HHsearch alignment for GI: 254780183 and conserved domain: PRK07374
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated.
Probab=92.07 E-value=0.73 Score=25.48 Aligned_cols=79 Identities=14% Similarity=0.247 Sum_probs=51.5
Q ss_pred EEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 79999642588667986999869999998345642026884530112430211015898772211047715999841333
Q gi|254780183|r 7 KVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSLQT 86 (159)
Q Consensus 7 ~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl~~ 86 (159)
T Consensus 1003 ~v~v~g~v~~-~~~~~Tk~G~~maf~tl--------------eD~tg~~evvvFp~~-y~~~~~~l~~~~~l~v~G~v~~ 1066 (1171)
T PRK07374 1003 KVSVIAMIPE-MRQVTTRKGDRMAILQL--------------EDLTGSCEAVVFPKT-YARLSDHLMTDTRLLVWASVDR 1066 (1171)
T ss_pred EEEEEEEEEE-EEECCCCCCCEEEEEEE--------------EECCCCEEEEECHHH-HHHHHHHHCCCCEEEEEEEEEE
T ss_conf 8999999976-25267789996899999--------------989986899997899-9999998512987999999997
Q ss_pred CCCCCCCCCEEEEEEEEEEEEEEC
Q ss_conf 332046883768899999776984
Q gi|254780183|r 87 RKWQDQSGNNRYTTEIIMRSMVML 110 (159)
Q Consensus 87 ~~~~~kdG~~r~~~~V~a~~i~~l 110 (159)
T Consensus 1067 -----~~~----~~~li~~~~~~~ 1081 (1171)
T PRK07374 1067 -----RDD----RVQLIIDDCREI 1081 (1171)
T ss_pred -----ECC----EEEEEEHHHCCH
T ss_conf -----899----899995431259