HHsearch results for GI: 254780182 and protein with PDBid: 1zvu_A
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA binding, DNA topology; 3.00A {Escherichia coli}
Probab=99.74 E-value=5.3e-17 Score=169.24 Aligned_cols=234 Identities=15% Similarity=0.229 Sum_probs=160.0
Q ss_pred CCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEECHHHH
Q ss_conf 77399995489399982000432244456554124545365562002566301256668717999947991898423686
Q gi|254780182|r 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665 (910)
Q Consensus 586 ~d~LLfFTs~Gkvy~l~v~~IP~~sr~skG~pi~nll~l~~~E~I~ail~~~~~~~~~~~~~Lvl~Tk~G~VKkt~l~ef 665 (910)
.+-++.+|..|-+-..+.+..... | ++..++..+..++.. ....+|+|+|.+|.+......+.
T Consensus 472 e~v~V~ls~~GyIkr~~~~~~~~~-----~------~~~k~~D~~~~~~~~------~t~d~ll~fT~~Grvy~l~v~~l 534 (716)
T 1zvu_A 472 EPVTIVLSQMGWVRSAKGHDIDAP-----G------LNYKAGDSFKAAVKG------KSNQPVVFVDSTGRSYAIDPITL 534 (716)
T ss_dssp CCCCEEEETTTEEEECCC--------------------------CCEEECC------CSSSCEEEEETTSEEEEECTTTS
T ss_pred CCEEEEECCCCEEEECCCCCCCCC-----C------CCCCCCCCCEEEEEE------ECCCCEEEECCCCCEEEEEEEEC
T ss_conf 650688636876862367765544-----5------423236653478997------15764068835882799741457
Q ss_pred HHCCCCCEE---EEEECCCCEEEEEEECCCCCEEEEEECCCEEEEEEHHHCCCCCCCCCCCEEEEECCCCCEEEEEEEEC
Q ss_conf 204777227---86615898578889618982699993698599975876235478665535767528998699989733
Q gi|254780182|r 666 IQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742 (910)
Q Consensus 666 ~~~r~~G~~---aikLkegD~Li~v~~~~~~~~Iil~T~~G~~lrF~~~evr~~~GR~a~GVkgIkL~~~D~Vv~~~vi~ 742 (910)
...+..|.. .++|+++.+++.+....++..++++|++|+.-+++.+++-. ++..|.+.|+|++||+++++..+.
T Consensus 535 P~~~~kG~pi~~~l~l~~~E~I~~i~~~~~d~~lll~T~~G~~K~~~l~~~~~---~~k~Gk~aikLke~Deli~~~~~~ 611 (716)
T 1zvu_A 535 PSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVA---RNRAGKALITLPENAHVMPPVVIE 611 (716)
T ss_dssp CCCC---CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCC---CSTTCEECBCCCTTCCBCCCEECC
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEEHHHHCC---CCCCCCEEEEECCCCEEEEEEEEC
T ss_conf 67767886543410479998489987327886799997589589985136105---475773778768998899899965
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCEEEEEHHHCCCCCC
Q ss_conf 66654200000122233333334555444444443332222232001110125686799997599345301788486675
Q gi|254780182|r 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822 (910)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~IL~vTe~G~GKRt~~~eyr~q~R 822 (910)
+ ++++|+++|++|+.-|-+.++.|.++|
T Consensus 612 ~----------------------------------------------------~~d~vl~vT~~Gk~lrF~~~ev~~~gr 639 (716)
T 1zvu_A 612 D----------------------------------------------------ASDMLLAITQAGRMLMFPVSDLPQLSK 639 (716)
T ss_dssp C----------------------------------------------------TTCEEEEEETTSEEEEEESTTSCBCSS
T ss_pred C----------------------------------------------------CCCEEEEECCCCEEEEEEHHHCCCCCC
T ss_conf 9----------------------------------------------------998899988898299978899886575
Q ss_pred CCCCEEEEECCCCC---CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC-CCCCCCCCCCEEEEECCCCEEE
Q ss_conf 77414887606777---7686899997289964999945998999990105-5445156873889808998799
Q gi|254780182|r 823 SGKGIRATDVSKIN---EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI-RIASRATKGVVIFSTAKDERVV 892 (910)
Q Consensus 823 GgkGv~~ik~~~~n---~~g~lv~~~~V~~~DeIlliT~~G~iiR~~v~~I-~~~gR~a~GV~i~~L~~~D~Vv 892 (910)
|+||+.|++.+.+ ..+.|+++..+++++.++++|.+|..-+...+.- +.+.|+++||.++.+...|++.
T Consensus 640 -g~GVkgikL~~~~~~~~~d~v~~~~v~~~~~~llv~t~~g~~k~~~~~~~~~~~~Rg~kG~~~~~~~k~D~~e 712 (716)
T 1zvu_A 640 -GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVE 712 (716)
T ss_dssp -BSCEESSCCCHHHHHTTSSCEEEEEEECSSCCEEEEETTEEEEECHHHHTTSBCCTTSCCEECTTCCSCCEEE
T ss_pred -CCCCCEEECCCCCCCCCCCEEEEEEEECCCCEEEEEECCCEEEECHHHHHHHCCCCCCCCCCCCCCCCCCCEE
T ss_conf -4771207306555556785599999977998699998898078587883020178788887997776678378