HHsearch alignment for GI: 254780183 and conserved domain: PRK02801

>PRK02801 primosomal replication protein N; Provisional.
Probab=98.59  E-value=1.2e-06  Score=60.04  Aligned_cols=98  Identities=16%  Similarity=0.337  Sum_probs=75.0

Q ss_pred             CCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEE--ECCCCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf             83799996425886679869998699999983456420268845301124--3021101589877221104771599984
Q gi|254780183|r    5 LNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEW--HSVIVFSEELCRIVEQYLRKGSKVYIEG   82 (159)
Q Consensus         5 mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~--~~v~~~g~~~Ae~~~~~l~KG~~V~V~G   82 (159)
T Consensus         2 ~N~l~Lsg~v~~~~~lr~SPAGIp~~~f~LeH~S-~Q~EAg~---~Rqv~c~i~vv~~G~~-~~~~~~~l~~G~~v~v~G   76 (101)
T PRK02801          2 TNRLVLSGTVCRTPKRKVSPSGIPHCQFVLEHRS-VQEEAGF---LRQAWCQMPVIVSGHQ-FQAITQSITVGSEITVQG   76 (101)
T ss_pred             CCEEEEEEEEEECCCEEECCCCCEEEEEEEEEEE-EEEECCC---CEEEEEEEEEEEEHHH-HHHHHHCCCCCCEEEEEE
T ss_conf             7489999999506731058997822899998778-8542798---2789999999996167-898750458998899999


Q ss_pred             CCCCCCCCCCCCCEEEEEEEEEEEEEECC
Q ss_conf             13333320468837688999997769846
Q gi|254780183|r   83 SLQTRKWQDQSGNNRYTTEIIMRSMVMLD  111 (159)
Q Consensus        83 rl~~~~~~~kdG~~r~~~~V~a~~i~~l~  111 (159)
T Consensus        77 FLa~~~--~rng~~--~LVLHa~~Ie~i~  101 (101)
T PRK02801         77 FISCHK--GRNGLS--KLVLHAEQIELID  101 (101)
T ss_pred             EEEECC--CCCCCC--CEEEEEEEEEECC
T ss_conf             984125--657874--3999902599819