HHsearch results for GI: 254780182 and protein with PDBid: 1zi0_A
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=100.00 E-value=0 Score=600.49 Aligned_cols=307 Identities=43% Similarity=0.743 Sum_probs=294.2
Q ss_pred CCCCEEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCCC
Q ss_conf 56781899907970523310000023345652110001464101011332377739999548939998200043224445
Q gi|254780182|r 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613 (910)
Q Consensus 534 ~~E~vvV~lS~~GyIKr~~~~~yr~Q~RggkG~~~~~~ke~D~v~~~~~~~t~d~LLfFTs~Gkvy~l~v~~IP~~sr~s 613 (910)
.+|+|+|++|++|||||+|+++|++|+|||+|+.++++|++|++.+++.|+|||+||||||+|++|++++|+||+++|++
T Consensus 1 ~eEdv~V~ls~~GyiKR~~~~~y~~q~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fTn~G~~~~~~v~eIp~~~~~~ 80 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCCCEEEEEECCCEEEEEEHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCC
T ss_conf 97679999968986887428997521468998334503789558999997189879999279759999920274212346
Q ss_pred CCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEECHHHHHHCCCCCEEEEEECCCCEEEEEEECCCC
Q ss_conf 65541245453655620025663012566687179999479918984236862047772278661589857888961898
Q gi|254780182|r 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693 (910)
Q Consensus 614 kG~pi~nll~l~~~E~I~ail~~~~~~~~~~~~~Lvl~Tk~G~VKkt~l~ef~~~r~~G~~aikLkegD~Li~v~~~~~~ 693 (910)
+|.||.|++++.++|+|++++++.+++ ++.||+|+|++|+|||+++++|.+.+++|++||+|++||+|++|.+++++
T Consensus 81 ~G~~i~~ll~l~~~E~i~~~~~~~~~~---~~~~l~~~T~~G~iKr~~l~~f~~~r~~g~~ai~L~~~Delv~v~~~~~~ 157 (307)
T 1zi0_A 81 RGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGE 157 (307)
T ss_dssp CCEEGGGTSCCCTTCCEEEEEEESCCC---TTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTT
T ss_pred CCCCHHEEECCCCCCEEEEEECCCCCC---CCCEEEEEECCCCEEEEECCCCCCCCCCCCEEEECCCCCEEEEEEEECCC
T ss_conf 782855040688885489998123356---67449999678717873031025767357087755899999999994799
Q ss_pred CEEEEEECCCEEEEEEHHHCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 26999936985999758762354786655357675289986999897336665420000012223333333455544444
Q gi|254780182|r 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773 (910)
Q Consensus 694 ~~Iil~T~~G~~lrF~~~evr~~~GR~a~GVkgIkL~~~D~Vv~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 773 (910)
++++++|++|++|||+++++|++ ||+|+||+||+|+++|+||+|.++.
T Consensus 158 ~~v~l~T~~G~~lrf~~~~v~~~-gr~a~GV~gi~L~~~d~vv~~~~~~------------------------------- 205 (307)
T 1zi0_A 158 DEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRGIRLGEGDKVVSLIVPR------------------------------- 205 (307)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBC-CTTCCCEECCCCCTTCCEEEEECCC-------------------------------
T ss_pred CEEEEEECCCEEEEEECCCCCCC-CCCCCCEEEEECCCCCEEEEEEECC-------------------------------
T ss_conf 73999983874898603300037-8888776705708999999998613-------------------------------
Q ss_pred CCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCEEEEEHHHCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEE
Q ss_conf 44433322222320011101256867999975993453017884866757741488760677776868999972899649
Q gi|254780182|r 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853 (910)
Q Consensus 774 ~~~~~~~~~~~~~~e~~~~~~~~~~~IL~vTe~G~GKRt~~~eyr~q~RGgkGv~~ik~~~~n~~g~lv~~~~V~~~DeI 853 (910)
++.++|++|++|||||+++++||.++|||+|++++++.+++ +.++++..|.++|++
T Consensus 206 ----------------------~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~~Gv~~~k~~~~~--~~~v~~~~v~~~d~i 261 (307)
T 1zi0_A 206 ----------------------GDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAVQVDDCDQI 261 (307)
T ss_dssp ----------------------SSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTT--CSEEEEEEECTTCEE
T ss_pred ----------------------CCCEEEEEECCCEEEEECCCEEEEECCCCCCCEEEECCCCC--CCEEEEEECCCCCEE
T ss_conf ----------------------87169987448605994021431204565571422025667--738999982899879
Q ss_pred EEEECCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEEEEECC
Q ss_conf 9994599899999010554451568738898089987999998356
Q gi|254780182|r 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899 (910)
Q Consensus 854 lliT~~G~iiR~~v~~I~~~gR~a~GV~i~~L~~~D~Vv~va~i~~ 899 (910)
+++|++|+++|+++++||.+||+|+||++++|+++|+|++|++|+|
T Consensus 262 ll~T~~G~~ir~~~~~i~~~gR~t~Gv~li~L~~~d~Vv~v~~v~e 307 (307)
T 1zi0_A 262 MMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAE 307 (307)
T ss_dssp EEEESSCCEEEEEGGGSCBCCSSCCCEECSCCCTTCCEEEEEECCC
T ss_pred EEEECCCEEEEEEHHHCCCCCCCCCCEEEEECCCCCEEEEEEECCC
T ss_conf 9991899799988546566788899879798799998999998589