HHsearch alignment for GI: 254780182 and conserved domain: PRK12758
>PRK12758 DNA topoisomerase IV subunit A; Provisional.
Probab=100.00 E-value=0 Score=887.31 Aligned_cols=695 Identities=25% Similarity=0.372 Sum_probs=525.5
Q ss_pred CCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCC
Q ss_conf 87643235666009999987678777998863137540008973678999999987899999811340425566436688
Q gi|254780182|r 8 SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87 (910)
Q Consensus 8 ~~~~~~~~i~~~~~~~~m~~syl~Ya~svI~~RAlPd~rDGlKpv~Rrily~m~~~~~~~~~~~~K~a~ivg~v~gkyHP 87 (910)
T Consensus 14 ~~~~~~~~~~~--~~gmy~~wfldYasyvil~RAvp~i~DGlKPvqRril~sm~~~~---dgr~~KvAnivG~tm-~yhP 87 (879)
T PRK12758 14 PENEPIHDTTH--VGGMYQNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRLD---DGRYNKVANIVGHTM-QYHP 87 (879)
T ss_pred CCCCCCHHEEE--CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH---CCCCCEEEEECCCCC-CCCC
T ss_conf 76664010245--01347888887768653352056400278538999999998610---776302320102320-2488
Q ss_pred CCHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEE
Q ss_conf 704789999997122011156131478870887-7697201357899978999999863076840533068988548503
Q gi|254780182|r 88 HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166 (910)
Q Consensus 88 HGd~siy~a~v~maq~~~~r~plidg~GnfGs~-dgd~~AA~RYte~rl~~~~~~~l~~i~~~tv~~~~n~D~~~~EP~v 166 (910)
T Consensus 88 HGdasi~dalv~~~q----k~~lid~qGN~Gni~tgd~aaA~RYiE~rls~fa~ev~--fn~~~t~~~~sYDgr~kEP~~ 161 (879)
T PRK12758 88 HGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSKFALEVL--FNPKTTEWQLSYDGRKKEPVT 161 (879)
T ss_pred CCCCHHHHHHHHHHC----CCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHE--ECCCCCEEEECCCCCCCCCCC
T ss_conf 874238999998624----33368647776676878722314467564207779870--387755345456876578642
Q ss_pred CCCCCCCCHHCCCCCEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCC-
Q ss_conf 4322732110167610101331789854789999998876187768888886345866887443447588999987012-
Q gi|254780182|r 167 LCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR- 245 (910)
Q Consensus 167 lP~~~P~lL~nG~~GIAvGmaTnippHNl~Ev~~a~~~~i~~p~~~~~eL~~~i~GPDFPTGG~I~~~~~i~~~y~tGr- 245 (910)
T Consensus 162 lP~kfPllL~~g~eGIAVGlstkilphNf~El~~a~i~~l~~~~~~l~--------PDF~tgG~~d-----~s~YndG~r 228 (879)
T PRK12758 162 LPVKFPLLLAQGVEGIAVGLSSKILPHNFNELIDASIAYLRGEEFKLY--------PDFQTGGSID-----VSNYNDGER 228 (879)
T ss_pred CCCCCHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEC--------CCCCCCCEEC-----HHHHHCCCC
T ss_conf 552116777616762685001464887889999999999759985488--------7898875405-----645104445
Q ss_pred -CEEEEEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEEEECCCCCHHHHH
Q ss_conf -0389999886543367845999924644352899999999998716650144587303746557999947988778999
Q gi|254780182|r 246 -GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 (910)
