PSIBLAST alignment of GI: 254780182 and protein with PDB id: 2rgr

>gi|163931058|pdb|2RGR|A Chain A, Topoisomerase Iia Bound To G-Segment Dna Length = 759
 Score =  171 bits (434), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 87/506 (17%), Positives = 176/506 (34%), Gaps = 52/506 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + I+D +    + +++   + R+IP++ DG KP  R++L+G  +  +   K  +K A
Sbjct: 249 LKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNL---KSELKVA 304

Query: 76  RISGEVMG--KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAER 129
           +++  V     YH HG  ++   +  +AQ++  S  + L+   G FG+    G   AA R
Sbjct: 305 QLAPYVSECTAYH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAAR 363

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMAT 188
           Y    L K    +          +    D    EP   L    P +LVNG  GI  G +T
Sbjct: 364 YIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPI-LPMILVNGAEGIGTGWST 421

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            IP  N  E++     ++++ +++                    G TG        R   
Sbjct: 422 YIPPFNPLEIIKNIRHLMNDEELEQMHPWF-------------RGWTGTIEEIEPLR--Y 466

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
            + G             + +TE+P +   + + E +   +   +K    I D+ ++ D  
Sbjct: 467 RMYGRIE----QIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHD-D 521

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
             + +I L     A       Y    L S  S+  +       +      + +    F  
Sbjct: 522 NIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYY 581

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             +           + + H+   L   V      V+ I+         +EL   +   + 
Sbjct: 582 VRLEY-------YQKRKDHMSERLQWEVEKYSFQVKFIK-----MIIEKELTVTNKPRNA 629

Query: 427 IKDLIDLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
           I   ++ +    +           ++     I +++         +D  +        I 
Sbjct: 630 IIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVK---GATSDEEDEESSHEDTENVIN 686

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDE 511
              ++  +   LLG+    L   + +
Sbjct: 687 GPEELYGTYEYLLGMRIWSLTKERYQ 712