HHsearch alignment for GI: 254780182 and conserved domain: COG0188

>COG0188 GyrA Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [DNA replication, recombination, and repair].
Probab=100.00  E-value=0  Score=2119.48  Aligned_cols=794  Identities=55%  Similarity=0.893  Sum_probs=775.5

Q ss_pred             EEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCCCHHHHHH
Q ss_conf             66600999998767877799886313754000897367899999998789999981134042556643668870478999
Q gi|254780182|r   16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD   95 (910)
Q Consensus        16 i~~~~~~~~m~~syl~Ya~svI~~RAlPd~rDGlKpv~Rrily~m~~~~~~~~~~~~K~a~ivg~v~gkyHPHGd~siy~   95 (910)
T Consensus         8 i~~v~i~~e~~~syl~YAmsVIv~RALPdVRDGLKPVqRRILYaM~e~gl~~d~~~kKsAriVGdvmGkyHPHGDssiYd   87 (804)
T COG0188           8 IEPIDIEDEMKRSYLDYAMSVIVGRALPDVRDGLKPVQRRILYAMFELGLTPDKKYKKSARIVGDVMGKYHPHGDSSIYD   87 (804)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHH
T ss_conf             51265999999999988799886401775234786089998899997499989970003066775335678887168999


Q ss_pred             HHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEECCCCCCCCH
Q ss_conf             99971220111561314788708877697201357899978999999863076840533068988548503432273211
Q gi|254780182|r   96 ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL  175 (910)
Q Consensus        96 a~v~maq~~~~r~plidg~GnfGs~dgd~~AA~RYte~rl~~~~~~~l~~i~~~tv~~~~n~D~~~~EP~vlP~~~P~lL  175 (910)
T Consensus        88 alVRMAQdfs~RypLVdgqGNFGSiDgD~aAAMRYTEaRLs~ia~elL~di~kdtVdf~~NyDg~~~EP~VLPa~~PnLL  167 (804)
T COG0188          88 ALVRMAQDFSLRYPLVDGQGNFGSIDGDPAAAMRYTEARLSKIAEELLEDIDKDTVDFVPNYDGSEKEPEVLPARFPNLL  167 (804)
T ss_pred             HHHHHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCEEE
T ss_conf             99997104341576231687788999973787778886231989998744465705144079998558740346687067


Q ss_pred             HCCCCCEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEEE
Q ss_conf             01676101013317898547899999988761877688888863458668874434475889999870120389999886
Q gi|254780182|r  176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH  255 (910)
Q Consensus       176 ~nG~~GIAvGmaTnippHNl~Ev~~a~~~~i~~p~~~~~eL~~~i~GPDFPTGG~I~~~~~i~~~y~tGrG~i~iR~k~~  255 (910)
T Consensus       168 vNGssGIAVGmATnIPPHNl~Ev~da~~~li~np~~~~~~lm~~i~GPDFPTgg~I~g~~~I~~aY~tGrG~i~vRa~~~  247 (804)
T COG0188         168 VNGSSGIAVGMATNIPPHNLGEVIDALIALIDNPDATIDELMEIIKGPDFPTGGIIIGRSGIREAYETGRGSIRVRAKAE  247 (804)
T ss_pred             ECCCCCEECCEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCEEECCHHHHHHHCCCCCEEEEEEEEE
T ss_conf             60687410123057799898999999999970999746777310699989986668541456787700784599998999


Q ss_pred             EEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHCCHHC
Q ss_conf             54336784599992464435289999999999871665014458730374655799994798877899999997610110
Q gi|254780182|r  256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS  335 (910)
Q Consensus       256 ie~~~~~k~~ivItEiPY~vnk~~lie~Ia~lv~~~ki~gI~dirDeSdr~giRivielKr~~~~~~vln~Lyk~T~Lq~  335 (910)
T Consensus       248 iE~~~~gr~~IvItEiPyqvnka~lie~Iaelv~~kki~gis~vrDEsdr~giRivIelk~~~~~~~vln~Lfk~T~LQ~  327 (804)
T COG0188         248 IEDTKNGREQIVITEIPYQVNKAKLIEKIAELVKEKKIEGISDIRDESDREGIRIVIELKRDAVAEVVLNNLFKLTDLQT  327 (804)
T ss_pred             EEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCHHHH
T ss_conf             99537883389999669701589999999999854873573000010268870799997776417899999987441877


