HHsearch alignment of GI: 254780183 and MMDB domain: 3dm3_A_

>3dm3_A (A:) Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=91.04  E-value=1.1  Score=24.02  Aligned_cols=64  Identities=14%  Similarity=0.091  Sum_probs=43.5

Q ss_pred             CEEEEEEEECCCC--EEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEE-
Q ss_conf             3799996425886--6798699986999999834564202688453011243021101589877221104771599984-
Q gi|254780183|r    6 NKVILIGNLGADP--DVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEG-   82 (159)
Q Consensus         6 N~v~l~G~l~~dP--elr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~G-   82 (159)
                      ..|.++|.+.+--  ....+.+|.....+.+-+            .|.|..+.+++|+.+ +.   ..++.|+.|.+.| 
T Consensus        15 ~~v~v~g~V~~~~~~~~~~~~~g~~~~~~~~~i------------~D~Tg~i~~t~w~~~-~~---~~l~~g~~v~i~g~   78 (105)
T 3dm3_A           15 MTATFEGEVISALPIKEFKRADGSIGKLKSFIV------------RDETGSIRVTLWDNL-TD---IDVGRGDYVRVRGY   78 (105)
T ss_dssp             EEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEE------------EETTEEEEEEEEGGG-GG---SCCCTTCEEEEEEE
T ss_pred             CEEEEEEEEEECCCCEEEECCCCCEEEEEEEEE------------ECCCCEEEEEEECCC-CC---CCCCCCCEEEEEEE
T ss_conf             858999999982587479926998889999999------------849981999996352-22---55899999999708


Q ss_pred             CCC
Q ss_conf             133
Q gi|254780183|r   83 SLQ   85 (159)
Q Consensus        83 rl~   85 (159)
                      ++.
T Consensus        79 ~v~   81 (105)
T 3dm3_A           79 IRE   81 (105)
T ss_dssp             EEE
T ss_pred             EEC
T ss_conf             973