HHsearch results for GI: 254780182 and protein with PDBid: 1zi0_A

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=100.00  E-value=0  Score=600.49  Aligned_cols=307  Identities=43%  Similarity=0.743  Sum_probs=294.2

Q ss_pred             CCCCEEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCC
Q ss_conf             56781899907970523310000023345652110001464101011332377739999548939998200043224445
Q gi|254780182|r  534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA  613 (910)
Q Consensus       534 ~~E~vvV~lS~~GyIKr~~~~~yr~Q~RggkG~~~~~~ke~D~v~~~~~~~t~d~LLfFTs~Gkvy~l~v~~IP~~sr~s  613 (910)
                      .+|+|+|++|++|||||+|+++|++|+|||+|+.++++|++|++.+++.|+|||+||||||+|++|++++|+||+++|++
T Consensus         1 ~eEdv~V~ls~~GyiKR~~~~~y~~q~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fTn~G~~~~~~v~eIp~~~~~~   80 (307)
T 1zi0_A            1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA   80 (307)
T ss_dssp             CCCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred             CCCCEEEEEECCCEEEEEEHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCC
T ss_conf             97679999968986887428997521468998334503789558999997189879999279759999920274212346


Q ss_pred             CCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEECHHHHHHCCCCCEEEEEECCCCEEEEEEECCCC
Q ss_conf             65541245453655620025663012566687179999479918984236862047772278661589857888961898
Q gi|254780182|r  614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE  693 (910)
Q Consensus       614 kG~pi~nll~l~~~E~I~ail~~~~~~~~~~~~~Lvl~Tk~G~VKkt~l~ef~~~r~~G~~aikLkegD~Li~v~~~~~~  693 (910)
                      +|.||.|++++.++|+|++++++.+++   ++.||+|+|++|+|||+++++|.+.+++|++||+|++||+|++|.+++++
T Consensus        81 ~G~~i~~ll~l~~~E~i~~~~~~~~~~---~~~~l~~~T~~G~iKr~~l~~f~~~r~~g~~ai~L~~~Delv~v~~~~~~  157 (307)
T 1zi0_A           81 RGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGE  157 (307)
T ss_dssp             CCEEGGGTSCCCTTCCEEEEEEESCCC---TTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTT
T ss_pred             CCCCHHEEECCCCCCEEEEEECCCCCC---CCCEEEEEECCCCEEEEECCCCCCCCCCCCEEEECCCCCEEEEEEEECCC
T ss_conf             782855040688885489998123356---67449999678717873031025767357087755899999999994799


Q ss_pred             CEEEEEECCCEEEEEEHHHCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             26999936985999758762354786655357675289986999897336665420000012223333333455544444
Q gi|254780182|r  694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT  773 (910)
Q Consensus       694 ~~Iil~T~~G~~lrF~~~evr~~~GR~a~GVkgIkL~~~D~Vv~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  773 (910)
                      ++++++|++|++|||+++++|++ ||+|+||+||+|+++|+||+|.++.                               
T Consensus       158 ~~v~l~T~~G~~lrf~~~~v~~~-gr~a~GV~gi~L~~~d~vv~~~~~~-------------------------------  205 (307)
T 1zi0_A          158 DEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRGIRLGEGDKVVSLIVPR-------------------------------  205 (307)
T ss_dssp             CEEEEEETTSEEEEEEGGGSCBC-CTTCCCEECCCCCTTCCEEEEECCC-------------------------------
T ss_pred             CEEEEEECCCEEEEEECCCCCCC-CCCCCCEEEEECCCCCEEEEEEECC-------------------------------
T ss_conf             73999983874898603300037-8888776705708999999998613-------------------------------


Q ss_pred             CCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCEEEEEHHHCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEE
Q ss_conf             44433322222320011101256867999975993453017884866757741488760677776868999972899649
Q gi|254780182|r  774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI  853 (910)
Q Consensus       774 ~~~~~~~~~~~~~~e~~~~~~~~~~~IL~vTe~G~GKRt~~~eyr~q~RGgkGv~~ik~~~~n~~g~lv~~~~V~~~DeI  853 (910)
                                            ++.++|++|++|||||+++++||.++|||+|++++++.+++  +.++++..|.++|++
T Consensus       206 ----------------------~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~~Gv~~~k~~~~~--~~~v~~~~v~~~d~i  261 (307)
T 1zi0_A          206 ----------------------GDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQVDDCDQI  261 (307)
T ss_dssp             ----------------------SSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTT--CSEEEEEEECTTCEE
T ss_pred             ----------------------CCCEEEEEECCCEEEEECCCEEEEECCCCCCCEEEECCCCC--CCEEEEEECCCCCEE
T ss_conf             ----------------------87169987448605994021431204565571422025667--738999982899879


Q ss_pred             EEEECCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEEECC
Q ss_conf             9994599899999010554451568738898089987999998356
Q gi|254780182|r  854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE  899 (910)
Q Consensus       854 lliT~~G~iiR~~v~~I~~~gR~a~GV~i~~L~~~D~Vv~va~i~~  899 (910)
                      +++|++|+++|+++++||.+||+|+||++++|+++|+|++|++|+|
T Consensus       262 ll~T~~G~~ir~~~~~i~~~gR~t~Gv~li~L~~~d~Vv~v~~v~e  307 (307)
T 1zi0_A          262 MMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAE  307 (307)
T ss_dssp             EEEESSCCEEEEEGGGSCBCCSSCCCEECSCCCTTCCEEEEEECCC
T ss_pred             EEEECCCEEEEEEHHHCCCCCCCCCCEEEEECCCCCEEEEEEECCC
T ss_conf             9991899799988546566788899879798799998999998589