HHsearch alignment for GI: 254780183 and conserved domain: cd04484
>cd04484 polC_OBF polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC). Replication in B. subtilis and Staphylococcus aureus requires two different polymerases, polC and DnaE. The holoenzyme is thought to include the two different polymerases. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=96.53 E-value=0.0081 Score=37.12 Aligned_cols=69 Identities=23% Similarity=0.345 Sum_probs=52.0
Q ss_pred EEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 79999642588667986999869999998345642026884530112430211015898772211047715999841333
Q gi|254780183|r 7 KVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSLQT 86 (159)
Q Consensus 7 ~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl~~ 86 (159)
T Consensus 1 nV~i~G~IF~-~E~relk~gk~i~~~~iT--------------D~t~Si~~K~F~~~~~~~~~~~~~~G~~v~v~G~v~~ 65 (82)
T cd04484 1 NVVVEGEVFD-LEIRELKSGRKILTFKVT--------------DYTSSITVKKFLRKDEKDKEELKSKGDWVRVRGKVQY 65 (82)
T ss_pred CEEEEEEEEE-EEEEECCCCCEEEEEEEE--------------ECCCCEEEEEEECCCHHHHHHHHCCCCEEEEEEEEEE
T ss_conf 9899999997-898972489899999998--------------0889799999835854445665258979999999963
Q ss_pred CCCC
Q ss_conf 3320
Q gi|254780183|r 87 RKWQ 90 (159)
Q Consensus 87 ~~~~ 90 (159)
T Consensus 66 D~f~ 69 (82)
T cd04484 66 DTFS 69 (82)
T ss_pred CCCC
T ss_conf 1787