HHsearch alignment for GI: 254780182 and conserved domain: pfam00521
>pfam00521 DNA_topoisoIV DNA gyrase/topoisomerase IV, subunit A.
Probab=100.00 E-value=0 Score=1083.97 Aligned_cols=423 Identities=54% Similarity=0.849 Sum_probs=411.5
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHCCCCCCCCCCCCCC
Q ss_conf 13754000897367899999998789999981134042556643668870478999999712201115613147887088
Q gi|254780182|r 40 RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119 (910)
Q Consensus 40 RAlPd~rDGlKpv~Rrily~m~~~~~~~~~~~~K~a~ivg~v~gkyHPHGd~siy~a~v~maq~~~~r~plidg~GnfGs 119 (910)
T Consensus 1 RaiP~~~DGLKP~qRkil~~~~~~~l~~~~~~~Kva~l~G~v~~~YHpHGe~sl~~tiv~mAQ~f~~n~~Ll~~~GnFGs 80 (428)
T pfam00521 1 RAIPDVRDGLKPVQRRILYAMFELGLNLDKKYKKVARLVGDVMGKYHPHGDASIYDALVRMAQDFVGNIPLLDGQGNFGS 80 (428)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 99985234787899999999997278889986056433365663568885899999999986763156553216888888
Q ss_pred C-CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEECCCCCCCCHHCCCCCEEEHHHHCCCCCCHHHH
Q ss_conf 7-769720135789997899999986307684053306898854850343227321101676101013317898547899
Q gi|254780182|r 120 V-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198 (910)
Q Consensus 120 ~-dgd~~AA~RYte~rl~~~~~~~l~~i~~~tv~~~~n~D~~~~EP~vlP~~~P~lL~nG~~GIAvGmaTnippHNl~Ev 198 (910)
T Consensus 81 r~~g~~~AA~RYi~trLs~~~~~if~~~d~~~l~~~~~yDg~~~EP~~y~piiP~iLvNG~~GIgtG~sT~IP~hNp~ei 160 (428)
T pfam00521 81 RLDGDKAAAMRYTEARLSKIARELFKDIDKDTVDFVPNYDGSEKEPTVLPPIIPNLLVNGASGIAVGMATNIPPHNLGEV 160 (428)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCCCHHHHCCCCCCEEHEECCCCCCCHHHH
T ss_conf 88898327788999757499999976426350155057898706751106655676623787301000027788888999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEEEEEECCCCCEEEEEECCCCCCCHH
Q ss_conf 99998876187768888886345866887443447588999987012038999988654336784599992464435289
Q gi|254780182|r 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKA 278 (910)
Q Consensus 199 ~~a~~~~i~~p~~~~~eL~~~i~GPDFPTGG~I~~~~~i~~~y~tGrG~i~iR~k~~ie~~~~~k~~ivItEiPY~vnk~ 278 (910)
T Consensus 161 i~~~~~~l~~~~~~~---~~~~~~P~f~~f~g~i~~~~~~~~y~tG~G~~~~rg~~~i~~----~~~i~ITELP~g~~t~ 233 (428)
T pfam00521 161 IDALIALLDGPEITL---LLKIPGPDFPTGGGIIGSGGIREAYKTGRGKITVRAKIEIEE----RKTIVITELPYGVWTE 233 (428)
T ss_pred HHHHHHHHCCCCCCC---CCCCCCCCCCCCCEEECCCCHHHHHHCCCCEEEEEEEEEEEC----CCEEEEEECCCCCCHH
T ss_conf 999999853997223---575789979998624566116777643883599987999940----5269999447777899
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHCCHHCCCCCEEEEEECCCCCCCCHHHHH
Q ss_conf 99999999987166501445873037465579999479887789999999761011000000245541663000299999
Q gi|254780182|r 279 AMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358 (910)
Q Consensus 279 ~lie~Ia~lv~~~ki~gI~dirDeSdr~giRivielKr~~~~~~vln~Lyk~T~Lq~sf~~N~~aL~~g~P~~l~Lk~iL 358 (910)
T Consensus 234 ~~~e~l~~l~~~~ki~~-~di~D~Sd~-~vr~vI~lk~~~~~~~~~~~L~k~~kL~~s~s~nnm~l~d~~pk~~s~~eIL 311 (428)
T pfam00521 234 KLIESIEELVKNGKIKG-SDIRDESDR-GVRIVIELKRGADPEVVLNKLYKKTKLQSSFSTNNLVLFDGGPKYLNLKEIL 311 (428)
T ss_pred HHHHHHHHHHHCCCCCC-CCCCCCCCC-CEEEEEEECCCCCHHHHHHHHHHHHHHHEECCCEEEEEECCCCCHHHHHHHH
T ss_conf 99999999984588787-731016788-5679998578765678999999863001004637999967987374299999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCC
Q ss_conf 99999999999999999999998887789999998740699999986189978987877631269788999997402211
Q gi|254780182|r 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438 (910)
Q Consensus 359 ~~fi~hR~evi~rRt~~~L~ka~~R~HILeGL~~Al~nIDeVI~iIR~S~d~~eAk~~L~~~~~~~~~~~~~~~~~~~~~ 438 (910)
T Consensus 312 ~~f~~~R~~~y~kR~~~~l~kl~~~l~iL~gl~~~~~~idfIi~iI~~s~~~~~~k~~L~~~------------------ 373 (428)
T pfam00521 312 KEFLEHRLEVYKRRKEYLLEKLEERLHILEGLLKALNKIDFVIEVIRGSIDLNKAKKELIEE------------------ 373 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH------------------
T ss_conf 99999999999999999999999999999889999984999999997689616899999997------------------
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 1222344523699999999987899998887999999899999999988753049899999
Q gi|254780182|r 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499 (910)
Q Consensus 439 ~~~~~~~~f~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~eL~~~I~~l~~IL~s~~~l~~ 499 (910)
T Consensus 374 ----------L~~~q~dyLL~m~L~~LT~~e~~kL~~e~~~l~~ei~~l~~~l~s~~~lw~ 424 (428)
T pfam00521 374 ----------LSEIQADYLLDMRLRRLTKEEIEKLEKEIEELEKEIAELEKILASEKKLWI 424 (428)
T ss_pred ----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf ----------489989999976899872889999999999999999999977389999988