PSIBLAST alignment of GI: 254780182 and protein with PDB id: 2rgr
>gi|163931058|pdb|2RGR|A Chain A, Topoisomerase Iia Bound To G-Segment Dna Length = 759
Score = 171 bits (434), Expect = 4e-40, Method: Composition-based stats.
Identities = 87/506 (17%), Positives = 176/506 (34%), Gaps = 52/506 (10%)
Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
+ + I+D + + +++ + R+IP++ DG KP R++L+G + + K +K A
Sbjct: 249 LKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNL---KSELKVA 304
Query: 76 RISGEVMG--KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAER 129
+++ V YH HG ++ + +AQ++ S + L+ G FG+ G AA R
Sbjct: 305 QLAPYVSECTAYH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAAR 363
Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMAT 188
Y L K + + D EP L P +LVNG GI G +T
Sbjct: 364 YIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPI-LPMILVNGAEGIGTGWST 421
Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
IP N E++ ++++ +++ G TG R
Sbjct: 422 YIPPFNPLEIIKNIRHLMNDEELEQMHPWF-------------RGWTGTIEEIEPLR--Y 466
Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
+ G + +TE+P + + + E + + +K I D+ ++ D
Sbjct: 467 RMYGRIE----QIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHD-D 521
Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
+ +I L A Y L S S+ + + + + F
Sbjct: 522 NIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYY 581
Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
+ + + H+ L V V+ I+ +EL + +
Sbjct: 582 VRLEY-------YQKRKDHMSERLQWEVEKYSFQVKFIK-----MIIEKELTVTNKPRNA 629
Query: 427 IKDLIDLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
I ++ + + ++ I +++ +D + I
Sbjct: 630 IIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVK---GATSDEEDEESSHEDTENVIN 686
Query: 486 ECLDILSSRSRLLGIIKQELLSVKDE 511
++ + LLG+ L + +
Sbjct: 687 GPEELYGTYEYLLGMRIWSLTKERYQ 712