HHSEARCH alignment of GI: 254780183 and SCOP domain: d1v1qa_

Alignment
>d1v1qa_ b.40.4.3 (A:) Primosomal replication protein N, PriB {Escherichia coli [TaxId: 562]}
Probab=99.93  E-value=3.5e-26  Score=173.54  Aligned_cols=106  Identities=14%  Similarity=0.223  Sum_probs=92.5

Q ss_pred             CCCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf             98778379999642588667986999869999998345642026884530112430211015898772211047715999
Q gi|254780183|r    1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYI   80 (159)
Q Consensus         1 mm~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V   80 (159)
                      ||  +|+|+|+|+|++|||+|+|++|.++++|+||+++.++  ..+++++.+.|++|++||+ +|+.+++||+||++|+|
T Consensus         4 mm--~N~v~L~G~l~~dpelr~T~~G~~v~~f~la~~~~~~--e~~~~r~~~~~i~vv~~g~-~Ae~~~~~l~kG~~v~v   78 (111)
T d1v1qa_           4 LM--TNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQE--EAGFHRQAWCQMPVIVSGH-ENQAITHSITVGSRITV   78 (111)
T ss_dssp             GC--CEEEEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEE--ETTEEEEEEEEEEEEEEST-GGGGGGTTCCTTCEEEE
T ss_pred             CC--EEEEEEEEEECCCCCEEECCCCCEEEEEEEEECCEEE--CCCCEEEEEEEEEEEEECH-HHHHHHHHHCCCCEEEE
T ss_conf             53--6799999996688646788999789999998130773--1665078889997899689-99999987258999999


Q ss_pred             EECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCC
Q ss_conf             84133333204688376889999977698466777
Q gi|254780183|r   81 EGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRD  115 (159)
Q Consensus        81 ~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~  115 (159)
                      +|+|..++|.+  |+.+  +.|.|++|+||+++..
T Consensus        79 ~G~L~~~~~~~--~~~r--~v~~a~~ie~l~s~~~  109 (111)
T d1v1qa_          79 QGFISCHKAKN--GLSK--MVLHAEQIELIDSVDK  109 (111)
T ss_dssp             EEEEEEECTTT--TSCE--EEEEEEEEEETTSCSC
T ss_pred             EEEEEEECCCC--CCCE--EEEEEEEEEEECCCCC
T ss_conf             99987702628--9977--9999999999517775


SCOP domain information

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Single strand DNA-binding domain, SSB
domain: Primosomal replication protein N, PriB
species: Escherichia coli [TaxId: 562]