HHsearch alignment for GI: 254780182 and conserved domain: smart00434
>smart00434 TOP4c DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC
Probab=100.00 E-value=0 Score=1187.07 Aligned_cols=439 Identities=55% Similarity=0.851 Sum_probs=426.8
Q ss_pred ECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 00999998767877799886313754000897367899999998789999981134042556643668870478999999
Q gi|254780182|r 19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALA 98 (910)
Q Consensus 19 ~~~~~~m~~syl~Ya~svI~~RAlPd~rDGlKpv~Rrily~m~~~~~~~~~~~~K~a~ivg~v~gkyHPHGd~siy~a~v 98 (910)
T Consensus 1 i~i~d~~~~~~~~ys~~vi~~RaiP~~~DGLKPvqRriLy~~~~~~l~~~~~~~k~a~~~g~~~~~YHpHGd~s~~~aiv 80 (445)
T smart00434 1 IDIEDFINKEYLDYSMSVINGRAIPDVRDGLKPVQRRILYAMFKRGLTPDEPKVKSARGVGDVMGKYHPHGDSSLYDAIV 80 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEHHCCCCCCCHHHHHHHHH
T ss_conf 97799998999998899876034884002787899999999997389889862788888861001788886889999999
Q ss_pred HHCCCHHCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEECCCCCCCCHHC
Q ss_conf 7122011156131478870887-769720135789997899999986307684053306898854850343227321101
Q gi|254780182|r 99 RMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177 (910)
Q Consensus 99 ~maq~~~~r~plidg~GnfGs~-dgd~~AA~RYte~rl~~~~~~~l~~i~~~tv~~~~n~D~~~~EP~vlP~~~P~lL~n 177 (910)
T Consensus 81 ~mAQ~fs~n~~Ll~~~GnFGs~~~G~~aAa~RYie~rLs~~~~~~~~~~d~~~~~~~~n~Dg~~~EP~~~~p~iP~lLvN 160 (445)
T smart00434 81 RMAQDFSNNYPLLDGQGNFGSRLDGDDAAAMRYTETRLSPLARELLPDIDKDTVDFVPNYDGQEIEPTVLPPIIPNLLVN 160 (445)
T ss_pred HHHHHHHCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHCCCCCCHHEEE
T ss_conf 98474340554230588867889998203367888637799999876438780755438898726751027766730030
Q ss_pred CCCCEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEEEEE
Q ss_conf 67610101331789854789999998876187768888886345866887443447588999987012038999988654
Q gi|254780182|r 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257 (910)
Q Consensus 178 G~~GIAvGmaTnippHNl~Ev~~a~~~~i~~p~~~~~eL~~~i~GPDFPTGG~I~~~~~i~~~y~tGrG~i~iR~k~~ie 257 (910)
T Consensus 161 Gs~GIavG~sT~IPphN~~evi~a~~~~l~~~~~~~~~l~~~p~~pdF~gg~~~~-----------g~g~~~~rg~~~~~ 229 (445)
T smart00434 161 GSSGIAVGMATNIPPHNLREVIDAVRRLIDNPEASIDELMMIPWGPDFPTGGEII-----------GPGSYVVRGKIEIE 229 (445)
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCEEEE-----------CCCEEEEEEEEEEE
T ss_conf 7874254230477887889999988766518878889996388428999816993-----------39869999999998
Q ss_pred ECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHC-CCCCEEEEEEECCCCCHHHHHHHHHHHCCHHCC
Q ss_conf 3367845999924644352899999999998716650144587303-746557999947988778999999976101100
Q gi|254780182|r 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSL 336 (910)
Q Consensus 258 ~~~~~k~~ivItEiPY~vnk~~lie~Ia~lv~~~ki~gI~dirDeS-dr~giRivielKr~~~~~~vln~Lyk~T~Lq~s 336 (910)
T Consensus 230 ~---~~~~i~ItELP~g~~t~~~~e~i~~lv~~~ki~~i~~~~des~~~~~vrivI~lk~~~~~~~~~~~L~k~tkL~~s 306 (445)
T smart00434 230 D---GRNTIVITELPYQVNKAKLIEKIAELVKDKKIEGIIDVRDESHDRTGVRIVIELKRGAMAEVVLNGLYKLTKLQST 306 (445)
T ss_pred C---CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHEE
T ss_conf 7---9627999946876748999999999851356665010354328877526999988998989999999987201434
Q ss_pred CCCEEEEEE-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHH
Q ss_conf 000024554-166300029999999999999999999999999998-88778999999874069999998618997-898
Q gi|254780182|r 337 FSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKAR-DRAHVLVGLAIAVANLDEVVRIIRFSPNP-ETA 413 (910)
Q Consensus 337 f~~N~~aL~-~g~P~~l~Lk~iL~~fi~hR~evi~rRt~~~L~ka~-~R~HILeGL~~Al~nIDeVI~iIR~S~d~-~eA 413 (910)
T Consensus 307 ~s~N~~~l~~~g~p~~~~~~eIL~~f~~~R~~~~~kR~~~~L~kl~~~r~~i~~~~fi~~~~~d~ii~~~r~~~~~~~~l 386 (445)
T smart00434 307 FSINMLALFDNGKPKKYNLKEILKEFLDHRLEVYTRRKEYLLGKLEAERLHILEGLFIALSIIDEIIVLIRSSKDLAKEA 386 (445)
T ss_pred CCEEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHH
T ss_conf 15179999769935785259999999999999999999999999999999998869999973465776553687269999
Q ss_pred HHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 78776312697889999974022111222344523699999999987899998887999999899999999988753049
Q gi|254780182|r 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 (910)
Q Consensus 414 k~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~eL~~~I~~l~~IL~s 493 (910)
T Consensus 387 k~~l~~~--------------------------~~~s~~q~~yLL~M~L~~LT~~e~~kL~~E~~~l~~ei~~l~~~l~~ 440 (445)
T smart00434 387 KELLMER--------------------------FELSEEQADAILDMRLRRLTKLEVEKLEKELKELEKEIEDLEKILAS 440 (445)
T ss_pred HHHCCCC--------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_conf 9818866--------------------------79999999999966899872889999999999999999999846869
Q ss_pred HHHH
Q ss_conf 8999
Q gi|254780182|r 494 RSRL 497 (910)
Q Consensus 494 ~~~l 497 (910)
T Consensus 441 ~~wl 444 (445)
T smart00434 441 ELWL 444 (445)
T ss_pred HHCC
T ss_conf 6544