HHsearch alignment for GI: 254780182 and conserved domain: PRK13979
>PRK13979 DNA topoisomerase IV subunit A; Provisional,Validated.
Probab=100.00 E-value=0 Score=2378.21 Aligned_cols=855 Identities=36% Similarity=0.551 Sum_probs=779.8
Q ss_pred CCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCC
Q ss_conf 76432356660099999876787779988631375400089736789999999878999998113404255664366887
Q gi|254780182|r 9 DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88 (910)
Q Consensus 9 ~~~~~~~i~~~~~~~~m~~syl~Ya~svI~~RAlPd~rDGlKpv~Rrily~m~~~~~~~~~~~~K~a~ivg~v~gkyHPH 88 (910)
T Consensus 7 ~~p~~~~i~~~~i~~em~~syl~YamsVI~~RAlPDvRDGLKPVhRRiLy~M~~lg~~~~~~~~KsArivGdv~GkyHPH 86 (959)
T PRK13979 7 VIPKDNNIIKFPLEEAMPENYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAFPDKPYYKSARIVGDILGKYHPH 86 (959)
T ss_pred CCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCC
T ss_conf 78986875561489999988998889987750077644688518999999998738999999841235511026477898
Q ss_pred CHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEECC
Q ss_conf 04789999997122011156131478870887769720135789997899999986307684053306898854850343
Q gi|254780182|r 89 GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168 (910)
Q Consensus 89 Gd~siy~a~v~maq~~~~r~plidg~GnfGs~dgd~~AA~RYte~rl~~~~~~~l~~i~~~tv~~~~n~D~~~~EP~vlP 168 (910)
T Consensus 87 GD~avYdalVrmaQ~fs~r~pLidgqGNfGSidgD~~AAmRYTEarl~~~a~~ll~di~k~tVdf~~NyD~s~~EP~VLP 166 (959)
T PRK13979 87 GDSSVYDAMVILAQNFTTRMPLIDGHGNWGSIDGDSAAAMRYTEARLTPIAMEMLRDIDKDVVDMVDNYSDSEKEPKVLP 166 (959)
T ss_pred CCHHHHHHHHHHHCCHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 70479999999700013127606067867899998103430688888999999983304277476148898876865135
Q ss_pred CCCCCCHHCCCCCEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEE
Q ss_conf 22732110167610101331789854789999998876187768888886345866887443447588999987012038
Q gi|254780182|r 169 ARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248 (910)
Q Consensus 169 ~~~P~lL~nG~~GIAvGmaTnippHNl~Ev~~a~~~~i~~p~~~~~eL~~~i~GPDFPTGG~I~~~~~i~~~y~tGrG~i 248 (910)
T Consensus 167 a~~PnLLvNGs~GIAVGMATnIPpHNL~Evida~~a~i~np~~t~~eLm~~i~GPDFPTGGiI~g~~gi~~aY~TGrG~i 246 (959)
T PRK13979 167 ARYPNLLVNGAFGIAVGLATNIPPHNLKEVIDGTLAYIDNNEITTKELMNYIKGPDLPTGGILIGKKSLLSAYETGEGKV 246 (959)
T ss_pred CCCCHHHHCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHCCCEE
T ss_conf 77743221377401141225879978899999999997089988999982187998899848988787999998489839
Q ss_pred EEEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCC----CCHHHHHHHHCCCCCEEEEEEECCCCCHH---
Q ss_conf 99998865433678459999246443528999999999987166----50144587303746557999947988778---
Q gi|254780182|r 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDIADLRDESDRQGYRVVIELKRGASAD--- 321 (910)
Q Consensus 249 ~iR~k~~ie~~~~~k~~ivItEiPY~vnk~~lie~Ia~lv~~~k----i~gI~dirDeSdr~giRivielKr~~~~~--- 321 (910)
T Consensus 247 ~iRak~~iE~~~~gr~~IiItEiPY~vnka~lie~Iaelv~~kk~~k~i~gIsdiRDESDr~GiRIVIelKr~a~~~v~e 326 (959)
T PRK13979 247 TLRAKTTIEKLENGRLGIVITEFPYRRNKAKLLQTISEMTADKKHSKALENISDIRDESDRNGIRAVIEFKKSADEDVAE 326 (959)
