HHsearch results for GI: 254780182 and protein with PDBid: 1zvu_A
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA binding, DNA topology; 3.00A {Escherichia coli}
Probab=100.00 E-value=0 Score=1748.20 Aligned_cols=692 Identities=34% Similarity=0.549 Sum_probs=652.6
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHCCCCCCCCCCCC
Q ss_conf 63137540008973678999999987899999811340425566436688704789999997122011156131478870
Q gi|254780182|r 38 LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117 (910)
Q Consensus 38 ~~RAlPd~rDGlKpv~Rrily~m~~~~~~~~~~~~K~a~ivg~v~gkyHPHGd~siy~a~v~maq~~~~r~plidg~Gnf 117 (910)
.+|||||+|||||||||||||||+++|++++++|+||||+||+||||||||||+|+|||||||||+|+|||||+||||||
T Consensus 1 l~RalP~~~DGlKpvqRril~~m~~~~~~~~~~~~k~a~~vg~v~g~yhpHGd~s~~~a~v~maq~~~~~~pl~~~~Gnf 80 (716)
T 1zvu_A 1 MDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNW 80 (716)
T ss_dssp -CCCCCBTTTCCCHHHHHHHHHHSTTCC----------CCHHHHHTTTSCTTCHHHHHHHHHHTSTTSCSSCSEEECSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCC
T ss_conf 98778972238857888999999862898999854435479887418889759999999999835323046216478987
Q ss_pred CCCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEECCCCCCCCHHCCCCCEEEHHHHCCCCCCHH
Q ss_conf 8877697-201357899978999999863076840533068988548503432273211016761010133178985478
Q gi|254780182|r 118 GSVDGDP-PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196 (910)
Q Consensus 118 Gs~dgd~-~AA~RYte~rl~~~~~~~l~~i~~~tv~~~~n~D~~~~EP~vlP~~~P~lL~nG~~GIAvGmaTnippHNl~ 196 (910)
||+||++ ||||||||||||+++++||.|+|++||+|+|||||+++||+|||++|||||||||+|||||||||||||||+
T Consensus 81 Gs~~~~~~~Aa~RY~e~rls~~~~~~~~~~~~~~~~~~~n~Dg~~~EP~~lp~~~P~lLvNG~~GIavG~aT~IpphNl~ 160 (716)
T 1zvu_A 81 GAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 160 (716)
T ss_dssp SSSSSCCCTTSSCGGGEEECGGGHHHHTTTTSSCSCEEECTTSSSEEESSCCCSSCHHHHHCCCSCCSSCSCBCCCBCHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHCCCCCCHH
T ss_conf 89999965465667873557999998764065744766388987458730266564776357765456765277663368
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCC-HHHHHHHHHHCCCEEEEEEEEEEEECCCCCEEEEEECCCCCC
Q ss_conf 9999998876187768888886345866887443447-588999987012038999988654336784599992464435
Q gi|254780182|r 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275 (910)
Q Consensus 197 Ev~~a~~~~i~~p~~~~~eL~~~i~GPDFPTGG~I~~-~~~i~~~y~tGrG~i~iR~k~~ie~~~~~k~~ivItEiPY~v 275 (910)
||++||+++|++|++++++||++||||||||||+|++ .++|.++|+||||+|++||+|++|+ ++||||||||||
T Consensus 161 ev~~a~~~~i~~~~~~~~~l~~~i~gPdfptgg~i~~~~~~i~~~y~tG~G~i~~r~~~~~e~-----~~ivItEiPy~~ 235 (716)
T 1zvu_A 161 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED-----GAVVISALPHQV 235 (716)
T ss_dssp HHHHHHHHHHHCTTCCHHHHTTTCCSBCCSSSSEECSCTTHHHHHHHHTEEEEEEECEEEEET-----TEEEEEECCTTC
T ss_pred HHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHCCCEEEEEEEEEECCC-----CEEEEEECCCCC
T ss_conf 888778998629987889996137789989856697684888876526985999999982448-----749999788545
Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEE--EEECCCCCHHHHHHHHHHHCCHHCCCCCEEEEE-ECCCCCCC
Q ss_conf 289999999999871665014458730374655799--994798877899999997610110000002455-41663000
