HHsearch alignment of GI: 254780183 and MMDB domain: 3fhw_A_
>3fhw_A (A:) Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein structure initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=99.93 E-value=2.4e-25 Score=170.88 Aligned_cols=108 Identities=12% Similarity=0.102 Sum_probs=94.1
Q ss_pred CCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 83799996425886679869998699999983456420268845301124302110158987722110477159998413
Q gi|254780183|r 5 LNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSL 84 (159)
Q Consensus 5 mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl 84 (159)
.|+|+|+|||++||++|++++|.++++|+||+++++++..+ +.+.|+||+|++||+ +|+++ .+|+||++|+|+|+|
T Consensus 1 ~N~v~l~G~i~~dp~~~~t~~G~~~~~f~la~~~~~~~~~~--~~~~t~~~~v~~~g~-~A~~~-~~l~kG~~V~V~G~l 76 (115)
T 3fhw_A 1 XNTLELSARVLECGAXRHTPAGLPALELLLVHESEVVEAGH--PRRVELTISAVALGD-LALLL-ADTPLGTEXQVQGFL 76 (115)
T ss_dssp CEEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEECCCCC----CEEEEEEEEEEETH-HHHHH-TTCCTTCEEEEEEEE
T ss_pred CCEEEEEEEECCCCCEEECCCCCEEEEEEEEECCEEECCCC--CCCEEEEEEEEEEHH-HHHHH-HHCCCCCEEEEEEEE
T ss_conf 97899999987686388989997789999993201204887--353449999999948-82320-413799999999996
Q ss_pred CCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCC
Q ss_conf 33332046883768899999776984667776666777
Q gi|254780183|r 85 QTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSLQGEEQ 122 (159)
Q Consensus 85 ~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~~~~~~~~ 122 (159)
..++|++++| +|.|+.|+||+++.........
T Consensus 77 ~~~~~~~~~g------~i~~~~i~~l~~~~~~~~~~~~ 108 (115)
T 3fhw_A 77 APARKDSVKV------KLHLQQARRIAGSXGRDPLVGL 108 (115)
T ss_dssp EESSTTCSSE------EEEEEEEEECCCSCCC------
T ss_pred CCCCCCCCCE------EEEEEEEEEECCCCCCCCCCCC
T ss_conf 5266889836------9998999992688899987532