RPSBLAST alignment of GI: 254780182 and protein with PDBid: 1bjt

>1bjt_A Topoisomerase II; quaternary change, DNA-binding, DNA topology; 2.50A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 1bgw_A 2rgr_A* Length = 793

 Score =  273 bits (699), Expect = 1e-73
 Identities = 82/543 (15%), Positives = 173/543 (31%), Gaps = 56/543 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             +  + I+D +    + +++   + R+IP++ DG KP  R++L+G  +  ++   K  +
Sbjct: 257 PTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQ 315

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLR----LLLIEGQGNFGSVDGDPPAAER 129
            A    E     + HG  ++   +  +AQ++       LLL  G     +  G   AA R
Sbjct: 316 LAPYVSECTA--YHHGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAAR 373

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           Y    L K    +          +    + +  EP       P +LVNG  GI  G +T 
Sbjct: 374 YIYTELNKLTRKIFHPADDPLYKYIQEDEKT-VEPEWYLPILPMILVNGAEGIGTGWSTY 432

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP  N  E++     ++++ +++          P F         TG        R  + 
Sbjct: 433 IPPFNPLEIIKNIRHLMNDEELE-------QMHPWFRGW------TGTIEEIEPLRYRM- 478

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR-IVDIADLRDESDRQGY 308
                +          + +TE+P +   + + E +   +     I       +E      
Sbjct: 479 -----YGRIEQIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDDNI 533

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL---NGYKPERFTLIGILKAFVAFR 365
           + +I L     A       Y    L S  S+  +     +G   +  ++  IL  F   R
Sbjct: 534 KFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYYVR 593

Query: 366 EEVVVRRTKYLLNKARDRAHVL------------VGLAIAVANLDEVVRIIRFSPNPETA 413
            E   +R  ++  + +                    L +     + +++ +     P   
Sbjct: 594 LEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPRFN 653

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTI-----------GSDGTMYLSEVQTRAILELRL 462
           +           +I + I+ +  ++                             +L +R+
Sbjct: 654 KEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMRI 713

Query: 463 ARLTGLGRDDIRNELNSLGIEIKECLDILSSR--SRLLGIIKQELLSVKDELDTPRRTRI 520
             LT      +  +      E++  L + +    +  L   +             R   +
Sbjct: 714 WSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEARGGNV 773

Query: 521 VEG 523
              
Sbjct: 774 PNK 776