
{Staphylococcus aureus}
Length = 132
Score = 40.6 bits (94), Expect = 2e-04
Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 2/94 (2%)
Query: 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIF 61
M++ + G++D + GH++++ +A + L++A+ + E K +
Sbjct: 1 MKRVITYGTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQIKHKKSYYDYEQRKMMLE 60
Query: 62 HFIPDSSNRVSVISFEGLAVNLAKDISAQVIVRG 95
+ V G + + V V G
Sbjct: 61 SIRYV--DLVIPEKGWGQKEDDVEKFDVDVFVMG 92
>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP;
2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A*
Length = 129
Score = 37.9 bits (87), Expect = 0.001
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTK 44
M+K + G+FD + GH+ ++ +A + LV+AI + +
Sbjct: 1 MKKVITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQ 43
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP,
CTP, phosphoethanolamine, SGC, structural genomics
consortium; HET: C5P; 2.00A {Homo sapiens}
Length = 341
Score = 37.2 bits (86), Expect = 0.002
Identities = 15/105 (14%), Positives = 36/105 (34%), Gaps = 11/105 (10%)
Query: 6 VYT-GSFDPITNGHMDIIIQALSFVEDLVIAIG----CNSVKTKGFLSIQERSELIKQSI 60
V+ G +D + GH + + QA + + L++ + K + +ER ++++
Sbjct: 10 VWCDGCYDMVHYGHSNQLRQARAMGDYLIVGVHTDEEIAKHKGPPVFTQEERYKMVQAIK 69
Query: 61 FHFIPDSSNRVSVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYE 105
+ + V + + + V G D
Sbjct: 70 W------VDEVVPAAPYVTTLETLDKYNCDFCVHGNDITLTVDGR 108
Score = 33.0 bits (75), Expect = 0.041
Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 15/102 (14%)
Query: 3 RKAVYT-GSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKT----KG----FLSIQERS 53
+Y G+FD GH+D + + E I G + + KG +++ ER+
Sbjct: 198 ETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQEVNHYKGKNYPIMNLHERT 257
Query: 54 ELIKQSIFHFIPDSSNRVSVISFEGLAVNLAKDISAQVIVRG 95
+ + + V + + + L ++ G
Sbjct: 258 LSVLACRYV------SEVVIGAPYAVTAELLSHFKVDLVCHG 293
>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold,
phospholipid synthesis, phosphatidylcholine,
phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A
{Rattus norvegicus}
Length = 236
Score = 32.0 bits (72), Expect = 0.078
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 6 VYT-GSFDPITNGHMDIIIQALSFVEDLVIAIGCNS 40
VY G FD +GH ++QA + + + +G S
Sbjct: 79 VYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCS 114
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, structural
genomics; HET: NAP; 2.25A {Homo sapiens}
Length = 346
Score = 31.7 bits (72), Expect = 0.094
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 4/83 (4%)
Query: 73 VISF-EGLAVNLAKDISAQVIVRGLRDMTDF-DYEMRMTSVNRCLCPE-IATIALFAKES 129
+ + G+A +I+ + T D ++C + IA A +
Sbjct: 210 MSMYVLGMAEEFKGEIAVNALWPKTAIHTAAMDMLGGPGIESQCRKVDIIADAAYSIFQK 269
Query: 130 SRYVT-STLIRHLISIDADITSF 151
+ T + +I I + I +F
Sbjct: 270 PKSFTGNFVIDENILKEEGIENF 292
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 31.1 bits (70), Expect = 0.16
Identities = 30/143 (20%), Positives = 51/143 (35%), Gaps = 54/143 (37%)
Query: 3 RKAVYTGSFDPITNG-H-------MDIIIQALSF------VEDLVIAI-----GCNSVKT 43
RK ++ F P+ + H D+I + L +D+ I + G +
Sbjct: 412 RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVL 471
Query: 44 KGFLSIQERSELIKQSIF---------------HFI---PDSSNRVSVI---SFEGLAVN 82
G SI ER ++ I H + P ++ + V+ + +G V
Sbjct: 472 SG--SISER--IVDC-IIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGV- 525
Query: 83 LAKDISAQVIVRGLRDM-TDFDY 104
+VIV G D+ D DY
Sbjct: 526 -------RVIVAGTLDINPDDDY 541
Score = 28.4 bits (63), Expect = 0.96
Identities = 15/78 (19%), Positives = 21/78 (26%), Gaps = 32/78 (41%)
Query: 27 SFVEDLVIAIG------------CNSVKTKGF-----LSIQERSELIKQSIFHFIPDSSN 69
V DL+ V T+G L PD
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN-----------TPDKDY 230
Query: 70 RVSV-ISFE--GLAVNLA 84
+S+ IS G+ + LA
