HHsearch alignment for GI: 254780183 and conserved domain: cd04485
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=95.98 E-value=0.052 Score=32.30 Aligned_cols=77 Identities=22% Similarity=0.410 Sum_probs=55.2
Q ss_pred EEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCC
Q ss_conf 99642588667986999869999998345642026884530112430211015898772211047715999841333332
Q gi|254780183|r 10 LIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSLQTRKW 89 (159)
Q Consensus 10 l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl~~~~~ 89 (159)
T Consensus 2 iaG-~I~~~k~~~tk~G~~~a~~tle--------------D~~g~~e~~~F~~~~-~~~~~~l~~~~~v~i~g~v~~~~- 64 (84)
T cd04485 2 VAG-LVTSVRRRRTKKGKRMAFVTLE--------------DLTGSIEVVVFPETY-EKYRDLLKEDALLLVEGKVERRD- 64 (84)
T ss_pred EEE-EEEEEEEEECCCCCEEEEEEEE--------------CCCCCEEEEECHHHH-HHHHHHHCCCCEEEEEEEEEEEC-
T ss_conf 899-9999899855799989999994--------------378749999969999-99888744698899999999969-
Q ss_pred CCCCCCEEEEEEEEEEEEEECC
Q ss_conf 0468837688999997769846
Q gi|254780183|r 90 QDQSGNNRYTTEIIMRSMVMLD 111 (159)
Q Consensus 90 ~~kdG~~r~~~~V~a~~i~~l~ 111 (159)
T Consensus 65 ----~----~~~l~~~~i~~l~ 78 (84)
T cd04485 65 ----G----GLRLIAERIEDLE 78 (84)
T ss_pred ----C----EEEEEEEEEEEHH
T ss_conf ----9----8999999946789