HHsearch alignment for GI: 254780182 and conserved domain: PTZ00108
>PTZ00108 DNA topoisomerase II; Provisional.
Probab=100.00 E-value=2.8e-45 Score=423.59 Aligned_cols=468 Identities=21% Similarity=0.333 Sum_probs=349.1
Q ss_pred CCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHH--CCCCCCC
Q ss_conf 32356660099999876787779988631375400089736789999999878999998113404255664--3668870
Q gi|254780182|r 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHG 89 (910)
Q Consensus 12 ~~~~i~~~~~~~~m~~syl~Ya~svI~~RAlPd~rDGlKpv~Rrily~m~~~~~~~~~~~~K~a~ivg~v~--gkyHPHG 89 (910)
T Consensus 721 ld~~~~~i~~~dFinkELi~FS~~D-~~RSIPs~~DGlKp~QRKvl~~~fkrn~---~~eiKVaQlaGyVse~saYH-HG 795 (1506)
T PTZ00108 721 VDHKEKDLSYYDFVNKELIYYSRYD-TERSIPNIMDGWKPGQRKVLYGCFKRNL---KNECKVAQLVGYIAEHSAYH-HG 795 (1506)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCHHH-HHHHCCHHHCCCCHHHHHHHHHHHHHCC---CCCEEHHHHHHHHHHHCCCC-CC
T ss_conf 3566785438774437888642887-6512411330577124424498786347---76223215088987630467-63
Q ss_pred HHHHHHHHHHHCCCH--HCCCCCCCCCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCE
Q ss_conf 478999999712201--1156131478870887--769720135789997899999986307684053306898854850
Q gi|254780182|r 90 NAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165 (910)
Q Consensus 90 d~siy~a~v~maq~~--~~r~plidg~GnfGs~--dgd~~AA~RYte~rl~~~~~~~l~~i~~~tv~~~~n~D~~~~EP~ 165 (910)
T Consensus 796 E~SL~~tIv~mAQ~fvGsNNinlL~P~GqFGtR~~GGkDaas~RYIfT~l~~~~r~iF~~~Dd~lL~y~-~ddg~~iEP~ 874 (1506)
T PTZ00108 796 ESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDASAARYIFTKLASSTRSIFNEYDDPILKYL-NEEGQKIEPQ 874 (1506)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHCCCCCHHHHHCC-CCCCCCCCCC
T ss_conf 899999999998753565663104557875254558875556025766315888853893302255020-3689631543
Q ss_pred -ECCCCCCCCHHCCCCCEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf -3432273211016761010133178985478999999887618776888888634586688744344758899998701
Q gi|254780182|r 166 -VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244 (910)
Q Consensus 166 -vlP~~~P~lL~nG~~GIAvGmaTnippHNl~Ev~~a~~~~i~~p~~~~~eL~~~i~GPDFPTGG~I~~~~~i~~~y~tG 244 (910)
T Consensus 875 ~Y~Pi-iPmvLvNG~~GIGTGwSt~ip~ynp~dii~ni~r~l~ge~~~--~m~Pwy~g--f-~G~i----------~~~~ 938 (1506)
T PTZ00108 875 YYIPV-IPTILVNGCEGIGTGYSSFIPNYNYKDIIDNIKRYINKEPLI--PMIPWYKD--F-KGRI----------ESNG 938 (1506)
T ss_pred EECCC-CCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC--CCCCCCCC--C-CCEE----------EECC
T ss_conf 02055-667873377620266347789999999999999985699886--27755379--6-2169----------9868
Q ss_pred CCEEEEEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEEEECCCCCHHHHH
Q ss_conf 20389999886543367845999924644352899999999998716650144587303746557999947988778999
Q gi|254780182|r 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324 (910)
Q Consensus 245 rG~i~iR~k~~ie~~~~~k~~ivItEiPY~vnk~~lie~Ia~lv~~~ki~gI~dirDeSdr~giRivielKr~~~~~~vl 324 (910)
T Consensus 939 ~~~y~~~G~~~~~----~~~t~~ItELPi~~WT~~yKe~le~~~~~~~~~~i~d~~e~~t~~~V~F~i~~~~~~~~~~~~ 1014 (1506)
T PTZ00108 939 KTGYETIGIIHKI----DDDTLEINELPIKKWTQDYKEFLEELLTDEKHQLILDYIDNSSHEDICFTIKMDPAKLKKAEE 1014 (1506)
T ss_pred CCEEEEEEEEEEE----CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCEEEEEEEECHHHHHHHHH
T ss_conf 9718998799995----798799985898762699999999875046777400004317997589999958899899876
Q ss_pred HHHHHHCCHHCCCCC-EEEEEE-CCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q ss_conf 999976101100000-024554-166-300029999999999999999999999999998887789999998740-6999
Q gi|254780182|r 325 NQLYRYTSLQSLFSV-NMVALN-GYK-PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN-LDEV 400 (910)
Q Consensus 325 n~Lyk~T~Lq~sf~~-N~~aL~-~g~-P~~l~Lk~iL~~fi~hR~evi~rRt~~~L~ka~~R~HILeGL~~Al~n-IDeV 400 (910)
T Consensus 1015 ~gl~k~fKL~~~i~t~Nm~~Fd~~g~i~kY~~~~~Il~eF~~~Rl~~Y~kRK~~l~~~l~~~~~~l~nqaRFI~~vi~~- 1093 (1506)
T PTZ00108 1015 EGLEKVFKLKSTLTTTNMTLFDPNLKLQRYSTELDILKDFCFHRLKAYENRKSYLISKLEKEKKIISNKSKFILAIVNN- 1093 (1506)
T ss_pred HCHHHHHCCCCEEEECCEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-
T ss_conf 0666651123134205268988999966459999999999999999999999999999999999864255656640067-
Q ss_pred HHHHHHCCCHHHHHHHHHHHCCCHHH-HHHHH-HHC-------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99986189978987877631269788-99999-740-------2211122234452369999999998789999888799
Q gi|254780182|r 401 VRIIRFSPNPETARRELMQRSWNASD-IKDLI-DLI-------DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471 (910)
Q Consensus 401 I~iIR~S~d~~eAk~~L~~~~~~~~~-~~~~~-~~~-------~~~~~~~~~~~~f~lSe~QA~AILdMrL~rLt~LE~~ 471 (910)
T Consensus 1094 -~l~v~nkkk~~li~eL~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydYLL~M~iwsLT~Er~~ 1172 (1506)
T PTZ00108 1094 -ELIVNKKKKKVLVEELYRKGYDPYKDINKIKKEEIFEQELLDAADNPEDNEEIIAGISVKDYDYLLSMPIFSLTLEKVE 1172 (1506)
T ss_pred -EEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHCCCCCCCCCHHHCCCCCCCCCHHHHCCCHHHCCHHHHH
T ss_conf -5899357689999999974999774112433301000221012235544201014677678436638812320099999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 99998999999999887530498999999999899999840
Q gi|254780182|r 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512 (910)
Q Consensus 472 kl~~E~~eL~~~I~~l~~IL~s~~~l~~iI~~EL~eik~ky 512 (910)
T Consensus 1173 ~L~~~~~~k~~El~~L~~~--s~~dlW~~---DLd~fee~~ 1208 (1506)
T PTZ00108 1173 DLLAQHKEKEKELEILKNI--TVETMWLK---DIEKVEEAI 1208 (1506)
T ss_pred HHHHHHHHHHHHHHHHHCC--CHHHHHHH---HHHHHHHHH
T ss_conf 9999999999999999768--98999999---999999999