HHsearch alignment for GI: 254780182 and conserved domain: pfam00521

>pfam00521 DNA_topoisoIV DNA gyrase/topoisomerase IV, subunit A.
Probab=100.00  E-value=0  Score=1083.97  Aligned_cols=423  Identities=54%  Similarity=0.849  Sum_probs=411.5

Q ss_pred             HCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHCCCCCCCCCCCCCC
Q ss_conf             13754000897367899999998789999981134042556643668870478999999712201115613147887088
Q gi|254780182|r   40 RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS  119 (910)
Q Consensus        40 RAlPd~rDGlKpv~Rrily~m~~~~~~~~~~~~K~a~ivg~v~gkyHPHGd~siy~a~v~maq~~~~r~plidg~GnfGs  119 (910)
T Consensus         1 RaiP~~~DGLKP~qRkil~~~~~~~l~~~~~~~Kva~l~G~v~~~YHpHGe~sl~~tiv~mAQ~f~~n~~Ll~~~GnFGs   80 (428)
T pfam00521         1 RAIPDVRDGLKPVQRRILYAMFELGLNLDKKYKKVARLVGDVMGKYHPHGDASIYDALVRMAQDFVGNIPLLDGQGNFGS   80 (428)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             99985234787899999999997278889986056433365663568885899999999986763156553216888888


Q ss_pred             C-CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEECCCCCCCCHHCCCCCEEEHHHHCCCCCCHHHH
Q ss_conf             7-769720135789997899999986307684053306898854850343227321101676101013317898547899
Q gi|254780182|r  120 V-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV  198 (910)
Q Consensus       120 ~-dgd~~AA~RYte~rl~~~~~~~l~~i~~~tv~~~~n~D~~~~EP~vlP~~~P~lL~nG~~GIAvGmaTnippHNl~Ev  198 (910)
T Consensus        81 r~~g~~~AA~RYi~trLs~~~~~if~~~d~~~l~~~~~yDg~~~EP~~y~piiP~iLvNG~~GIgtG~sT~IP~hNp~ei  160 (428)
T pfam00521        81 RLDGDKAAAMRYTEARLSKIARELFKDIDKDTVDFVPNYDGSEKEPTVLPPIIPNLLVNGASGIAVGMATNIPPHNLGEV  160 (428)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCCCHHHHCCCCCCEEHEECCCCCCCHHHH
T ss_conf             88898327788999757499999976426350155057898706751106655676623787301000027788888999


Q ss_pred             HHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEEEEEECCCCCEEEEEECCCCCCCHH
Q ss_conf             99998876187768888886345866887443447588999987012038999988654336784599992464435289
Q gi|254780182|r  199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKA  278 (910)
Q Consensus       199 ~~a~~~~i~~p~~~~~eL~~~i~GPDFPTGG~I~~~~~i~~~y~tGrG~i~iR~k~~ie~~~~~k~~ivItEiPY~vnk~  278 (910)
T Consensus       161 i~~~~~~l~~~~~~~---~~~~~~P~f~~f~g~i~~~~~~~~y~tG~G~~~~rg~~~i~~----~~~i~ITELP~g~~t~  233 (428)
T pfam00521       161 IDALIALLDGPEITL---LLKIPGPDFPTGGGIIGSGGIREAYKTGRGKITVRAKIEIEE----RKTIVITELPYGVWTE  233 (428)
T ss_pred             HHHHHHHHCCCCCCC---CCCCCCCCCCCCCEEECCCCHHHHHHCCCCEEEEEEEEEEEC----CCEEEEEECCCCCCHH
T ss_conf             999999853997223---575789979998624566116777643883599987999940----5269999447777899


Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHCCHHCCCCCEEEEEECCCCCCCCHHHHH
Q ss_conf             99999999987166501445873037465579999479887789999999761011000000245541663000299999
Q gi|254780182|r  279 AMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL  358 (910)
Q Consensus       279 ~lie~Ia~lv~~~ki~gI~dirDeSdr~giRivielKr~~~~~~vln~Lyk~T~Lq~sf~~N~~aL~~g~P~~l~Lk~iL  358 (910)
T Consensus       234 ~~~e~l~~l~~~~ki~~-~di~D~Sd~-~vr~vI~lk~~~~~~~~~~~L~k~~kL~~s~s~nnm~l~d~~pk~~s~~eIL  311 (428)
T pfam00521       234 KLIESIEELVKNGKIKG-SDIRDESDR-GVRIVIELKRGADPEVVLNKLYKKTKLQSSFSTNNLVLFDGGPKYLNLKEIL  311 (428)
T ss_pred             HHHHHHHHHHHCCCCCC-CCCCCCCCC-CEEEEEEECCCCCHHHHHHHHHHHHHHHEECCCEEEEEECCCCCHHHHHHHH
T ss_conf             99999999984588787-731016788-5679998578765678999999863001004637999967987374299999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCC
Q ss_conf             99999999999999999999998887789999998740699999986189978987877631269788999997402211
Q gi|254780182|r  359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS  438 (910)
Q Consensus       359 ~~fi~hR~evi~rRt~~~L~ka~~R~HILeGL~~Al~nIDeVI~iIR~S~d~~eAk~~L~~~~~~~~~~~~~~~~~~~~~  438 (910)
T Consensus       312 ~~f~~~R~~~y~kR~~~~l~kl~~~l~iL~gl~~~~~~idfIi~iI~~s~~~~~~k~~L~~~------------------  373 (428)
T pfam00521       312 KEFLEHRLEVYKRRKEYLLEKLEERLHILEGLLKALNKIDFVIEVIRGSIDLNKAKKELIEE------------------  373 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH------------------
T ss_conf             99999999999999999999999999999889999984999999997689616899999997------------------


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf             1222344523699999999987899998887999999899999999988753049899999
Q gi|254780182|r  439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG  499 (910)
Q Consensus       439 ~~~~~~~~f~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~eL~~~I~~l~~IL~s~~~l~~  499 (910)
T Consensus       374 ----------L~~~q~dyLL~m~L~~LT~~e~~kL~~e~~~l~~ei~~l~~~l~s~~~lw~  424 (428)
T pfam00521       374 ----------LSEIQADYLLDMRLRRLTKEEIEKLEKEIEELEKEIAELEKILASEKKLWI  424 (428)
T ss_pred             ----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf             ----------489989999976899872889999999999999999999977389999988