HHsearch results for GI: 254780182 and protein with PDBid: 1zvu_A

>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA binding, DNA topology; 3.00A {Escherichia coli}
Probab=100.00  E-value=0  Score=1748.20  Aligned_cols=692  Identities=34%  Similarity=0.549  Sum_probs=652.6

Q ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHCCCCCCCCCCCC
Q ss_conf             63137540008973678999999987899999811340425566436688704789999997122011156131478870
Q gi|254780182|r   38 LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF  117 (910)
Q Consensus        38 ~~RAlPd~rDGlKpv~Rrily~m~~~~~~~~~~~~K~a~ivg~v~gkyHPHGd~siy~a~v~maq~~~~r~plidg~Gnf  117 (910)
                      .+|||||+|||||||||||||||+++|++++++|+||||+||+||||||||||+|+|||||||||+|+|||||+||||||
T Consensus         1 l~RalP~~~DGlKpvqRril~~m~~~~~~~~~~~~k~a~~vg~v~g~yhpHGd~s~~~a~v~maq~~~~~~pl~~~~Gnf   80 (716)
T 1zvu_A            1 MDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNW   80 (716)
T ss_dssp             -CCCCCBTTTCCCHHHHHHHHHHSTTCC----------CCHHHHHTTTSCTTCHHHHHHHHHHTSTTSCSSCSEEECSCC
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCC
T ss_conf             98778972238857888999999862898999854435479887418889759999999999835323046216478987


Q ss_pred             CCCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEECCCCCCCCHHCCCCCEEEHHHHCCCCCCHH
Q ss_conf             8877697-201357899978999999863076840533068988548503432273211016761010133178985478
Q gi|254780182|r  118 GSVDGDP-PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG  196 (910)
Q Consensus       118 Gs~dgd~-~AA~RYte~rl~~~~~~~l~~i~~~tv~~~~n~D~~~~EP~vlP~~~P~lL~nG~~GIAvGmaTnippHNl~  196 (910)
                      ||+||++ ||||||||||||+++++||.|+|++||+|+|||||+++||+|||++|||||||||+|||||||||||||||+
T Consensus        81 Gs~~~~~~~Aa~RY~e~rls~~~~~~~~~~~~~~~~~~~n~Dg~~~EP~~lp~~~P~lLvNG~~GIavG~aT~IpphNl~  160 (716)
T 1zvu_A           81 GAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR  160 (716)
T ss_dssp             SSSSSCCCTTSSCGGGEEECGGGHHHHTTTTSSCSCEEECTTSSSEEESSCCCSSCHHHHHCCCSCCSSCSCBCCCBCHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHCCCCCCHH
T ss_conf             89999965465667873557999998764065744766388987458730266564776357765456765277663368


Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCC-HHHHHHHHHHCCCEEEEEEEEEEEECCCCCEEEEEECCCCCC
Q ss_conf             9999998876187768888886345866887443447-588999987012038999988654336784599992464435
Q gi|254780182|r  197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV  275 (910)
Q Consensus       197 Ev~~a~~~~i~~p~~~~~eL~~~i~GPDFPTGG~I~~-~~~i~~~y~tGrG~i~iR~k~~ie~~~~~k~~ivItEiPY~v  275 (910)
                      ||++||+++|++|++++++||++||||||||||+|++ .++|.++|+||||+|++||+|++|+     ++||||||||||
T Consensus       161 ev~~a~~~~i~~~~~~~~~l~~~i~gPdfptgg~i~~~~~~i~~~y~tG~G~i~~r~~~~~e~-----~~ivItEiPy~~  235 (716)
T 1zvu_A          161 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED-----GAVVISALPHQV  235 (716)
T ss_dssp             HHHHHHHHHHHCTTCCHHHHTTTCCSBCCSSSSEECSCTTHHHHHHHHTEEEEEEECEEEEET-----TEEEEEECCTTC
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHCCCEEEEEEEEEECCC-----CEEEEEECCCCC
T ss_conf             888778998629987889996137789989856697684888876526985999999982448-----749999788545


