HHsearch alignment for GI: 254780183 and conserved domain: TIGR00621
>TIGR00621 ssb single-strand binding protein; InterPro: IPR011344 All proteins in this family, for which functions are known, are single-stranded DNA-binding proteins that function in many processes including transcription, repair, replication and recombination. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). ; GO: 0003697 single-stranded DNA binding, 0006260 DNA replication.
Probab=99.98 E-value=8.2e-32 Score=209.76 Aligned_cols=111 Identities=46% Similarity=0.855 Sum_probs=104.3
Q ss_pred CCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 77837999964258866798699986999999834564202688453011243021101589877221104771599984
Q gi|254780183|r 3 ASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEG 82 (159)
Q Consensus 3 ~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~G 82 (159)
T Consensus 1 ~~~n~v~lvG~l~~dpe~ry~~~G~~v~~~~~a~~~~~~~~~~G~~~~~~~~~~~~~~~~~~ae~~~~yl~kG~~v~~eG 80 (180)
T TIGR00621 1 RGVNKVILVGRLGRDPELRYLPSGNAVANFTLATNRRWKDQDTGEWKEETEWHDIVLFGRGLAEVAGQYLKKGSLVYVEG 80 (180)
T ss_pred CCCCEEEEEECCCCCCEEEEECCCCEEEEEEEEECCEEECCCCCCCCCCEEEEEEEEECCHHHHHHHHHHCCCEEEEEEE
T ss_conf 98742788722688804777058971688885310102147777755330378888646514677876522450578720
Q ss_pred CCCCCCCCCCCCCEEEEEEEEEEEEEECCCC
Q ss_conf 1333332046883768899999776984667
Q gi|254780183|r 83 SLQTRKWQDQSGNNRYTTEIIMRSMVMLDGR 113 (159)
Q Consensus 83 rl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~ 113 (159)
T Consensus 81 ~l~~~~w~~~~G~~r~~~~i~~~~~~~~~~~ 111 (180)
T TIGR00621 81 RLRTRKWEDQNGQDRSKTEIVADNVQLLDLL 111 (180)
T ss_pred EEECCCCCCCCCCCEEEEEEEECCEEEEEEC
T ss_conf 1102210122687204678886220234323