HHsearch alignment for GI: 254780183 and conserved domain: PRK08486

Probab=100.00  E-value=3.1e-43  Score=277.77  Aligned_cols=111  Identities=41%  Similarity=0.625  Sum_probs=104.8

Q ss_pred             CCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf             83799996425886679869998699999983456420268845301124302110158987722110477159998413
Q gi|254780183|r    5 LNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSL   84 (159)
Q Consensus         5 mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl   84 (159)
T Consensus         2 ~NkViLvGrL~~DpElr~t~~G~~v~~f~lAv~r~~~~-~~Ge~~e~t~f~~v~~wg-k~AE~~~~yl~KGs~V~VeGrL   79 (180)
T PRK08486          2 FNKVILVGNLTRDVELRYLPSGSAIATIGLATSRRFKK-QDGEKGEEVCFIDIRLFG-RTAEIANQYLSKGSKVLIEGRL   79 (180)
T ss_pred             CEEEEEEEECCCCCEEEECCCCCEEEEEEEEECCCEEC-CCCCCCCCCEEEEEEECC-HHHHHHHHHCCCCCEEEEEEEE
T ss_conf             40699988568686388879998899999986686667-888780223699998816-7898887521899999999998


Q ss_pred             CCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCC
Q ss_conf             333320468837688999997769846677766
Q gi|254780183|r   85 QTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSL  117 (159)
Q Consensus        85 ~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~~~  117 (159)
T Consensus        80 ~~r~w~dkdG~~ry~teVv~d~~~fl~~k~~~~  112 (180)
T PRK08486         80 TFESWMDQNGQKRSKHTITAESMQMLDSKNDNQ  112 (180)
T ss_pred             ECCCCCCCCCCEEEEEEEEEEEEEEECCCCCCC
T ss_conf             846451579988999999996889804777777