Q ss_pred             CHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEE--EEECCCCCHHHHHHHHHHHCCHHCCCCCEEEEE-ECCCCCCC
Q ss_conf             289999999999871665014458730374655799--994798877899999997610110000002455-41663000
Q gi|254780182|r  276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV--IELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERF  352 (910)
Q Consensus       276 nk~~lie~Ia~lv~~~ki~gI~dirDeSdr~giRiv--ielKr~~~~~~vln~Lyk~T~Lq~sf~~N~~aL-~~g~P~~l  352 (910)
                      ||++++|+|++++++||++||+|+|||||++|+|+|  ++.+++++++.|||+|||+|+||+||++||+++ ++|+|+++
T Consensus       236 ~~~~lie~i~~lv~~kki~~i~d~~DeSd~~~~~~vv~~~~~~~~~~e~vl~~Lyk~T~Lq~s~~~N~~~i~~~g~P~~~  315 (716)
T 1zvu_A          236 SGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK  315 (716)
T ss_dssp             CHHHHHHHHHHHHHTTSCTTEEEEEECCCSSSTTCEEEEESSSSCCHHHHHHHHHHHSTTEEEEEEECEEECTTSCEEEC
T ss_pred             CHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCHHHHHCCCCEEEEEECCCCCCC
T ss_conf             67889999998876489662000111356667579995055568899999999998442344313045788309964505


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             29999999999999999999999999998887789999998740699999986189978987877631269788999997
Q gi|254780182|r  353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID  432 (910)
Q Consensus       353 ~Lk~iL~~fi~hR~evi~rRt~~~L~ka~~R~HILeGL~~Al~nIDeVI~iIR~S~d~~eAk~~L~~~~~~~~~~~~~~~  432 (910)
                      +|+++|++|++||++|++||++|+|+|+++|+||||||++|+.+||+||++||+|+++.   .+||++            
T Consensus       316 ~l~eiL~~f~~~R~evi~rR~~~~L~k~~~rl~ilegl~~a~~~iD~vI~iIr~s~~~~---~~l~~~------------  380 (716)
T 1zvu_A          316 NLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPK---PALMSR------------  380 (716)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSHH---HHHHHS------------
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH---HHHHHH------------
T ss_conf             79999999999999999999999999999999999829999983999999996588558---999985------------


Q ss_pred             HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             40221112223445236999999999878999988879999998999999999887530498999999999899999840
Q gi|254780182|r  433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL  512 (910)
Q Consensus       433 ~~~~~~~~~~~~~~f~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~eL~~~I~~l~~IL~s~~~l~~iI~~EL~eik~ky  512 (910)
                                    |+|||.||+|||+|||||||+||++||++|+++|.++|++|++||+|+++++++|++||.+++++|
T Consensus       381 --------------f~~se~Qa~aIL~mrL~~Lt~le~~kl~~E~~~l~~~i~~l~~IL~s~~~l~~~I~~EL~elkkkf  446 (716)
T 1zvu_A          381 --------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY  446 (716)
T ss_dssp             --------------TTCCTTHHHHHHTCCGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf             --------------599989999999757878778889999999999999999997420488898999998999999971


Q ss_pred             CCCCCCEEECCC--CCCCCCCCCCCCCEEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEECCCCEEE
Q ss_conf             568833100134--345301014567818999079705233100000233456521100014641010113323777399
Q gi|254780182|r  513 DTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL  590 (910)
Q Consensus       513 gd~RRT~I~~~~--~~i~~EdlI~~E~vvV~lS~~GyIKr~~~~~yr~Q~RggkG~~~~~~ke~D~v~~~~~~~t~d~LL  590 (910)
                      |++|||.|.+..  .+++.+++|++|+++|++|+.|||||++.++|+.|        +++++++|.+.+++.|+|||+|+
T Consensus       447 gd~RRT~i~~~~~~~~~~~edli~~e~v~V~ls~~GyIkr~~~~~~~~~--------~~~~k~~D~~~~~~~~~t~d~ll  518 (716)
T 1zvu_A          447 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP--------GLNYKAGDSFKAAVKGKSNQPVV  518 (716)
T ss_dssp             CCCCCSCBCCCCCCCCCCSSTTSCCCCCCEEEETTTEEEECCC-----------------------CCEEECCCSSSCEE
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHCCCCCEEEEECCCCEEEECCCCCCCCC--------CCCCCCCCCCEEEEEEECCCCEE
T ss_conf             8988742214532245788780767650688636876862367765544--------54232366534789971576406