T ss_pred EEEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHH
T ss_conf 99988899961788448999966875778999999999997131336688600420136778638999976889757699
Q ss_pred HHHHHHHHHCCHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999997610110000002455416630002999999999999999999999999999888778999999874069999
Q gi|254780182|r 322 VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVV 401 (910)
Q Consensus 322 ~vln~Lyk~T~Lq~sf~~N~~aL~~g~P~~l~Lk~iL~~fi~hR~evi~rRt~~~L~ka~~R~HILeGL~~Al~nIDeVI 401 (910)
T Consensus 327 ~vLn~Lyk~T~LQ~sf~vNmlaL~~g~P~~l~Lk~iL~~fl~hR~eVI~RRt~~~L~ka~~R~HILeGL~iAl~nIDevI 406 (959)
T PRK13979 327 KVLKYLYKKTDLQCNISFNMVALADGKPETMGLKAIIKHYVEHQKEVVTRRTKKELEIAEKRFHIVEGFIKAIGIMDEII 406 (959)
T ss_pred HHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf 99999997498836774589973399134977899999999999999999999999889989999998999997899999
Q ss_pred HHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99861899789878776312697889999974022111222344523699999999987899998887999999899999
Q gi|254780182|r 402 RIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481 (910)
Q Consensus 402 ~iIR~S~d~~eAk~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~eL~ 481 (910)
T Consensus 407 ~iIR~S~~~~~Ak~~L~~~--------------------------f~lse~QA~AILdmrL~rLT~LE~~ki~~E~~eL~ 460 (959)
T PRK13979 407 KTIRASKSKKDASENLIEK--------------------------FGFTDEQAEAILELMLYRLTGLEIKVFEKEYKELE 460 (959)
T ss_pred HHHHCCCCHHHHHHHHHHH--------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998189837999989876--------------------------19999999999998999987889999999999999
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCC--CCCCCCCCCCCCCEEEEEECCCEECCCCCCCCCCC
Q ss_conf 9999887530498999999999899999840568833100134--34530101456781899907970523310000023
Q gi|254780182|r 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559 (910)
Q Consensus 482 ~~I~~l~~IL~s~~~l~~iI~~EL~eik~kygd~RRT~I~~~~--~~i~~EdlI~~E~vvV~lS~~GyIKr~~~~~yr~Q 559 (910)
T Consensus 461 ~~I~~l~~IL~s~~~l~~iIk~EL~eik~kygd~RRT~Ii~~~~~~~~~~EDLI~~EdvVVtlS~~GYIKR~pl~~Y--- 537 (959)
T PRK13979 461 KLIKKLEKILSSEKELLKVIKKELKEVKEKYGDERRTSIIEDDEKAKIDIEELIVVEDVVITLSNEGFIKRIPLKSY--- 537 (959)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHCCCCCEEEEEECCCEEEECCHHHH---
T ss_conf 99999999967999999999999999999839987426665632033657673456655999806964750458881---
Q ss_pred CCCCCCCCCCCCCCCCHHEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCEEEEEC--CCCCCEEEEEEEC
Q ss_conf 34565211000146410101133237773999954893999820004322444565541245453--6556200256630
Q gi|254780182|r 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL--NQGERITTIMPFP 637 (910)
Q Consensus 560 ~RggkG~~~~~~ke~D~v~~~~~~~t~d~LLfFTs~Gkvy~l~v~~IP~~sr~skG~pi~nll~l--~~~E~I~ail~~~ 637 (910)
T Consensus 538 ~RgGkG~~g~~~ke~D~v~~l~~a~THd~lLfFTn~GkvY~lKvyeIPe~sr~aKG~~i~Nll~~l~l~~E~I~~il~v~ 617 (959)
T PRK13979 538 NRSNSNVEDIEYREGDFNKFLIQSNTKDTLLIFTDKGNMYQIKGINIPEFKWKEKGERLDEIIKTIDLEEEKIIEAYSIE 617 (959)
T ss_pred CCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEEEECCCCCCCCCCCCHHHHCCCCCCCCCEEEEEEECC
T ss_conf 36789977875556651026899528963999957985999870566777700389573441055788984589977412