Q Consensus 246 -G~i~iR~k~~ie~~~~~k~~ivItEiPY~vnk~~lie~Ia~lv~~~ki~gI~dirDeSdr~giRivielKr~~~~~~vl 324 (910)
T Consensus 229 gG~v~vRaki~~~d----~~tl~I~eiP~g~tt~sLi~SI~kAn~kGKIK-Ikki~DnTa~~-VEI~i~L~~Gvs~dkti 302 (879)
T PRK12758 229 GGRVKVRAKINKLD----NKTLVITEIPYGTTTSSLIDSILKANDKGKIK-IKKVDDNTAAD-VEILVHLAPGVSSDKTI 302 (879)
T ss_pred CCEEEEEEEEEEEC----CCEEEEEECCCCCCHHHHHHHHHHHHHCCCCC-EEEECCCCCCC-EEEEEECCCCCCHHHHH
T ss_conf 85489999999805----96699985499875799999999998759711-46632467774-06999838999878989
Q ss_pred HHHHHHCCHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Q ss_conf 9999761011000000245541663000299999999999999999999999999988877899999987406---9999
Q gi|254780182|r 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL---DEVV 401 (910)
Q Consensus 325 n~Lyk~T~Lq~sf~~N~~aL~~g~P~~l~Lk~iL~~fi~hR~evi~rRt~~~L~ka~~R~HILeGL~~Al~nI---DeVI 401 (910)
T Consensus 303 daLYAFTdCEvSISPn~cVI~dnkP~fl~VseiLk~std~t~~LLk~ELei~l~eLeekwH~~-----SLErIFIEnRIY 377 (879)
T PRK12758 303 DALYAFTDCEVSISPNCCVIDDDKPHFLGVSEVLRISTDRTLDLLKQELEIQLEELLEQLHFA-----SLEKIFIEERIY 377 (879)
T ss_pred HHHHHHCCCEECCCCCEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
T ss_conf 987630356220587649998994438428999999999999999999998899999999999-----899999775651
Q ss_pred H--HHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9--98618997898787763126978899999740221112223445236999999999878999988879999998999
Q gi|254780182|r 402 R--IIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479 (910)
Q Consensus 402 ~--iIR~S~d~~eAk~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~e 479 (910)
T Consensus 378 rd~~IEe~~t~E~Vi~~I~~g---------L~Pf~~~L~--------ReVt~eDI~rLtEIkIkRISkFDidKa~e~I~~ 440 (879)
T PRK12758 378 KDKEFEESETWEDALLHIDDR---------LEPFKKQFI--------REVTEDDILRLTEIKMKRILKFNSDKAEELIAR 440 (879)
T ss_pred CCCHHCCCCCHHHHHHHHHHH---------HHHHHHHHC--------CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 440003556899999999999---------999888633--------788889999986313777554187889999999
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC--CCCCEEECCCCCCCC-CCCCCCCCEEEEEECCCEECCCCCCCC
Q ss_conf 99999988753049899999999989999984056--883310013434530-101456781899907970523310000
Q gi|254780182|r 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMED-EDCIVREDMVVTVSHLGYVKRVPLSVY 556 (910)
Q Consensus 480 L~~~I~~l~~IL~s~~~l~~iI~~EL~eik~kygd--~RRT~I~~~~~~i~~-EdlI~~E~vvV~lS~~GyIKr~~~~~y 556 (910)
T Consensus 441 le~~I~eVk~nL~n---lt~YaI~yf~~LkkKYGkg~~RKTEI~~Fd~-I~A~kVa~~N~--------KLYvNRe----- 503 (879)
T PRK12758 441 LEEDIAEVEHHLEH---IIDYTIAWFTMLKEKYGKGFPRRTELRNFDT-IEATKVVEANE--------KLYINRE----- 503 (879)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCCCCCCCCEEEECCC-EEHHHHHHHHC--------EEEEECC-----
T ss_conf 99999999988887---8999999999999986699976403410031-52777735317--------7998245-----
