HHsearch alignment for GI: 254780182 and conserved domain: smart00434

>smart00434 TOP4c DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC
Probab=100.00  E-value=0  Score=1187.07  Aligned_cols=439  Identities=55%  Similarity=0.851  Sum_probs=426.8

Q ss_pred             ECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             00999998767877799886313754000897367899999998789999981134042556643668870478999999
Q gi|254780182|r   19 VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALA   98 (910)
Q Consensus        19 ~~~~~~m~~syl~Ya~svI~~RAlPd~rDGlKpv~Rrily~m~~~~~~~~~~~~K~a~ivg~v~gkyHPHGd~siy~a~v   98 (910)
T Consensus         1 i~i~d~~~~~~~~ys~~vi~~RaiP~~~DGLKPvqRriLy~~~~~~l~~~~~~~k~a~~~g~~~~~YHpHGd~s~~~aiv   80 (445)
T smart00434        1 IDIEDFINKEYLDYSMSVINGRAIPDVRDGLKPVQRRILYAMFKRGLTPDEPKVKSARGVGDVMGKYHPHGDSSLYDAIV   80 (445)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEHHCCCCCCCHHHHHHHHH
T ss_conf             97799998999998899876034884002787899999999997389889862788888861001788886889999999


Q ss_pred             HHCCCHHCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEECCCCCCCCHHC
Q ss_conf             7122011156131478870887-769720135789997899999986307684053306898854850343227321101
Q gi|254780182|r   99 RMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN  177 (910)
Q Consensus        99 ~maq~~~~r~plidg~GnfGs~-dgd~~AA~RYte~rl~~~~~~~l~~i~~~tv~~~~n~D~~~~EP~vlP~~~P~lL~n  177 (910)
T Consensus        81 ~mAQ~fs~n~~Ll~~~GnFGs~~~G~~aAa~RYie~rLs~~~~~~~~~~d~~~~~~~~n~Dg~~~EP~~~~p~iP~lLvN  160 (445)
T smart00434       81 RMAQDFSNNYPLLDGQGNFGSRLDGDDAAAMRYTETRLSPLARELLPDIDKDTVDFVPNYDGQEIEPTVLPPIIPNLLVN  160 (445)
T ss_pred             HHHHHHHCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHCCCCCCHHEEE
T ss_conf             98474340554230588867889998203367888637799999876438780755438898726751027766730030


Q ss_pred             CCCCEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEEEEE
Q ss_conf             67610101331789854789999998876187768888886345866887443447588999987012038999988654
Q gi|254780182|r  178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE  257 (910)
Q Consensus       178 G~~GIAvGmaTnippHNl~Ev~~a~~~~i~~p~~~~~eL~~~i~GPDFPTGG~I~~~~~i~~~y~tGrG~i~iR~k~~ie  257 (910)
T Consensus       161 Gs~GIavG~sT~IPphN~~evi~a~~~~l~~~~~~~~~l~~~p~~pdF~gg~~~~-----------g~g~~~~rg~~~~~  229 (445)
T smart00434      161 GSSGIAVGMATNIPPHNLREVIDAVRRLIDNPEASIDELMMIPWGPDFPTGGEII-----------GPGSYVVRGKIEIE  229 (445)
T ss_pred             CCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCEEEE-----------CCCEEEEEEEEEEE
T ss_conf             7874254230477887889999988766518878889996388428999816993-----------39869999999998


Q ss_pred             ECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHC-CCCCEEEEEEECCCCCHHHHHHHHHHHCCHHCC
Q ss_conf             3367845999924644352899999999998716650144587303-746557999947988778999999976101100
Q gi|254780182|r  258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSL  336 (910)
Q Consensus       258 ~~~~~k~~ivItEiPY~vnk~~lie~Ia~lv~~~ki~gI~dirDeS-dr~giRivielKr~~~~~~vln~Lyk~T~Lq~s  336 (910)
T Consensus       230 ~---~~~~i~ItELP~g~~t~~~~e~i~~lv~~~ki~~i~~~~des~~~~~vrivI~lk~~~~~~~~~~~L~k~tkL~~s  306 (445)
T smart00434      230 D---GRNTIVITELPYQVNKAKLIEKIAELVKDKKIEGIIDVRDESHDRTGVRIVIELKRGAMAEVVLNGLYKLTKLQST  306 (445)
T ss_pred             C---CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHEE
T ss_conf             7---9627999946876748999999999851356665010354328877526999988998989999999987201434


Q ss_pred             CCCEEEEEE-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHH
Q ss_conf             000024554-166300029999999999999999999999999998-88778999999874069999998618997-898
Q gi|254780182|r  337 FSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKAR-DRAHVLVGLAIAVANLDEVVRIIRFSPNP-ETA  413 (910)
Q Consensus       337 f~~N~~aL~-~g~P~~l~Lk~iL~~fi~hR~evi~rRt~~~L~ka~-~R~HILeGL~~Al~nIDeVI~iIR~S~d~-~eA  413 (910)
T Consensus       307 ~s~N~~~l~~~g~p~~~~~~eIL~~f~~~R~~~~~kR~~~~L~kl~~~r~~i~~~~fi~~~~~d~ii~~~r~~~~~~~~l  386 (445)
T smart00434      307 FSINMLALFDNGKPKKYNLKEILKEFLDHRLEVYTRRKEYLLGKLEAERLHILEGLFIALSIIDEIIVLIRSSKDLAKEA  386 (445)
T ss_pred             CCEEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHH
T ss_conf             15179999769935785259999999999999999999999999999999998869999973465776553687269999


Q ss_pred             HHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             78776312697889999974022111222344523699999999987899998887999999899999999988753049
Q gi|254780182|r  414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS  493 (910)
Q Consensus       414 k~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~eL~~~I~~l~~IL~s  493 (910)
T Consensus       387 k~~l~~~--------------------------~~~s~~q~~yLL~M~L~~LT~~e~~kL~~E~~~l~~ei~~l~~~l~~  440 (445)
T smart00434      387 KELLMER--------------------------FELSEEQADAILDMRLRRLTKLEVEKLEKELKELEKEIEDLEKILAS  440 (445)
T ss_pred             HHHCCCC--------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_conf             9818866--------------------------79999999999966899872889999999999999999999846869


Q ss_pred             HHHH
Q ss_conf             8999
Q gi|254780182|r  494 RSRL  497 (910)
Q Consensus       494 ~~~l  497 (910)
T Consensus       441 ~~wl  444 (445)
T smart00434      441 ELWL  444 (445)
T ss_pred             HHCC
T ss_conf             6544