HHsearch alignment for GI: 254780182 and conserved domain: cd00187

>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=100.00  E-value=0  Score=1148.96  Aligned_cols=443  Identities=53%  Similarity=0.847  Sum_probs=432.3

Q ss_pred             HHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHCCCCCCCCCCCCC
Q ss_conf             31375400089736789999999878999998113404255664366887047899999971220111561314788708
Q gi|254780182|r   39 GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG  118 (910)
Q Consensus        39 ~RAlPd~rDGlKpv~Rrily~m~~~~~~~~~~~~K~a~ivg~v~gkyHPHGd~siy~a~v~maq~~~~r~plidg~GnfG  118 (910)
T Consensus         2 ~RaiP~~~DGlKP~qRkiL~~~~~~~l~~~~~~~Kva~l~G~v~~~~~~HGe~sl~~aiv~mAQ~fsnn~~Ll~~~GnFG   81 (445)
T cd00187           2 GRALPDVRDGLKPVQRRILYAMFKRGLTPDKPEKKVARLVGDVAGKYHPHGDSSLYDTIVRMAQDFSNNIPLLDPQGNFG   81 (445)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEECCCCCC
T ss_conf             87788611488789999999999707988998515510046565046898688999999998676550575331689889


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEECCCCCCCCHHCCCCCEEEHHHHCCCCCCHHHH
Q ss_conf             87769720135789997899999986307684053306898854850343227321101676101013317898547899
Q gi|254780182|r  119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV  198 (910)
Q Consensus       119 s~dgd~~AA~RYte~rl~~~~~~~l~~i~~~tv~~~~n~D~~~~EP~vlP~~~P~lL~nG~~GIAvGmaTnippHNl~Ev  198 (910)
T Consensus        82 sr~g~~aAa~RYi~trLs~~~~~lf~~~d~~~l~y~~nyDg~~~EP~~~~p~iP~iLvNGa~GIgtG~sT~IP~hNp~ei  161 (445)
T cd00187          82 SRDGDDAAAMRYTETRLSPIARLLLPDIDDPTVDFVPNYDGQEVEPEVLPPIFPNLLVNGSSGIAVGMATNIPPHNLREV  161 (445)
T ss_pred             CCCCCCCCCHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHCCCEEEEEEECCCCCCCCHHHH
T ss_conf             99998321034565320076999864026450335358899736742205433077634661334200056788788999


Q ss_pred             HHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEEEEEECCCCCEEEEEECCCCCCCHH
Q ss_conf             99998876187768888886345866887443447588999987012038999988654336784599992464435289
Q gi|254780182|r  199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKA  278 (910)
Q Consensus       199 ~~a~~~~i~~p~~~~~eL~~~i~GPDFPTGG~I~~~~~i~~~y~tGrG~i~iR~k~~ie~~~~~k~~ivItEiPY~vnk~  278 (910)
T Consensus       162 i~~~~~~i~~~~~~~~~l~~~~~~P~f~~~g~I~~~~~~~~~~~tG~g~~~~rg~~~~~~~~-~~~~I~ITELP~g~~t~  240 (445)
T cd00187         162 IDALRALIDNPEASIDELMEIIKGPDFPTGGIIEGRAGIREAYETGRGRYIIRGKYEIEDDE-GRNTIEITELPYQVNKA  240 (445)
T ss_pred             HHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCEEECCCCCHHHEECCCCEEEEEEEEEEEECC-CCCEEEEEECCCCCCHH
T ss_conf             99998776077765788736788998999946855654012123279738997899998048-86279999558878899


Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHCCHHCCCCCEEEEEE-CCCCCCCCHHHH
Q ss_conf             9999999998716650144587303746557999947988778999999976101100000024554-166300029999
Q gi|254780182|r  279 AMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGI  357 (910)
Q Consensus       279 ~lie~Ia~lv~~~ki~gI~dirDeSdr~giRivielKr~~~~~~vln~Lyk~T~Lq~sf~~N~~aL~-~g~P~~l~Lk~i  357 (910)
T Consensus       241 ~~~e~i~~lv~~kk~~~I~d~~D~st~~~v~~vI~lk~~~~~~~~~~~L~k~tkL~~s~s~Nm~~~~~~g~p~~~~~~eI  320 (445)
T cd00187         241 KLKEKIAELVKDKKIEGISDVRDESDREGIRFVIELKRGAMAEVVLNGLYKVTKLQTTFGINMVAFDPNGRPKKLNLKEI  320 (445)
T ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCHHEEECCEEEEEECCCCEEECCHHHH
T ss_conf             99999999862477874665222688772479999779866688999999871501030333899937997755069999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCC
Q ss_conf             99999999999999999999999888778999999874069999998618997898787763126978899999740221
Q gi|254780182|r  358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS  437 (910)
Q Consensus       358 L~~fi~hR~evi~rRt~~~L~ka~~R~HILeGL~~Al~nIDeVI~iIR~S~d~~eAk~~L~~~~~~~~~~~~~~~~~~~~  437 (910)
T Consensus       321 L~~f~~~R~~~y~kR~~~~L~kl~~rl~il~~~~~fi~~id~ii~~ir~~~~~k~~l~~~l~~-----------------  383 (445)
T cd00187         321 LQEFLDHRLEVYTRRKEYELGKAEARLHILEGLLKAILNIDEVINLIRSSDEAKKALIEELEK-----------------  383 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-----------------
T ss_conf             999999999999999999999999999998649999997999999998535179999999876-----------------


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf             11222344523699999999987899998887999999899999999988753049899999999989999
Q gi|254780182|r  438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV  508 (910)
Q Consensus       438 ~~~~~~~~~f~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~eL~~~I~~l~~IL~s~~~l~~iI~~EL~ei  508 (910)
T Consensus       384 ---------~~~~~~q~dyLL~M~L~~LT~~e~~kL~~e~~~l~~ei~~L~~~l~~~~~~~~~~~~EL~ef  445 (445)
T cd00187         384 ---------LGFSEIQADAILDMRLRRLTKLEREKLLKELKELEAEIEDLEKILASEERPKDLWKEELDEF  445 (445)
T ss_pred             ---------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_conf             ---------79999999999976699875899999999999999999999998679688999999998509