Q ss_pred             CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             00000245541663000299999999999999999999999999988877899999987406999999861899789878
Q gi|254780182|r  336 LFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR  415 (910)
Q Consensus       336 sf~~N~~aL~~g~P~~l~Lk~iL~~fi~hR~evi~rRt~~~L~ka~~R~HILeGL~~Al~nIDeVI~iIR~S~d~~eAk~  415 (910)
T Consensus       328 ~f~~nm~ai~~~~P~~~~L~~iL~~~~~hr~~vi~rR~~~~L~Ka~~R~hileGl~~a~~~iDevI~iIr~s~~~~~a~~  407 (804)
T COG0188         328 SFNVNMLALVNGRPKVLNLKEILSEFLEHRLEVVTRRTEYELNKAEERLHILEGLLIALLNIDEVIEIIRESKDKPEAKE  407 (804)
T ss_pred             HHCCEEEEECCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf             50710687317803153799999999999999988999999999999998998899999714788988870898167899


Q ss_pred             HHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf             77631269788999997402211122234452369999999998789999888799999989999999998875304989
Q gi|254780182|r  416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS  495 (910)
Q Consensus       416 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~eL~~~I~~l~~IL~s~~  495 (910)
T Consensus       408 ~L~~~--------------------------f~lse~Qa~aIl~mrL~rLt~le~~~i~~E~~~L~~~i~~l~~iL~s~~  461 (804)
T COG0188         408 ELMAR--------------------------FGLSEKQAEAILDLRLRRLTGLEEEKIEKELKELEKEIADLEKILASEE  461 (804)
T ss_pred             HHHHH--------------------------CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf             99987--------------------------3896788999986267776404087888899999999999998753889


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCEEECCCC-CCCCCCCCCCCCEEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             999999998999998405688331001343-4530101456781899907970523310000023345652110001464
Q gi|254780182|r  496 RLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE  574 (910)
Q Consensus       496 ~l~~iI~~EL~eik~kygd~RRT~I~~~~~-~i~~EdlI~~E~vvV~lS~~GyIKr~~~~~yr~Q~RggkG~~~~~~ke~  574 (910)
T Consensus       462 ~~~~~i~~eL~~~~~k~gd~Rrt~i~~~~~~~~~~edli~~e~vvv~ls~~gyikr~~~~~~~~q~-----~~~~~~ke~  536 (804)
T COG0188         462 RLLDIIKKELLEIKKKFGDERRTEIVEEEEDEIEDEDLIAEEDVVVTLSHKGYIKRVPLKGYEAQR-----VSGLGLKEG  536 (804)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEHHCCCCCCCCCHHHHCCCCCEEEEECCCCEEEECCHHHHHHHH-----HHHCCCCCC
T ss_conf             999999999999998718532000115653223213313355449998165327863456643302-----211132434


Q ss_pred             CHHEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEECC
Q ss_conf             10101133237773999954893999820004322444565541245453655620025663012566687179999479
Q gi|254780182|r  575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH  654 (910)
Q Consensus       575 D~v~~~~~~~t~d~LLfFTs~Gkvy~l~v~~IP~~sr~skG~pi~nll~l~~~E~I~ail~~~~~~~~~~~~~Lvl~Tk~  654 (910)
T Consensus       537 d~~~~~~~~~t~d~ll~ft~~G~~y~~~~~~lp~~~~~~~G~~i~~ll~~~~~E~i~~v~~~~------~~~~l~~~T~~  610 (804)
T COG0188         537 DFLERLFEANTHDTLLFFTSKGRVYKLKVYELPEGSRRSRGEPIVNLLSLEKGEKITAVLPVN------DDQYLFLATKK  610 (804)
T ss_pred             CHHHHEEEECCCCEEEEECCCCCEEEECCEECCCCCCCCCCHHHHHHCCCCCCCEEEEEEECC------CCEEEEEEECC
T ss_conf             033430550466469998278848973130335556666781035424578885479999707------86059999169


