HHsearch alignment of GI: 254780183 and MMDB domain: 3fhw_A_

>3fhw_A (A:) Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein structure initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=99.93  E-value=2.4e-25  Score=170.88  Aligned_cols=108  Identities=12%  Similarity=0.102  Sum_probs=94.1

Q ss_pred             CCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf             83799996425886679869998699999983456420268845301124302110158987722110477159998413
Q gi|254780183|r    5 LNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSL   84 (159)
Q Consensus         5 mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl   84 (159)
                      .|+|+|+|||++||++|++++|.++++|+||+++++++..+  +.+.|+||+|++||+ +|+++ .+|+||++|+|+|+|
T Consensus         1 ~N~v~l~G~i~~dp~~~~t~~G~~~~~f~la~~~~~~~~~~--~~~~t~~~~v~~~g~-~A~~~-~~l~kG~~V~V~G~l   76 (115)
T 3fhw_A            1 XNTLELSARVLECGAXRHTPAGLPALELLLVHESEVVEAGH--PRRVELTISAVALGD-LALLL-ADTPLGTEXQVQGFL   76 (115)
T ss_dssp             CEEEEEEEEEEEECCCEECTTSCEEEEEEEEEEEECCCCC----CEEEEEEEEEEETH-HHHHH-TTCCTTCEEEEEEEE
T ss_pred             CCEEEEEEEECCCCCEEECCCCCEEEEEEEEECCEEECCCC--CCCEEEEEEEEEEHH-HHHHH-HHCCCCCEEEEEEEE
T ss_conf             97899999987686388989997789999993201204887--353449999999948-82320-413799999999996


Q ss_pred             CCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCC
Q ss_conf             33332046883768899999776984667776666777
Q gi|254780183|r   85 QTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSLQGEEQ  122 (159)
Q Consensus        85 ~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~~~~~~~~  122 (159)
                      ..++|++++|      +|.|+.|+||+++.........
T Consensus        77 ~~~~~~~~~g------~i~~~~i~~l~~~~~~~~~~~~  108 (115)
T 3fhw_A           77 APARKDSVKV------KLHLQQARRIAGSXGRDPLVGL  108 (115)
T ss_dssp             EESSTTCSSE------EEEEEEEEECCCSCCC------
T ss_pred             CCCCCCCCCE------EEEEEEEEEECCCCCCCCCCCC
T ss_conf             5266889836------9998999992688899987532