HHsearch alignment for GI: 254780183 and conserved domain: PRK07373
>PRK07373 DNA polymerase III subunit alpha; Reviewed.
Probab=96.11 E-value=0.043 Score=32.80 Aligned_cols=81 Identities=19% Similarity=0.325 Sum_probs=54.5
Q ss_pred CEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 37999964258866798699986999999834564202688453011243021101589877221104771599984133
Q gi|254780183|r 6 NKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSLQ 85 (159)
Q Consensus 6 N~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl~ 85 (159)
T Consensus 279 ~~V~~~g~I~~-vr~~~TKkG~~MAfvtL--------------eD~tG~iEvvvFpe~ye~~-~~~L~~d~ivlv~Gkv~ 342 (447)
T PRK07373 279 TKVSAVVMLNG-VKKIVTKKGDPMAFLQL--------------EDLSGQSEAVVFPKSYERI-QELLQEDSRLIIWGKVD 342 (447)
T ss_pred CEEEEEEEEEE-EEEEECCCCCEEEEEEE--------------EECCCCEEEEEEHHHHHHH-HHHHCCCCEEEEEEEEE
T ss_conf 78999999999-99987048965999999--------------9789748999808999999-88733799899999999
Q ss_pred CCCCCCCCCCEEEEEEEEEEEEEECC
Q ss_conf 33320468837688999997769846
Q gi|254780183|r 86 TRKWQDQSGNNRYTTEIIMRSMVMLD 111 (159)
Q Consensus 86 ~~~~~~kdG~~r~~~~V~a~~i~~l~ 111 (159)
T Consensus 343 ~r-----d~~----~~liv~~i~~l~ 359 (447)
T PRK07373 343 RR-----DDQ----VQLIVEDAEPIE 359 (447)
T ss_pred EE-----CCC----EEEEEEECCCHH
T ss_conf 87-----893----789980035588