Q ss_pred             CCEEEECHHHHHHCCCCCEEEEEECCCCEEEEEEECC-CCCEEEEEECCCEEEEEEHHHCCCCCCCCCCCEEEEECCCCC
Q ss_conf             9189842368620477722786615898578889618-982699993698599975876235478665535767528998
Q gi|254780182|r  655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD  733 (910)
Q Consensus       655 G~VKkt~l~ef~~~r~~G~~aikLkegD~Li~v~~~~-~~~~Iil~T~~G~~lrF~~~evr~~~GR~a~GVkgIkL~~~D  733 (910)
T Consensus       611 G~vK~~~l~~f~~~~~~g~~ai~L~~~d~l~~~~~~~~~~~~i~~~t~~G~~~~F~~~~v~~~-gr~a~Gv~~i~l~~~d  689 (804)
T COG0188         611 GYVKKTSLSEFKNIRSKGKIAIKLKEGDELVSVSLTSDGDDDILLVTSNGKALRFPESEVREM-GRGAKGVKGIKLKEGD  689 (804)
T ss_pred             CCEEEEEHHHHHCCCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCEEEEEEHHHCCCC-CCCCCCCCEEECCCCC
T ss_conf             947982035531235677068971777630124521578760899914873787403442211-5413686406437657


Q ss_pred             EEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCEEEEE
Q ss_conf             69998973366654200000122233333334555444444443332222232001110125686799997599345301
Q gi|254780182|r  734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS  813 (910)
Q Consensus       734 ~Vv~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~IL~vTe~G~GKRt~  813 (910)
T Consensus       690 ~~~~~~~~~~~~----------------------------------------------------~~~l~~t~~g~~kr~~  717 (804)
T COG0188         690 KVVSLSVVEDDE----------------------------------------------------AKLLTVTERGYGKRTK  717 (804)
T ss_pred             EEEEEEECCCCC----------------------------------------------------EEEEEEECCCCEEECC
T ss_conf             566532014786----------------------------------------------------0589984367200041


Q ss_pred             HHHCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEE
Q ss_conf             78848667577414887606777768689999728996499994599899999010554451568738898089987999
Q gi|254780182|r  814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS  893 (910)
Q Consensus       814 ~~eyr~q~RGgkGv~~ik~~~~n~~g~lv~~~~V~~~DeIlliT~~G~iiR~~v~~I~~~gR~a~GV~i~~L~~~D~Vv~  893 (910)
T Consensus       718 ~~~~~~~~Rg~~G~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~t~~g~~ir~~~~~i~~~~r~t~gv~~~~~~~~~~v~~  796 (804)
T COG0188         718 ISEYPVTKRGGKGVILIKGTKRN-RGKVVAAITVDEDDEIMLITSRGKLIRTAVSEISITGRNTQGVKLINLDEDEKVVS  796 (804)
T ss_pred             HHHCCCCCCCCCCEECCCCCCCC-CCEEEEEECCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCEEEE
T ss_conf             42134246676641245455565-53377641368875389982696389853143231244456627653179973788


Q ss_pred             EEEECCC
Q ss_conf             9983566
Q gi|254780182|r  894 VERIRES  900 (910)
Q Consensus       894 va~i~~~  900 (910)
T Consensus       797 ~~~~~~~  803 (804)
T COG0188         797 VARVKEE  803 (804)
T ss_pred             EEECCCC
T ss_conf             7740578