Q gi|254780182|r 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV--IELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERF 352 (910)
Q Consensus 276 nk~~lie~Ia~lv~~~ki~gI~dirDeSdr~giRiv--ielKr~~~~~~vln~Lyk~T~Lq~sf~~N~~aL-~~g~P~~l 352 (910)
||++++|+|++++++||++||+|+|||||++|+|+| ++.+++++++.|||+|||+|+||+||++||+++ ++|+|+++
T Consensus 236 ~~~~lie~i~~lv~~kki~~i~d~~DeSd~~~~~~vv~~~~~~~~~~e~vl~~Lyk~T~Lq~s~~~N~~~i~~~g~P~~~ 315 (716)
T 1zvu_A 236 SGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK 315 (716)
T ss_dssp CHHHHHHHHHHHHHTTSCTTEEEEEECCCSSSTTCEEEEESSSSCCHHHHHHHHHHHSTTEEEEEEECEEECTTSCEEEC
T ss_pred CHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCHHHHHCCCCEEEEEECCCCCCC
T ss_conf 67889999998876489662000111356667579995055568899999999998442344313045788309964505
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 29999999999999999999999999998887789999998740699999986189978987877631269788999997
Q gi|254780182|r 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432 (910)
Q Consensus 353 ~Lk~iL~~fi~hR~evi~rRt~~~L~ka~~R~HILeGL~~Al~nIDeVI~iIR~S~d~~eAk~~L~~~~~~~~~~~~~~~ 432 (910)
+|+++|++|++||++|++||++|+|+|+++|+||||||++|+.+||+||++||+|+++. .+||++
T Consensus 316 ~l~eiL~~f~~~R~evi~rR~~~~L~k~~~rl~ilegl~~a~~~iD~vI~iIr~s~~~~---~~l~~~------------ 380 (716)
T 1zvu_A 316 NLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPK---PALMSR------------ 380 (716)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSHH---HHHHHS------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH---HHHHHH------------
T ss_conf 79999999999999999999999999999999999829999983999999996588558---999985------------
Q ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 40221112223445236999999999878999988879999998999999999887530498999999999899999840
Q gi|254780182|r 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512 (910)
Q Consensus 433 ~~~~~~~~~~~~~~f~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~eL~~~I~~l~~IL~s~~~l~~iI~~EL~eik~ky 512 (910)
|+|||.||+|||+|||||||+||++||++|+++|.++|++|++||+|+++++++|++||.+++++|
T Consensus 381 --------------f~~se~Qa~aIL~mrL~~Lt~le~~kl~~E~~~l~~~i~~l~~IL~s~~~l~~~I~~EL~elkkkf 446 (716)
T 1zvu_A 381 --------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 446 (716)
T ss_dssp --------------TTCCTTHHHHHHTCCGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf --------------599989999999757878778889999999999999999997420488898999998999999971
Q ss_pred CCCCCCEEECCC--CCCCCCCCCCCCCEEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEECCCCEEE
Q ss_conf 568833100134--345301014567818999079705233100000233456521100014641010113323777399
Q gi|254780182|r 513 DTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 (910)
Q Consensus 513 gd~RRT~I~~~~--~~i~~EdlI~~E~vvV~lS~~GyIKr~~~~~yr~Q~RggkG~~~~~~ke~D~v~~~~~~~t~d~LL 590 (910)
|++|||.|.+.. .+++.+++|++|+++|++|+.|||||++.++|+.| +++++++|.+.+++.|+|||+|+
T Consensus 447 gd~RRT~i~~~~~~~~~~~edli~~e~v~V~ls~~GyIkr~~~~~~~~~--------~~~~k~~D~~~~~~~~~t~d~ll 518 (716)
T 1zvu_A 447 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP--------GLNYKAGDSFKAAVKGKSNQPVV 518 (716)
T ss_dssp CCCCCSCBCCCCCCCCCCSSTTSCCCCCCEEEETTTEEEECCC-----------------------CCEEECCCSSSCEE
T ss_pred CCCCCCCCCCCCCCCCCCHHHHCCCCCEEEEECCCCEEEECCCCCCCCC--------CCCCCCCCCCEEEEEEECCCCEE
