RPSBLAST alignment for GI: 254780182 and conserved domain: TIGR01062
>gnl|CDD|130134 TIGR01062, parC_Gneg, DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason. Length = 735
Score = 463 bits (1192), Expect = e-130
Identities = 250/715 (34%), Positives = 386/715 (53%), Gaps = 76/715 (10%)
Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
I ++ + + + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+ N KY K A
Sbjct: 1 IENIDLGNFTEEAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNANAKYKKSA 60
Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG-DPPAAERYTECR 134
R G+V+GKYHPHG++A Y+A+ MAQ +S R L++GQGN+G+ D AA RYTE R
Sbjct: 61 RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESR 120
Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
L K + LL++LG+ TVDFRPN+DG+ EPV+L AR PN+L+NG GIAVGMAT+IP HN
Sbjct: 121 LSKISELLLEELGQGTVDFRPNFDGTLLEPVILPARLPNILLNGTTGIAVGMATDIPPHN 180
Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGV 253
L E+ D + +IDNP LD ++ I++GPDFPT A I+ I+ Y TGRGS +R
Sbjct: 181 LHELADAALYLIDNPKAGLDDILNIVQGPDFPTEAEIIDKAEEIRKIYETGRGSFRMRAR 240
Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
+K G QIV++ +P+Q++K+ ++E+IA +++K++ I+D+RDESD + RVVI
Sbjct: 241 --WKKEDG---QIVISALPHQISKSKVIEQIAIQMKDKKLPMISDIRDESDHENPIRVVI 295
Query: 313 ELK-RGASADVILNQLYRYTSLQSLFSVNM--VALNGYKPERFTLIGILKAFVAFREEVV 369
+ D+++ L+ T L+ + +NM + L+ P L+ IL+ ++ FR V
Sbjct: 296 VPRSNRVDPDIVMEHLFATTDLEKSYRLNMNMIGLDN-VPAVKNLLEILQEWLVFRRNTV 354
Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
+RR Y LNK R H+L GL IA N+DEV+ IIR P+T LM+R
Sbjct: 355 IRRLTYRLNKVLQRLHILEGLRIAFLNIDEVIEIIREEDEPKT---ILMER--------- 402
Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
LS +Q AIL LRL L L I +E + L E
Sbjct: 403 -----------------FKLSAIQAEAILNLRLRHLAKLEEHAIIDEQSELEKERAILEK 445
Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGY 547
IL S L ++K+E+ + + RR+ + E + + D I +E + + +S +G+
Sbjct: 446 ILKSERELNQLVKKEIQADATKYGLARRSSLEEREEAKQVSEIDMIPKEPVTIILSKMGW 505
Query: 548 VKRVPLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTS--VLFFSSLGFVYKE 601
V R KG S + + D ++ I+ ++ V+F S G Y
Sbjct: 506 V------------RSAKGHDIDLSTLKYKAGD--SEKAIIEGKSNQKVVFIDSTGRSYA- 550
Query: 602 KVWRLPIGSPQARGKA--LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
P P ARG+ L L L G IT I+ + ++ ++ A+ G
Sbjct: 551 ---LDPDNLPSARGQGEPLTGKLLLPIGATITNILMYSPNQL------LLMASDAGYGFL 601
Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAI 713
+D I N++GK + L +++ ++D++ T+ G+ + FPI +
Sbjct: 602 CNFNDLIARNKAGKALINLPENASVIAPLPVNGDSDMIAAITEAGRMLVFPIDDL 656