HHsearch alignment for GI: 254780183 and conserved domain: PRK13480
>PRK13480 3'-5' exoribonuclease YhaM; Provisional.
Probab=92.29 E-value=0.18 Score=29.09 Aligned_cols=72 Identities=11% Similarity=0.207 Sum_probs=49.1
Q ss_pred ECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 25886679869998699999983456420268845301124302110158987722110477159998413333320468
Q gi|254780183|r 14 LGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSLQTRKWQDQS 93 (159)
Q Consensus 14 l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl~~~~~~~kd 93 (159)
T Consensus 19 lv~~~~~~~tknG~~Yl~l~L~------D--------~tG~I~ak~W~~--~~~~~~~~~~g~~V~v~G~v~--~y~--- 77 (314)
T PRK13480 19 LIKSATKGVASNGKPFLTLILQ------D--------KSGDIEAKLWDV--SKEDEATYVPETIVHVKGDII--NYR--- 77 (314)
T ss_pred EEEECHHHCCCCCCCEEEEEEE------C--------CCCEEEEEECCC--CHHHHHHCCCCCEEEEEEEEE--EEC---
T ss_conf 9987143318999814799998------3--------787688996789--866686378998899999998--768---
Q ss_pred CCEEEEEEEEEEEEEEC
Q ss_conf 83768899999776984
Q gi|254780183|r 94 GNNRYTTEIIMRSMVML 110 (159)
Q Consensus 94 G~~r~~~~V~a~~i~~l 110 (159)
T Consensus 78 g----~~Ql~i~~i~~~ 90 (314)
T PRK13480 78 G----RKQLKVNQIRLA 90 (314)
T ss_pred C----CCCEEEEEEEEC
T ss_conf 9----862588885767