HHsearch alignment for GI: 254780182 and conserved domain: COG0188
>COG0188 GyrA Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=2119.48 Aligned_cols=794 Identities=55% Similarity=0.893 Sum_probs=775.5
Q ss_pred EEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 66600999998767877799886313754000897367899999998789999981134042556643668870478999
Q gi|254780182|r 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95 (910)
Q Consensus 16 i~~~~~~~~m~~syl~Ya~svI~~RAlPd~rDGlKpv~Rrily~m~~~~~~~~~~~~K~a~ivg~v~gkyHPHGd~siy~ 95 (910)
T Consensus 8 i~~v~i~~e~~~syl~YAmsVIv~RALPdVRDGLKPVqRRILYaM~e~gl~~d~~~kKsAriVGdvmGkyHPHGDssiYd 87 (804)
T COG0188 8 IEPIDIEDEMKRSYLDYAMSVIVGRALPDVRDGLKPVQRRILYAMFELGLTPDKKYKKSARIVGDVMGKYHPHGDSSIYD 87 (804)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHH
T ss_conf 51265999999999988799886401775234786089998899997499989970003066775335678887168999
Q ss_pred HHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEECCCCCCCCH
Q ss_conf 99971220111561314788708877697201357899978999999863076840533068988548503432273211
Q gi|254780182|r 96 ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175 (910)
Q Consensus 96 a~v~maq~~~~r~plidg~GnfGs~dgd~~AA~RYte~rl~~~~~~~l~~i~~~tv~~~~n~D~~~~EP~vlP~~~P~lL 175 (910)
T Consensus 88 alVRMAQdfs~RypLVdgqGNFGSiDgD~aAAMRYTEaRLs~ia~elL~di~kdtVdf~~NyDg~~~EP~VLPa~~PnLL 167 (804)
T COG0188 88 ALVRMAQDFSLRYPLVDGQGNFGSIDGDPAAAMRYTEARLSKIAEELLEDIDKDTVDFVPNYDGSEKEPEVLPARFPNLL 167 (804)
T ss_pred HHHHHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 99997104341576231687788999973787778886231989998744465705144079998558740346687067
Q ss_pred HCCCCCEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf 01676101013317898547899999988761877688888863458668874434475889999870120389999886
Q gi|254780182|r 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255 (910)
Q Consensus 176 ~nG~~GIAvGmaTnippHNl~Ev~~a~~~~i~~p~~~~~eL~~~i~GPDFPTGG~I~~~~~i~~~y~tGrG~i~iR~k~~ 255 (910)
T Consensus 168 vNGssGIAVGmATnIPPHNl~Ev~da~~~li~np~~~~~~lm~~i~GPDFPTgg~I~g~~~I~~aY~tGrG~i~vRa~~~ 247 (804)
T COG0188 168 VNGSSGIAVGMATNIPPHNLGEVIDALIALIDNPDATIDELMEIIKGPDFPTGGIIIGRSGIREAYETGRGSIRVRAKAE 247 (804)
T ss_pred ECCCCCEECCEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCEEECCHHHHHHHCCCCCEEEEEEEEE
T ss_conf 60687410123057799898999999999970999746777310699989986668541456787700784599998999
Q ss_pred EEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHCCHHC
Q ss_conf 54336784599992464435289999999999871665014458730374655799994798877899999997610110
Q gi|254780182|r 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335 (910)
Q Consensus 256 ie~~~~~k~~ivItEiPY~vnk~~lie~Ia~lv~~~ki~gI~dirDeSdr~giRivielKr~~~~~~vln~Lyk~T~Lq~ 335 (910)
T Consensus 248 iE~~~~gr~~IvItEiPyqvnka~lie~Iaelv~~kki~gis~vrDEsdr~giRivIelk~~~~~~~vln~Lfk~T~LQ~ 327 (804)
T COG0188 248 IEDTKNGREQIVITEIPYQVNKAKLIEKIAELVKEKKIEGISDIRDESDREGIRIVIELKRDAVAEVVLNNLFKLTDLQT 327 (804)
T ss_pred EEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCHHHH
T ss_conf 99537883389999669701589999999999854873573000010268870799997776417899999987441877
Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 00000245541663000299999999999999999999999999988877899999987406999999861899789878
Q gi|254780182|r 336 LFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415 (910)
Q Consensus 336 sf~~N~~aL~~g~P~~l~Lk~iL~~fi~hR~evi~rRt~~~L~ka~~R~HILeGL~~Al~nIDeVI~iIR~S~d~~eAk~ 415 (910)
T Consensus 328 ~f~~nm~ai~~~~P~~~~L~~iL~~~~~hr~~vi~rR~~~~L~Ka~~R~hileGl~~a~~~iDevI~iIr~s~~~~~a~~ 407 (804)
T COG0188 328 SFNVNMLALVNGRPKVLNLKEILSEFLEHRLEVVTRRTEYELNKAEERLHILEGLLIALLNIDEVIEIIRESKDKPEAKE 407 (804)
T ss_pred HHCCEEEEECCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 50710687317803153799999999999999988999999999999998998899999714788988870898167899
Q ss_pred HHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 77631269788999997402211122234452369999999998789999888799999989999999998875304989
Q gi|254780182|r 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495 (910)
Q Consensus 416 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~eL~~~I~~l~~IL~s~~ 495 (910)
T Consensus 408 ~L~~~--------------------------f~lse~Qa~aIl~mrL~rLt~le~~~i~~E~~~L~~~i~~l~~iL~s~~ 461 (804)
T COG0188 408 ELMAR--------------------------FGLSEKQAEAILDLRLRRLTGLEEEKIEKELKELEKEIADLEKILASEE 461 (804)
