HHsearch alignment of GI: 254780183 and MMDB domain: 3koj_A_

>3koj_A (A:) Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=99.94  E-value=2.5e-26  Score=176.73  Aligned_cols=101  Identities=18%  Similarity=0.264  Sum_probs=92.9

Q ss_pred             CC-CCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf             98-77837999964258866798699986999999834564202688453011243021101589877221104771599
Q gi|254780183|r    1 MV-ASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVY   79 (159)
Q Consensus         1 mm-~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~   79 (159)
                      || .++|+|+|+|||++||++|++++|..++.|++++++++.      +++.++||+|++||+ +|+++++||+||++|+
T Consensus         6 ~~~~~~N~v~l~G~l~~dp~~~~t~~g~~~~~~~~~~~~~~~------~~~~~~~i~v~~wg~-~Ae~~~~~l~KG~~V~   78 (108)
T 3koj_A            6 HHHSHXNSCILQATVVEAPQLRYAQDNQTPVAEXVVQFPGLS------SKDAPARLKVVGWGA-VAQELQDRCRLNDEVV   78 (108)
T ss_dssp             -CCSSCEEEEEEEEEEEEEEEEECTTSSSEEEEEEEEECC-----------CCEEEEEEEETH-HHHHHHHHCCTTCEEE
T ss_pred             CCHHHCCEEEEEEEECCCCEEEECCCCCEEEEEEEEEECCCC------CCCCCEEEEEEEEHH-HHHHHHHHCCCCCEEE
T ss_conf             554228999999998779768882899879999999968984------578976999999789-9999998608999999


Q ss_pred             EEECCCCCCCCCCCCCEEEEEEEEEEEEE
Q ss_conf             98413333320468837688999997769
Q gi|254780183|r   80 IEGSLQTRKWQDQSGNNRYTTEIIMRSMV  108 (159)
Q Consensus        80 V~Grl~~~~~~~kdG~~r~~~~V~a~~i~  108 (159)
                      |+|+|+.++|+++||++++.++|+|++|.
T Consensus        79 V~G~l~~~~~~~~dG~~~~~~~i~a~~i~  107 (108)
T 3koj_A           79 LEGRLRINSLLKPDGNREKQTELTVTRVH  107 (108)
T ss_dssp             EEEEEEEEC--------CCEEEEEEEEEE
T ss_pred             EEEEEECEEEECCCCCEEEEEEEEEEECC
T ss_conf             99998780789999989999999999716