Q ss_pred CCCCCCCCCEEEEEECCCCEEEECHHHHHHCCCCCEEEEEECCCCEEEEEEECCCCCE---EEEEECCCEEEEEEHHHCC
Q ss_conf 1256668717999947991898423686204777227866158985788896189826---9999369859997587623
Q gi|254780182|r 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRFPISAIR 714 (910)
Q Consensus 638 ~~~~~~~~~~Lvl~Tk~G~VKkt~l~ef~~~r~~G~~aikLkegD~Li~v~~~~~~~~---Iil~T~~G~~lrF~~~evr 714 (910)
T Consensus 618 ~f~---~~~~lvfaTk~G~VKKt~L~~f-~~~~sgiiAIkL~egDeLI~V~l~~~~~~~~~i~l~T~~G~~irf~e~~vR 693 (959)
T PRK13979 618 DFT---PQKDFIFITDSGGIKKTSLDKF-NTNYSKLMALKLKKGEELIKVKLVDRTREEKFLKIKTKKGLSFTVEEPELE 693 (959)
T ss_pred CCC---CCCEEEEEECCCEEECCCHHHC-CCCCCCCEEEECCCCCEEEEEEEECCCCCCEEEEEECCCCEEEECCCHHCC
T ss_conf 267---7754999928986883738982-855678366666999879878973588875079996589659971420224
Q ss_pred CCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCC-------CCCCC--C---------CCC---CCCCCCCCCCCCC
Q ss_conf 5478665535767528998699989733666542000-------00122--2---------333---3333455544444
Q gi|254780182|r 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER-------ICYMK--H---------MSA---QRRLISGDTEEIT 773 (910)
Q Consensus 715 ~~~GR~a~GVkgIkL~~~D~Vv~~~vi~~~~~~~~~~-------~~~~~--~---------~~~---~~~~~~~~~~~~~ 773 (910)
T Consensus 694 ~m-GR~a~GVrgi~L~~~D~Vvsm~i~~~~e~~~~~~~i~~~g~i~~~~~~~~~~~~~~~~~~~~~ili~~~~G~~~~~~ 772 (959)
T PRK13979 694 PV-DRNILGYQLFNLSPNDSIKKVDFCDNYEYKEFYININKKGIIKISDLKKNKSHISLKTNSSKNLLLFSDKGKVYKIP 772 (959)
T ss_pred CC-CCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCEEECC
T ss_conf 57-87666752143399998986102244420000023342002332210011111111356631135432577233032
Q ss_pred -----CCCCC----------CCCCCCCCCHHHHCCCCCCCEEEEEECCCCEEEEEHHHCCCCCCCCCCEEEEECCCCCCC
Q ss_conf -----44433----------322222320011101256867999975993453017884866757741488760677776
Q gi|254780182|r 774 -----SLKND----------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838 (910)
Q Consensus 774 -----~~~~~----------~~~~~~~~~e~~~~~~~~~~~IL~vTe~G~GKRt~~~eyr~q~RGgkGv~~ik~~~~n~~ 838 (910)
T Consensus 773 ~~~~~~~~~~g~~i~~~~~~~~~~e~vi~~~~~~~~~e~~~il~vTe~G~GKRT~~~eyr~~g~~~~~~k~~-----~~~ 847 (959)
T PRK13979 773 AFMLQNIEESGINISALTGDFEKKESIINAISIFEFEEDLSIYFFSKKGLVKKTLLSEFKGEGNSTQVYKFK-----HKE 847 (959)
T ss_pred HHHCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEEEE-----ECC
T ss_conf 432023355564502222121022302466520357776159999358974666567733467864899988-----448
Q ss_pred CCEEEE-EECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCC
Q ss_conf 868999-9728996499994599899999010554451568738898089987999998356655
Q gi|254780182|r 839 GALVAV-FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902 (910)
Q Consensus 839 g~lv~~-~~V~~~DeIlliT~~G~iiR~~v~~I~~~gR~a~GV~i~~L~~~D~Vv~va~i~~~e~ 902 (910)
T Consensus 848 ~~~v~~~~~~~~~d~imliT~~G~~IR~~v~~I~~~GR~tqGV~li~L~~~dkVV~~~~i~~~~~ 912 (959)
T PRK13979 848 DELVSVDINEHEQKNILIITKKGMAIRFKSEAVNPMGKIASGVTGISLKDEDKVIFGSIIDENDT 912 (959)
T ss_pred CCEEEEEEECCCCCEEEEEECCCEEEEEEHHHCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCC
T ss_conf 97899997048996389990798799987243470260368806897389987999999747777