Q ss_pred             EEECCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEECHHHHHHCCC
Q ss_conf             99548939998200043224445655412454536556200256630125666871799994799189842368620477
Q gi|254780182|r  591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR  670 (910)
Q Consensus       591 fFTs~Gkvy~l~v~~IP~~sr~skG~pi~nll~l~~~E~I~ail~~~~~~~~~~~~~Lvl~Tk~G~VKkt~l~ef~~~r~  670 (910)
                      |||+.||||++++|+||++  +++|.|+.|+++++++|+|++++++.      ++.+++|+|++|++||+++++|.+.++
T Consensus       519 ~fT~~Grvy~l~v~~lP~~--~~kG~pi~~~l~l~~~E~I~~i~~~~------~d~~lll~T~~G~~K~~~l~~~~~~~k  590 (716)
T 1zvu_A          519 FVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDHMLMES------DDQKLLMASDAGYGFVCTFNDLVARNR  590 (716)
T ss_dssp             EEETTSEEEEECTTTSCCC--C---CBSTTTSCCCTTCCEEEEECCC------TTCEEEEEBTTSEEEEEEGGGGCCCST
T ss_pred             EECCCCCEEEEEEEECCCC--CCCCCCCCCCCCCCCCCEEEEEEECC------CCCEEEEEECCCCEEEEEHHHHCCCCC
T ss_conf             8835882799741457677--67886543410479998489987327------886799997589589985136105475


Q ss_pred             CCEEEEEECCCCEEEEEEECCC-CCEEEEEECCCEEEEEEHHHCCCCCCCCCCCEEEEECCC------CCEEEEEEEECC
Q ss_conf             7227866158985788896189-826999936985999758762354786655357675289------986999897336
Q gi|254780182|r  671 SGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK------GDQVISMAIVLH  743 (910)
Q Consensus       671 ~G~~aikLkegD~Li~v~~~~~-~~~Iil~T~~G~~lrF~~~evr~~~GR~a~GVkgIkL~~------~D~Vv~~~vi~~  743 (910)
                      +|+.||+|++||+|+.|..+++ +++|+++|++|++|||++++||+| || ++||+||+|++      +|.|+++.++++
T Consensus       591 ~Gk~aikLke~Deli~~~~~~~~~d~vl~vT~~Gk~lrF~~~ev~~~-gr-g~GVkgikL~~~~~~~~~d~v~~~~v~~~  668 (716)
T 1zvu_A          591 AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQL-SK-GKGNKIINIPSAEAARGEDGLAQLYVLPP  668 (716)
T ss_dssp             TCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBC-SS-BSCEESSCCCHHHHHTTSSCEEEEEEECS
T ss_pred             CCCEEEEECCCCEEEEEEEECCCCCEEEEECCCCEEEEEEHHHCCCC-CC-CCCCCEEECCCCCCCCCCCEEEEEEEECC
T ss_conf             77377876899889989996599988999888982999788998865-75-47712073065555567855999999779


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCEEEEEHH-HCCCCCC
Q ss_conf             665420000012223333333455544444444333222223200111012568679999759934530178-8486675
Q gi|254780182|r  744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY-DFRISNR  822 (910)
Q Consensus       744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~IL~vTe~G~GKRt~~~-eyr~q~R  822 (910)
                      .                                                     ..++++|++|++|+++.+ +|+.++|
T Consensus       669 ~-----------------------------------------------------~~llv~t~~g~~k~~~~~~~~~~~~R  695 (716)
T 1zvu_A          669 Q-----------------------------------------------------STLTIHVGKRKIKLRPEELQKVTGER  695 (716)
T ss_dssp             S-----------------------------------------------------CCEEEEETTEEEEECHHHHTTSBCCT
T ss_pred             C-----------------------------------------------------CEEEEEECCCEEEECHHHHHHHCCCC
T ss_conf             9-----------------------------------------------------86999988980785878830201787


Q ss_pred             CCCCEEEEECCC
Q ss_conf             774148876067
Q gi|254780182|r  823 SGKGIRATDVSK  834 (910)
Q Consensus       823 GgkGv~~ik~~~  834 (910)
                      ||+|++.+++.+
T Consensus       696 g~kG~~~~~~~k  707 (716)
T 1zvu_A          696 GRRGTLMRGLQR  707 (716)
T ss_dssp             TSCCEECTTCCS
T ss_pred             CCCCCCCCCCCC
T ss_conf             888879977766