T ss_conf 8988742214532245788780767650688636876862367765544--------54232366534789971576406
Q ss_pred EEECCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEECHHHHHHCCC
Q ss_conf 99548939998200043224445655412454536556200256630125666871799994799189842368620477
Q gi|254780182|r 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670 (910)
Q Consensus 591 fFTs~Gkvy~l~v~~IP~~sr~skG~pi~nll~l~~~E~I~ail~~~~~~~~~~~~~Lvl~Tk~G~VKkt~l~ef~~~r~ 670 (910)
|||+.||||++++|+||++ +++|.|+.|+++++++|+|++++++. ++.+++|+|++|++||+++++|.+.++
T Consensus 519 ~fT~~Grvy~l~v~~lP~~--~~kG~pi~~~l~l~~~E~I~~i~~~~------~d~~lll~T~~G~~K~~~l~~~~~~~k 590 (716)
T 1zvu_A 519 FVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDHMLMES------DDQKLLMASDAGYGFVCTFNDLVARNR 590 (716)
T ss_dssp EEETTSEEEEECTTTSCCC--C---CBSTTTSCCCTTCCEEEEECCC------TTCEEEEEBTTSEEEEEEGGGGCCCST
T ss_pred EECCCCCEEEEEEEECCCC--CCCCCCCCCCCCCCCCCEEEEEEECC------CCCEEEEEECCCCEEEEEHHHHCCCCC
T ss_conf 8835882799741457677--67886543410479998489987327------886799997589589985136105475
Q ss_pred CCEEEEEECCCCEEEEEEECCC-CCEEEEEECCCEEEEEEHHHCCCCCCCCCCCEEEEECCC------CCEEEEEEEECC
Q ss_conf 7227866158985788896189-826999936985999758762354786655357675289------986999897336
Q gi|254780182|r 671 SGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK------GDQVISMAIVLH 743 (910)
Q Consensus 671 ~G~~aikLkegD~Li~v~~~~~-~~~Iil~T~~G~~lrF~~~evr~~~GR~a~GVkgIkL~~------~D~Vv~~~vi~~ 743 (910)
+|+.||+|++||+|+.|..+++ +++|+++|++|++|||++++||+| || ++||+||+|++ +|.|+++.++++
T Consensus 591 ~Gk~aikLke~Deli~~~~~~~~~d~vl~vT~~Gk~lrF~~~ev~~~-gr-g~GVkgikL~~~~~~~~~d~v~~~~v~~~ 668 (716)
T 1zvu_A 591 AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQL-SK-GKGNKIINIPSAEAARGEDGLAQLYVLPP 668 (716)
T ss_dssp TCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBC-SS-BSCEESSCCCHHHHHTTSSCEEEEEEECS
T ss_pred CCCEEEEECCCCEEEEEEEECCCCCEEEEECCCCEEEEEEHHHCCCC-CC-CCCCCEEECCCCCCCCCCCEEEEEEEECC
T ss_conf 77377876899889989996599988999888982999788998865-75-47712073065555567855999999779
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCEEEEEHH-HCCCCCC
Q ss_conf 665420000012223333333455544444444333222223200111012568679999759934530178-8486675
Q gi|254780182|r 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY-DFRISNR 822 (910)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~IL~vTe~G~GKRt~~~-eyr~q~R 822 (910)
. ..++++|++|++|+++.+ +|+.++|
T Consensus 669 ~-----------------------------------------------------~~llv~t~~g~~k~~~~~~~~~~~~R 695 (716)
T 1zvu_A 669 Q-----------------------------------------------------STLTIHVGKRKIKLRPEELQKVTGER 695 (716)
T ss_dssp S-----------------------------------------------------CCEEEEETTEEEEECHHHHTTSBCCT
T ss_pred C-----------------------------------------------------CEEEEEECCCEEEECHHHHHHHCCCC
T ss_conf 9-----------------------------------------------------86999988980785878830201787
Q ss_pred CCCCEEEEECCC
Q ss_conf 774148876067
Q gi|254780182|r 823 SGKGIRATDVSK 834 (910)
Q Consensus 823 GgkGv~~ik~~~ 834 (910)
||+|++.+++.+
T Consensus 696 g~kG~~~~~~~k 707 (716)
T 1zvu_A 696 GRRGTLMRGLQR 707 (716)
T ss_dssp TSCCEECTTCCS
T ss_pred CCCCCCCCCCCC
T ss_conf 888879977766