Sbjct: 231 LLSIPISCPLIGV-IQLA 247
>1ug7_A 2610208M17RIK protein; hypothetical protein FLJ12806, four helical
UP-and-DOWN bundle, structural genomics; NMR {Mus
musculus} SCOP: a.24.24.1
Length = 128
Score = 31.1 bits (70), Expect = 0.17
Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 76 FEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATIALFAKESSRYVTS 135
++ LA +L K+ AQ + ++F E + T C E+ + AL + +S
Sbjct: 42 YQILARHLQKEAQAQ------HNNSEFTEEQKKTIGKIATCLELRSAALQSTQSQEEFKL 95
Query: 136 TLIRHLISIDADITSFVPD-PVCV 158
++ L I +I ++ + P V
Sbjct: 96 EDLKKLEPILKNILTYNKEFPFDV 119
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit;
hydrolase, metallo-beta-lactamase, beta-CAsp, RNA
processing; 2.59A {Methanosarcina mazei}
Length = 640
Score = 28.9 bits (64), Expect = 0.61
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 19/68 (27%)
Query: 45 GFLSIQERSELIKQSIFHFIPDSSNRVSVISFEG------------------LAVNLAKD 86
+ I++ +K I +P ++ + FEG + NLAK+
Sbjct: 2 SHMPIEDVLLDLKHKIEKNLPAGVT-ITDVEFEGPQLVLYTEEPRKFADDGNIIRNLAKE 60
Query: 87 ISAQVIVR 94
+ ++ +R
Sbjct: 61 LRTRIAMR 68
>3hws_A ATP-dependent CLP protease ATP-binding subunit CLPX; CLPXP, AAA+
molecular machine, hexamer, asymmetric,, chaperone,
metal-binding; HET: ADP; 3.25A {Escherichia coli k-12}
PDB: 3hte_A
Length = 363
Score = 26.9 bits (59), Expect = 2.4
Identities = 23/148 (15%), Positives = 48/148 (32%), Gaps = 11/148 (7%)
Query: 8 TGSFDPITNGHMDIIIQALSFVEDLVIAIGCNSVKTKGFLSIQERSELIKQSIFHFIPDS 67
G+F + + + + L+ E +LIK F IP+
Sbjct: 187 GGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIK---FGLIPEF 243
Query: 68 SNRVSVI-SFEGLA----VNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCPEIATI 122
R+ V+ + L+ + + K+ + + ++ IA
Sbjct: 244 IGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRD---EALDAIAKK 300
Query: 123 ALFAKESSRYVTSTLIRHLISIDADITS 150
A+ K +R + S + L+ D+ S
Sbjct: 301 AMARKTGARGLRSIVEAALLDTMYDLPS 328
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 4.7
Identities = 5/20 (25%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Query: 120 ATIALFAKESSR--YVTSTL 137
A++ L+A +S+ + +T+
Sbjct: 27 ASLKLYADDSAPALAIKATM 46
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp
family, KH domain, ribonuclease, ME beta-lactamase
superfamily, archaea; 2.60A {Pyrococcus horikoshii}
PDB: 3af6_A*
Length = 651
Score = 25.1 bits (54), Expect = 9.1
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 19/65 (29%)
Query: 48 SIQERSELIKQSIFHFIPDSSNRVSVISFEG------------------LAVNLAKDISA 89
+ + I+ + +P + ++ I FEG L +LAK +
Sbjct: 10 QVDQILRDIRAVVNQMVPKEAK-ITEIEFEGPELVIYVKNPEAIMKDGELIKDLAKVLKK 68
Query: 90 QVIVR 94
++ VR
Sbjct: 69 RISVR 73
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, antibiotic biosynthesis, NADPH;
HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB:
2jap_A*
Length = 247
Score = 25.2 bits (55), Expect = 9.3
Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 12/78 (15%)
Query: 73 VISF-EGLAVNLAKD-ISAQVI---------VRGLRDMTDFDYEMRMTSVNRCLCPE-IA 120
V +F E L + + + VI + + + S R L + IA
Sbjct: 162 VNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHITHTATKEMYEQRISQIRKLQAQDIA 221
Query: 121 TIALFAKESSRYVTSTLI 138
+A + + T I
Sbjct: 222 EAVRYAVTAPHHATVHEI 239
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.326 0.139 0.392
Gapped
Lambda K H
0.267 0.0533 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,479,772
Number of extensions: 60638
Number of successful extensions: 229
Number of sequences better than 10.0: 1
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 48
Length of query: 182
Length of database: 5,693,230
Length adjustment: 87
Effective length of query: 95
Effective length of database: 3,584,002
Effective search space: 340480190
Effective search space used: 340480190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.6 bits)