HHSEARCH alignment of GI: 254780183 and SCOP domain: d1qvca_

Alignment
>d1qvca_ b.40.4.3 (A:) ssDNA-binding protein {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=7.9e-35  Score=225.02  Aligned_cols=114  Identities=54%  Similarity=1.011  Sum_probs=105.1

Q ss_pred             CCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             87783799996425886679869998699999983456420268845301124302110158987722110477159998
Q gi|254780183|r    2 VASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIE   81 (159)
Q Consensus         2 m~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~   81 (159)
                      ..+||+|+|+|||++|||+|++++|.++++|+||++++|+++.+++|++.|+||+|++|++ +|+++.+||+||++|+|+
T Consensus         2 ~~~mN~v~LiG~l~~dpe~r~~~~G~~v~~f~va~~~~~~~~~~~~~~~~t~w~~v~~~g~-~Ae~~~~~l~KG~~V~V~   80 (145)
T d1qvca_           2 SRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGK-LAEVASEYLRKGSQVYIE   80 (145)
T ss_dssp             CCCEEEEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETH-HHHHHHHHCCTTCEEEEE
T ss_pred             CCCCEEEEEEEECCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECC-HHHHHHHHCCCCCEEEEE
T ss_conf             8760299999988879889888999989999987244534456544323404772587320-145676540357789999


Q ss_pred             ECCCCCCCCCCCCCEEEEEEEEEE---EEEECCCCCCC
Q ss_conf             413333320468837688999997---76984667776
Q gi|254780183|r   82 GSLQTRKWQDQSGNNRYTTEIIMR---SMVMLDGRRDS  116 (159)
Q Consensus        82 Grl~~~~~~~kdG~~r~~~~V~a~---~i~~l~~~~~~  116 (159)
                      |+|++++|+++||++|+.++|+|+   .+.+|.++...
T Consensus        81 G~l~~~~~~~kdG~~r~~~ei~~~~~~~l~~l~~r~~~  118 (145)
T d1qvca_          81 GQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGG  118 (145)
T ss_dssp             EEEEEEEECSSSSCEEEEEEEECTTCEEEECCCCSCCC
T ss_pred             EEEEEEEEECCCCCEEEEEEEEEECCCCEEECCCCCCC
T ss_conf             98877345879999899999999237857898676677


SCOP domain information

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: ssDNA-binding protein
species: Escherichia coli [TaxId: 562]