Q ss_pred CCCCCCCCCCCCCCCCCCCHHEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCEEE--EECCCCCCEEEEE
Q ss_conf 02334565211000146410101133237773999954893999820004322444565541245--4536556200256
Q gi|254780182|r 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI--LSLNQGERITTIM 634 (910)
Q Consensus 557 r~Q~RggkG~~~~~~ke~D~v~~~~~~~t~d~LLfFTs~Gkvy~l~v~~IP~~sr~skG~pi~nl--l~l~~~E~I~ail 634 (910)
T Consensus 504 -------eGFiGt~lKkdE---fv~dCSdiDDIIvF~kDG~~~VtKV~d-----K~FVGKdIihv~vfkK~D~rtiYN~I 568 (879)
T PRK12758 504 -------EGFIGTGLKKDE---FVADCSDIDDVIVFYRDGKYMVTKVAD-----KKFVGKDIIYVAVFKKNDKRTIYNVI 568 (879)
T ss_pred -------CCEECCCCCCCC---EEEECCCCCEEEEEECCCCEEEEECCC-----CEEECCCCEEEEEEECCCCCEEEEEE
T ss_conf -------661101324774---443035712289992388589998167-----44533675799975058873288999
Q ss_pred EECCCCCCCCCCEEEEEECCCCEEEECHHHHHHCCCCCEEEE-EECCCCEEEEEEE-CCCCCEEEEEE----CCCEEEEE
Q ss_conf 630125666871799994799189842368620477722786-6158985788896-18982699993----69859997
Q gi|254780182|r 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM-KLDSRDEILSVET-CTQENDILLTT----KLGQCVRF 708 (910)
Q Consensus 635 ~~~~~~~~~~~~~Lvl~Tk~G~VKkt~l~ef~~~r~~G~~ai-kLkegD~Li~v~~-~~~~~~Iil~T----~~G~~lrF 708 (910)
T Consensus 569 -YrDGk-----------~g~syiKRF~VtgvtR---Dk~Y~lt~g~~gSkvlYfsaNpNGEAE~V~v~Lr~~~~~kkl~~ 633 (879)
T PRK12758 569 -YRDGK-----------SGPSYIKRFNVTGVTR---DKEYDLTQGTPGSRVLYFSANPNGEAEVVTVTLKPNPRIRKLVF 633 (879)
T ss_pred -EECCC-----------CCCEEEEEEECCCEEE---CCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCCCCCEEE
T ss_conf -97388-----------8856557631241431---34024667999988999951899862689999645855341564
Q ss_pred E--HHHCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5--87623547866553576752899869998973366654200000122233333334555444444443332222232
Q gi|254780182|r 709 P--ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786 (910)
Q Consensus 709 ~--~~evr~~~GR~a~GVkgIkL~~~D~Vv~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (910)
T Consensus 634 d~DFsdi~-IKGR~skGNivTK~~V-~kI-~----------------------lKe~G~STL~~RKIWFD~~V~RLN~d~ 688 (879)
T PRK12758 634 EKDFSEIA-IKGRQSQGNILTKYPV-HKI-E----------------------LKQKGGSTLGGRKVWFDRDVLRLNYDG 688 (879)
T ss_pred ECCHHHHH-CCCCCCCCEEEECCCE-EEE-E----------------------EECCCCCCCCCEEEEECCCCCCCCCCC
T ss_conf 13677710-0144556516750320-267-4----------------------101475555771576346423015466
Q ss_pred CHHHHCCCCCCCEEEEEECCCCEEEEEHHHCCCCCCCCCCEEEE
Q ss_conf 00111012568679999759934530178848667577414887
Q gi|254780182|r 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830 (910)
Q Consensus 787 ~e~~~~~~~~~~~IL~vTe~G~GKRt~~~eyr~q~RGgkGv~~i 830 (910)
T Consensus 689 RG~lLGeF~~dD~iLvi~~~G~~~~~~---~dls~hfd~d~i~l 729 (879)
T PRK12758 689 RGEYLGEFQSDDRILVILQNGEFYTTN---FELTNHYDPNMIVI 729 (879)
T ss_pred CCCEEEECCCCCEEEEEECCCEEEECC---CCHHCCCCCCCEEE
T ss_conf 653650027886699995488189815---30312588773699