HHsearch results for GI: 254780182 and protein with PDBid: 2nov_A
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A*
Probab=100.00 E-value=0 Score=1188.48 Aligned_cols=489 Identities=44% Similarity=0.749 Sum_probs=480.9
Q ss_pred CCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHCCCCCCCHHHH
Q ss_conf 35666009999987678777998863137540008973678999999987899999811340425566436688704789
Q gi|254780182|r 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93 (910)
Q Consensus 14 ~~i~~~~~~~~m~~syl~Ya~svI~~RAlPd~rDGlKpv~Rrily~m~~~~~~~~~~~~K~a~ivg~v~gkyHPHGd~si 93 (910)
.+|.+++|++.|.++|++||||||.+|||||++||||||||||||||++++++++++|+|||++||+|||+||||||+|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~ya~~~i~~RaiP~~~DGLKp~qRkiL~~~~~~~l~~~~~~~KvA~~~g~v~~~yHpHGe~Sl 81 (496)
T 2nov_A 2 SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSI 81 (496)
T ss_dssp ---------------------------CCCCTTTCCCHHHHHHHHHHHHTTCCTTSCCEEHHHHHHHHHHHTCCSCSTTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHCCCCCCHHHH
T ss_conf 98723669999999999888898661148842148848998999998862788898802426379988741588778899
Q ss_pred HHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEECCCCCCC
Q ss_conf 99999712201115613147887088776972013578999789999998630768405330689885485034322732
Q gi|254780182|r 94 YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173 (910)
Q Consensus 94 y~a~v~maq~~~~r~plidg~GnfGs~dgd~~AA~RYte~rl~~~~~~~l~~i~~~tv~~~~n~D~~~~EP~vlP~~~P~ 173 (910)
|+|+|+|||+||+|+||++|||||||++|++|||||||||||++++..++.++|.++|+|.+||||+..||+++|+.||+
T Consensus 82 ~~tiv~mAq~fsnn~~Ll~~~G~FGsr~~~~~Aa~RYi~~~l~~~~~~lf~~~d~~~~~~~~~~dg~~~EP~~y~piiP~ 161 (496)
T 2nov_A 82 YDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPN 161 (496)
T ss_dssp HHHHHHTTCTTTSSSCSEEEESCSCCSSSCCCCCTTTCEEEECHHHHTTSTTCCCCCSCEEECSSSSSEEESSCCCSSCH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCH
T ss_conf 99999997874247644037788788899704468889998888798752564423234655888862277000465758
Q ss_pred CHHCCCCCEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEE
Q ss_conf 11016761010133178985478999999887618776888888634586688744344758899998701203899998
Q gi|254780182|r 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253 (910)
Q Consensus 174 lL~nG~~GIAvGmaTnippHNl~Ev~~a~~~~i~~p~~~~~eL~~~i~GPDFPTGG~I~~~~~i~~~y~tGrG~i~iR~k 253 (910)
+||||++||||||||||||||+.|||+||+++|++|++++++||+++|||||||||+|.+.+++.++|++|+|+|++||+
T Consensus 162 vLvNG~~GIgtG~sT~IP~~Np~evi~~~~~~l~~~~~~~~~l~~~~~~pdfptGg~i~~~~~~~~~y~~g~G~i~~~~~ 241 (496)
T 2nov_A 162 LLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 241 (496)
T ss_dssp HHHHCEECCC-CCCCEECCCCHHHHHHHHHHHHHCTTCCHHHHTTTCCSCCCTTCCEECCHHHHHHHHHHSEEECCEECE
T ss_pred HHHCCCCCEEEEHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCEEECCHHHHHHHHCCCCEEEEEEE
T ss_conf 87547776242001057777889999999998509999989998637889899874554716679998569943999667
Q ss_pred EEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHCCH
Q ss_conf 86543367845999924644352899999999998716650144587303746557999947988778999999976101
Q gi|254780182|r 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333 (910)
Q Consensus 254 ~~ie~~~~~k~~ivItEiPY~vnk~~lie~Ia~lv~~~ki~gI~dirDeSdr~giRivielKr~~~~~~vln~Lyk~T~L 333 (910)
+++|..+.|+++|+||||||++++++++++|++|++++|+++|+|++|+|+++|+||||++|++.+++.++++|||+|+|
T Consensus 242 ~~~e~~~~~~~~i~ITELP~g~~t~~~~e~l~~l~~~~ki~~i~d~~Des~~~~v~i~I~lk~~~~~~~~~~~l~k~t~l 321 (496)
T 2nov_A 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLNYLFKYTDL 321 (496)
T ss_dssp EEEEECSTTCEEEEEEECCTTCCHHHHHHHTTHHHHTTSCC---CCEEC-----CCEEC----CCCCTTHHHHHHHSSTT
T ss_pred EEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHCEEE
T ss_conf 89997269834899997066565778999999876438767701214447888508999815322467789999861010
Q ss_pred HCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 10000002455416630002999999999999999999999999999888778999999874069999998618997898
Q gi|254780182|r 334 QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413 (910)
Q Consensus 334 q~sf~~N~~aL~~g~P~~l~Lk~iL~~fi~hR~evi~rRt~~~L~ka~~R~HILeGL~~Al~nIDeVI~iIR~S~d~~eA 413 (910)
|++|++||+++.+++|+.+++++||+.|++||.++++||.+|+|+++++|+|+|+|+++++++||++|.+||+|++.++|
T Consensus 322 ~st~~~n~~~~~~~~pk~~sv~eIL~~f~~~R~~~~~rR~~~~l~~~e~rl~il~~~~~fi~~i~~~i~~ir~~k~~~~~ 401 (496)
T 2nov_A 322 QINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA 401 (496)
T ss_dssp EECCEEECEEEETTEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHTTSSSHHHH
T ss_pred EEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 01056555555305884056999999989999999999999999999999999862899998565678888717987999
Q ss_pred HHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 78776312697889999974022111222344523699999999987899998887999999899999999988753049
Q gi|254780182|r 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493 (910)
Q Consensus 414 k~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~lSe~QA~AILdMrL~rLt~LE~~kl~~E~~eL~~~I~~l~~IL~s 493 (910)
+..|++. |+||+.||++||+|||++||++|++||++|+++|.++|++|++||+|
T Consensus 402 ~~~l~~~--------------------------f~lse~q~dyLL~M~L~~LT~~e~~kL~~E~~~l~~ei~~L~~il~~ 455 (496)
T 2nov_A 402 KENLKVS--------------------------YDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455 (496)
T ss_dssp HSSCCC---------------------------CCCCHHHHHHHHTCBGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH--------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999986--------------------------59999999999975899975899999999999999999999999689
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCC
Q ss_conf 89999999998999998405688331001343453
Q gi|254780182|r 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528 (910)
Q Consensus 494 ~~~l~~iI~~EL~eik~kygd~RRT~I~~~~~~i~ 528 (910)
++.+++++++||.+++++||+||||+|.+..++++
T Consensus 456 ~~~l~~~~~~eL~~l~~k~~~~RrT~i~~~~~~~~ 490 (496)
T 2nov_A 456 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKALE 490 (496)
T ss_dssp TTHHHHHHHHHHHHHHHHHCCCCCSBC--------
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf 99999999999999999838988860748676664