T ss_pred HHHHH--------------------------CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 99987--------------------------3896788999986267776404087888899999999999998753889
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEECCCC-CCCCCCCCCCCCEEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999999998999998405688331001343-4530101456781899907970523310000023345652110001464
Q gi|254780182|r 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574 (910)
Q Consensus 496 ~l~~iI~~EL~eik~kygd~RRT~I~~~~~-~i~~EdlI~~E~vvV~lS~~GyIKr~~~~~yr~Q~RggkG~~~~~~ke~ 574 (910)
T Consensus 462 ~~~~~i~~eL~~~~~k~gd~Rrt~i~~~~~~~~~~edli~~e~vvv~ls~~gyikr~~~~~~~~q~-----~~~~~~ke~ 536 (804)
T COG0188 462 RLLDIIKKELLEIKKKFGDERRTEIVEEEEDEIEDEDLIAEEDVVVTLSHKGYIKRVPLKGYEAQR-----VSGLGLKEG 536 (804)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEHHCCCCCCCCCHHHHCCCCCEEEEECCCCEEEECCHHHHHHHH-----HHHCCCCCC
T ss_conf 999999999999998718532000115653223213313355449998165327863456643302-----211132434
Q ss_pred CHHEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEECC
Q ss_conf 10101133237773999954893999820004322444565541245453655620025663012566687179999479
Q gi|254780182|r 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654 (910)
Q Consensus 575 D~v~~~~~~~t~d~LLfFTs~Gkvy~l~v~~IP~~sr~skG~pi~nll~l~~~E~I~ail~~~~~~~~~~~~~Lvl~Tk~ 654 (910)
T Consensus 537 d~~~~~~~~~t~d~ll~ft~~G~~y~~~~~~lp~~~~~~~G~~i~~ll~~~~~E~i~~v~~~~------~~~~l~~~T~~ 610 (804)
T COG0188 537 DFLERLFEANTHDTLLFFTSKGRVYKLKVYELPEGSRRSRGEPIVNLLSLEKGEKITAVLPVN------DDQYLFLATKK 610 (804)
T ss_pred CHHHHEEEECCCCEEEEECCCCCEEEECCEECCCCCCCCCCHHHHHHCCCCCCCEEEEEEECC------CCEEEEEEECC
T ss_conf 033430550466469998278848973130335556666781035424578885479999707------86059999169
Q ss_pred CCEEEECHHHHHHCCCCCEEEEEECCCCEEEEEEECC-CCCEEEEEECCCEEEEEEHHHCCCCCCCCCCCEEEEECCCCC
Q ss_conf 9189842368620477722786615898578889618-982699993698599975876235478665535767528998
Q gi|254780182|r 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733 (910)
Q Consensus 655 G~VKkt~l~ef~~~r~~G~~aikLkegD~Li~v~~~~-~~~~Iil~T~~G~~lrF~~~evr~~~GR~a~GVkgIkL~~~D 733 (910)
T Consensus 611 G~vK~~~l~~f~~~~~~g~~ai~L~~~d~l~~~~~~~~~~~~i~~~t~~G~~~~F~~~~v~~~-gr~a~Gv~~i~l~~~d 689 (804)
T COG0188 611 GYVKKTSLSEFKNIRSKGKIAIKLKEGDELVSVSLTSDGDDDILLVTSNGKALRFPESEVREM-GRGAKGVKGIKLKEGD 689 (804)
T ss_pred CCEEEEEHHHHHCCCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCEEEEEEHHHCCCC-CCCCCCCCEEECCCCC
T ss_conf 947982035531235677068971777630124521578760899914873787403442211-5413686406437657
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCEEEEE
Q ss_conf 69998973366654200000122233333334555444444443332222232001110125686799997599345301
Q gi|254780182|r 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813 (910)
Q Consensus 734 ~Vv~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~IL~vTe~G~GKRt~ 813 (910)
T Consensus 690 ~~~~~~~~~~~~----------------------------------------------------~~~l~~t~~g~~kr~~ 717 (804)
T COG0188 690 KVVSLSVVEDDE----------------------------------------------------AKLLTVTERGYGKRTK 717 (804)
T ss_pred EEEEEEECCCCC----------------------------------------------------EEEEEEECCCCEEECC
T ss_conf 566532014786----------------------------------------------------0589984367200041
Q ss_pred HHHCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEE
Q ss_conf 78848667577414887606777768689999728996499994599899999010554451568738898089987999
Q gi|254780182|r 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893 (910)
Q Consensus 814 ~~eyr~q~RGgkGv~~ik~~~~n~~g~lv~~~~V~~~DeIlliT~~G~iiR~~v~~I~~~gR~a~GV~i~~L~~~D~Vv~ 893 (910)
T Consensus 718 ~~~~~~~~Rg~~G~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~t~~g~~ir~~~~~i~~~~r~t~gv~~~~~~~~~~v~~ 796 (804)
T COG0188 718 ISEYPVTKRGGKGVILIKGTKRN-RGKVVAAITVDEDDEIMLITSRGKLIRTAVSEISITGRNTQGVKLINLDEDEKVVS 796 (804)
T ss_pred HHHCCCCCCCCCCEECCCCCCCC-CCEEEEEECCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCEEEE
T ss_conf 42134246676641245455565-53377641368875389982696389853143231244456627653179973788
Q ss_pred EEEECCC
Q ss_conf 9983566
Q gi|254780182|r 894 VERIRES 900 (910)
Q Consensus 894 va~i~~~ 900 (910)
T Consensus 797 ~~~~~~~ 803 (804)
T COG0188 797 VARVKEE 803 (804)
T ss_pred EEECCCC
T ss_conf 7740578