HHsearch alignment for GI: 254780182 and conserved domain: PRK09630
>PRK09630 DNA topoisomerase IV subunit A; Provisional.
Probab=97.56 E-value=0.0059 Score=45.50 Aligned_cols=112 Identities=12% Similarity=-0.028 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHH
Q ss_conf 999999999999999999999999888778999999874-------0699999986189978987877631269788999
Q gi|254780182|r 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVA-------NLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429 (910)
Q Consensus 357 iL~~fi~hR~evi~rRt~~~L~ka~~R~HILeGL~~Al~-------nIDeVI~iIR~S~d~~eAk~~L~~~~~~~~~~~~ 429 (910)
T Consensus 308 ~l~eiL~~~~~~~~~~lrr~l~~~~~~~~r-~~~~k~Le~l~I~~~~~d~I~eiI~~i~~~~~~ed~~~~l--------- 377 (479)
T PRK09630 308 SISEILKLHTEALQGYLKKELLILQDSLTR-EHYHKTLEYIFIKHKLYDTVREMLSKRKTKPSASDLHNAV--------- 377 (479)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH---------
T ss_conf 689999999998755434668999899999-9999888899998778999999999885389899999999---------
Q ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q ss_conf 99740221112223445236999999999878999988879999-998999999999887530
Q gi|254780182|r 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI-RNELNSLGIEIKECLDIL 491 (910)
Q Consensus 430 ~~~~~~~~~~~~~~~~~f~lSe~QA~AILdMrL~rLt~LE~~kl-~~E~~eL~~~I~~l~~IL 491 (910)
T Consensus 378 -------------~~~~~~~~~~~~~~i~~q~~~~L~~l~l~kL~~Le~~k~~~El~~l~~~i 427 (479)
T PRK09630 378 -------------LHALEPFLHTLPTAPDKQATSQLASLTIKKILCFNENAYTKELAAIEKKQ 427 (479)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -------------98765667877543389999999998999875133999999999999999