HHsearch alignment for GI: 254780183 and conserved domain: PRK07279
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed.
Probab=91.73 E-value=0.93 Score=24.85 Aligned_cols=78 Identities=17% Similarity=0.420 Sum_probs=52.1
Q ss_pred CEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 37999964258866798699986999999834564202688453011243021101589877221104771599984133
Q gi|254780183|r 6 NKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSLQ 85 (159)
Q Consensus 6 N~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl~ 85 (159)
T Consensus 885 ~~~~~~g~i~~-v~~~~tk~g~~maf~tl--------------eD~tg~ie~vvFp~~-y~~~~~~l~~~~~v~v~G~v~ 948 (1033)
T PRK07279 885 SEATILVQIQS-IRIIRTKTGQQMAFLSV--------------NDTKKKLDVTLFPET-YRQYKDELKEGKFYYLKGKIQ 948 (1033)
T ss_pred CCCEEEEEEEE-EEEEECCCCCEEEEEEE--------------EECCCCEEEEECHHH-HHHHHHHHCCCCEEEEEEEEE
T ss_conf 96279999988-89987798996999999--------------989986899986799-999999853598899999999
Q ss_pred CCCCCCCCCCEEEEEEEEEEEEE
Q ss_conf 33320468837688999997769
Q gi|254780183|r 86 TRKWQDQSGNNRYTTEIIMRSMV 108 (159)
Q Consensus 86 ~~~~~~kdG~~r~~~~V~a~~i~ 108 (159)
T Consensus 949 ~r-----~~~----~~li~~~i~ 962 (1033)
T PRK07279 949 ER-----DGR----LQMVLQQIQ 962 (1033)
T ss_pred EE-----CCE----EEEEHHHHH
T ss_conf 65-----998----999876412