RPSBLAST alignment of GI: 254780182 and protein with PDBid: 2nov
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* Length = 496
Score = 481 bits (1240), Expect = e-136
Identities = 213/513 (41%), Positives = 317/513 (61%), Gaps = 26/513 (5%)
Query: 16 ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
I ++S+ D M + Y+ +I RA+PD+RDGLKPV RRIL+ M + ++K Y K A
Sbjct: 4 IQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSA 63
Query: 76 RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
+ G +MG +HPHG+++IYDA+ RM+Q+W R +L+E GN GS+DGDPPAA RYTE RL
Sbjct: 64 KSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARL 123
Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
+ A +LL D+ K TV F N+D + +EP VL A +PN+LVNG GI+ G AT+IP HNL
Sbjct: 124 SEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNL 183
Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
EV+D V +ID+P +D LME + GPDFPTGA+I GR IK AY TG+G +V+R +
Sbjct: 184 AEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTE 243
Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
IEK G +EQIV+TEIPY++NKA +++KI ++ ++ IA++RDESDR G R+ IELK
Sbjct: 244 IEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELK 303
Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
+ A+ +++LN L++YT LQ ++ NMVA++ + P + ++ IL +++A R EV++ R+++
Sbjct: 304 KDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRF 363
Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
KA R H++ GL ++ LDEV+ +IR S N A+ L
Sbjct: 364 DKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVS--------------- 408
Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
+E Q AI+ L+L RLT ++ E L +I I+
Sbjct: 409 -----------YDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDER 457
Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
+ ++K+EL VK + TPR + + + +E
Sbjct: 458 TMYNLMKKELREVKKKFATPRLSSLEDTAKALE 490