RPSBLAST alignment for GI: 254780182 and conserved domain: TIGR01062

>gnl|CDD|130134 TIGR01062, parC_Gneg, DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason. Length = 735
 Score =  463 bits (1192), Expect = e-130
 Identities = 250/715 (34%), Positives = 386/715 (53%), Gaps = 76/715 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++ + +  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  N KY K A
Sbjct: 1   IENIDLGNFTEEAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNANAKYKKSA 60

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG-DPPAAERYTECR 134
           R  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D     AA RYTE R
Sbjct: 61  RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL++LG+ TVDFRPN+DG+  EPV+L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 121 LSKISELLLEELGQGTVDFRPNFDGTLLEPVILPARLPNILLNGTTGIAVGMATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGV 253
           L E+ D  + +IDNP   LD ++ I++GPDFPT A I+     I+  Y TGRGS  +R  
Sbjct: 181 LHELADAALYLIDNPKAGLDDILNIVQGPDFPTEAEIIDKAEEIRKIYETGRGSFRMRAR 240

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              +K  G   QIV++ +P+Q++K+ ++E+IA  +++K++  I+D+RDESD +   RVVI
Sbjct: 241 --WKKEDG---QIVISALPHQISKSKVIEQIAIQMKDKKLPMISDIRDESDHENPIRVVI 295

Query: 313 ELK-RGASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREEVV 369
             +      D+++  L+  T L+  + +NM  + L+   P    L+ IL+ ++ FR   V
Sbjct: 296 VPRSNRVDPDIVMEHLFATTDLEKSYRLNMNMIGLDN-VPAVKNLLEILQEWLVFRRNTV 354

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +RR  Y LNK   R H+L GL IA  N+DEV+ IIR    P+T    LM+R         
Sbjct: 355 IRRLTYRLNKVLQRLHILEGLRIAFLNIDEVIEIIREEDEPKT---ILMER--------- 402

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS +Q  AIL LRL  L  L    I +E + L  E      
Sbjct: 403 -----------------FKLSAIQAEAILNLRLRHLAKLEEHAIIDEQSELEKERAILEK 445

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGY 547
           IL S   L  ++K+E+ +   +    RR+ + E      + + D I +E + + +S +G+
Sbjct: 446 ILKSERELNQLVKKEIQADATKYGLARRSSLEEREEAKQVSEIDMIPKEPVTIILSKMGW 505

Query: 548 VKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKE 601
           V            R  KG     S +  +  D  ++  I+   ++  V+F  S G  Y  
Sbjct: 506 V------------RSAKGHDIDLSTLKYKAGD--SEKAIIEGKSNQKVVFIDSTGRSYA- 550

Query: 602 KVWRLPIGSPQARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                P   P ARG+   L   L L  G  IT I+ +  ++       ++ A+  G    
Sbjct: 551 ---LDPDNLPSARGQGEPLTGKLLLPIGATITNILMYSPNQL------LLMASDAGYGFL 601

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAI 713
              +D I  N++GK  + L     +++      ++D++   T+ G+ + FPI  +
Sbjct: 602 CNFNDLIARNKAGKALINLPENASVIAPLPVNGDSDMIAAITEAGRMLVFPIDDL 656