HHsearch alignment for GI: 254780183 and conserved domain: PRK02801
>PRK02801 primosomal replication protein N; Provisional.
Probab=98.59 E-value=1.2e-06 Score=60.04 Aligned_cols=98 Identities=16% Similarity=0.337 Sum_probs=75.0
Q ss_pred CCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEE--ECCCCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 83799996425886679869998699999983456420268845301124--3021101589877221104771599984
Q gi|254780183|r 5 LNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEW--HSVIVFSEELCRIVEQYLRKGSKVYIEG 82 (159)
Q Consensus 5 mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~--~~v~~~g~~~Ae~~~~~l~KG~~V~V~G 82 (159)
T Consensus 2 ~N~l~Lsg~v~~~~~lr~SPAGIp~~~f~LeH~S-~Q~EAg~---~Rqv~c~i~vv~~G~~-~~~~~~~l~~G~~v~v~G 76 (101)
T PRK02801 2 TNRLVLSGTVCRTPKRKVSPSGIPHCQFVLEHRS-VQEEAGF---LRQAWCQMPVIVSGHQ-FQAITQSITVGSEITVQG 76 (101)
T ss_pred CCEEEEEEEEEECCCEEECCCCCEEEEEEEEEEE-EEEECCC---CEEEEEEEEEEEEHHH-HHHHHHCCCCCCEEEEEE
T ss_conf 7489999999506731058997822899998778-8542798---2789999999996167-898750458998899999
Q ss_pred CCCCCCCCCCCCCEEEEEEEEEEEEEECC
Q ss_conf 13333320468837688999997769846
Q gi|254780183|r 83 SLQTRKWQDQSGNNRYTTEIIMRSMVMLD 111 (159)
Q Consensus 83 rl~~~~~~~kdG~~r~~~~V~a~~i~~l~ 111 (159)
T Consensus 77 FLa~~~--~rng~~--~LVLHa~~Ie~i~ 101 (101)
T PRK02801 77 FISCHK--GRNGLS--KLVLHAEQIELID 101 (101)
T ss_pred EEEECC--CCCCCC--CEEEEEEEEEECC
T ss_conf 984125--657874--3999902599819