HHsearch results for GI: 254780183 and protein with PDBid: 3koj_A
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=99.94 E-value=9.6e-27 Score=178.29 Aligned_cols=98 Identities=17% Similarity=0.302 Sum_probs=89.6
Q ss_pred CCCCEEEEEEEECCCCEEEECCCCC-EEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 7783799996425886679869998-699999983456420268845301124302110158987722110477159998
Q gi|254780183|r 3 ASLNKVILIGNLGADPDVRHTQDGR-KIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIE 81 (159)
Q Consensus 3 ~~mN~v~l~G~l~~dPelr~~~~g~-~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~ 81 (159)
++||+|+|+|||++|||||+|++|. +++.|++++++.+. ++.++|++|++||+ +||.++++|+||++|+|+
T Consensus 9 s~MN~v~l~G~l~~dPElr~T~~g~~~v~~~~v~~~~~~~-------~~~~~~i~v~~wg~-~Ae~~~~~l~kG~~V~V~ 80 (108)
T 3koj_A 9 SHMNSCILQATVVEAPQLRYAQDNQTPVAEMVVQFPGLSS-------KDAPARLKVVGWGA-VAQELQDRCRLNDEVVLE 80 (108)
T ss_dssp SSCEEEEEEEEEEEEEEEEECTTSSSEEEEEEEEECC------------CCEEEEEEEETH-HHHHHHHHCCTTCEEEEE
T ss_pred HHCCEEEEEEEECCCCEEEEECCCCEEEEEEEEEECCCCC-------CCCCEEEEEEEEHH-HHHHHHHHCCCCCEEEEE
T ss_conf 1279999999987896799967998899999999679845-------78977999999889-999999860899999999
Q ss_pred ECCCCCCCCCCCCCEEEEEEEEEEEEE
Q ss_conf 413333320468837688999997769
Q gi|254780183|r 82 GSLQTRKWQDQSGNNRYTTEIIMRSMV 108 (159)
Q Consensus 82 Grl~~~~~~~kdG~~r~~~~V~a~~i~ 108 (159)
|+|+.++|+++||++++.++|+|+.|.
T Consensus 81 G~l~~~~~~~kdG~k~~~~ei~a~~i~ 107 (108)
T 3koj_A 81 GRLRINSLLKPDGNREKQTELTVTRVH 107 (108)
T ss_dssp EEEEEEC--------CCEEEEEEEEEE
T ss_pred EEEECEEEECCCCCEEEEEEEEEEECC
T ss_conf 998772889999989999999998705