Query gi|254780183|ref|YP_003064596.1| single-strand binding protein (ssb) [Candidatus Liberibacter asiaticus str. psy62] Match_columns 159 No_of_seqs 107 out of 2718 Neff 8.4 Searched_HMMs 13730 Date Mon May 23 10:45:24 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780183.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1qvca_ b.40.4.3 (A:) ssDNA-bi 100.0 7.9E-35 5.8E-39 225.0 14.8 114 2-116 2-118 (145) 2 d3ulla_ b.40.4.3 (A:) ssDNA-bi 100.0 2.1E-34 1.5E-38 222.5 10.6 110 1-110 1-115 (115) 3 d1se8a_ b.40.4.3 (A:) ssDNA-bi 100.0 3.2E-33 2.3E-37 215.5 11.9 120 3-124 1-121 (231) 4 d1se8a_ b.40.4.3 (A:) ssDNA-bi 100.0 9.3E-32 6.8E-36 206.7 11.9 109 1-112 123-231 (231) 5 d1ue1a_ b.40.4.3 (A:) ssDNA-bi 100.0 1.9E-30 1.4E-34 199.0 13.0 106 4-110 1-107 (118) 6 d1v1qa_ b.40.4.3 (A:) Primosom 99.9 3.5E-26 2.5E-30 173.5 10.9 106 1-115 4-109 (111) 7 d1eova1 b.40.4.1 (A:71-204) As 90.9 0.46 3.4E-05 23.9 8.4 45 69-114 87-131 (134) 8 d1jmca1 b.40.4.3 (A:183-298) R 90.5 0.3 2.2E-05 25.1 5.7 68 3-85 10-80 (116) 9 d1o7ia_ b.40.4.3 (A:) Archaeal 87.6 0.56 4.1E-05 23.5 5.4 77 3-106 10-89 (115) 10 d1b8aa1 b.40.4.1 (A:1-103) Asp 82.7 1.4 0.0001 21.1 8.3 81 6-113 17-101 (103) 11 d2pi2a1 b.40.4.3 (A:44-171) Re 74.4 2.5 0.00019 19.5 5.1 78 5-111 28-107 (128) 12 d1l0wa1 b.40.4.1 (A:1-104) Asp 70.1 3.2 0.00023 18.9 7.3 83 7-113 18-103 (104) 13 d1e1oa1 b.40.4.1 (A:11-153) Ly 66.6 3.8 0.00028 18.5 9.6 83 7-113 56-138 (143) 14 d1gm5a2 b.40.4.9 (A:106-285) R 65.7 4 0.00029 18.4 4.3 65 7-90 62-128 (180) 15 d1c0aa1 b.40.4.1 (A:1-106) Asp 61.8 4.7 0.00034 18.0 8.7 87 6-113 16-105 (106) 16 d1ltla_ b.40.4.11 (A:) DNA rep 38.7 11 0.00081 15.7 3.5 49 54-110 191-239 (239) 17 d1jb7a1 b.40.4.3 (A:36-204) Te 35.1 13 0.00092 15.4 4.9 83 6-92 15-98 (169) 18 d1n9wa1 b.40.4.1 (A:1-93) Aspa 27.4 17 0.0012 14.6 8.9 73 7-113 15-88 (93) 19 d1vqoj1 c.21.1.1 (J:4-145) Rib 24.3 18 0.0013 14.5 1.9 22 59-81 15-36 (142) 20 d1jmca2 b.40.4.3 (A:299-420) R 22.5 21 0.0015 14.1 6.9 68 7-90 18-89 (122) 21 d1j3aa_ c.21.1.1 (A:) Ribosoma 21.0 23 0.0017 13.9 2.0 22 59-81 10-31 (142) No 1 >d1qvca_ b.40.4.3 (A:) ssDNA-binding protein {Escherichia coli [TaxId: 562]} Probab=100.00 E-value=7.9e-35 Score=225.02 Aligned_cols=114 Identities=54% Similarity=1.011 Sum_probs=105.1 Q ss_pred CCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEE Q ss_conf 87783799996425886679869998699999983456420268845301124302110158987722110477159998 Q gi|254780183|r 2 VASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIE 81 (159) Q Consensus 2 m~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~ 81 (159) ..+||+|+|+|||++|||+|++++|.++++|+||++++|+++.+++|++.|+||+|++|++ +|+++.+||+||++|+|+ T Consensus 2 ~~~mN~v~LiG~l~~dpe~r~~~~G~~v~~f~va~~~~~~~~~~~~~~~~t~w~~v~~~g~-~Ae~~~~~l~KG~~V~V~ 80 (145) T d1qvca_ 2 SRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGK-LAEVASEYLRKGSQVYIE 80 (145) T ss_dssp CCCEEEEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETH-HHHHHHHHCCTTCEEEEE T ss_pred CCCCEEEEEEEECCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECC-HHHHHHHHCCCCCEEEEE T ss_conf 8760299999988879889888999989999987244534456544323404772587320-145676540357789999 Q ss_pred ECCCCCCCCCCCCCEEEEEEEEEE---EEEECCCCCCC Q ss_conf 413333320468837688999997---76984667776 Q gi|254780183|r 82 GSLQTRKWQDQSGNNRYTTEIIMR---SMVMLDGRRDS 116 (159) Q Consensus 82 Grl~~~~~~~kdG~~r~~~~V~a~---~i~~l~~~~~~ 116 (159) |+|++++|+++||++|+.++|+|+ .+.+|.++... T Consensus 81 G~l~~~~~~~kdG~~r~~~ei~~~~~~~l~~l~~r~~~ 118 (145) T d1qvca_ 81 GQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGG 118 (145) T ss_dssp EEEEEEEECSSSSCEEEEEEEECTTCEEEECCCCSCCC T ss_pred EEEEEEEEECCCCCEEEEEEEEEECCCCEEECCCCCCC T ss_conf 98877345879999899999999237857898676677 No 2 >d3ulla_ b.40.4.3 (A:) ssDNA-binding protein {Human (Homo sapiens), mitochondria [TaxId: 9606]} Probab=100.00 E-value=2.1e-34 Score=222.48 Aligned_cols=110 Identities=31% Similarity=0.635 Sum_probs=104.2 Q ss_pred CCCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCC-----CCEEECEEEECCCCCHHHHHHHHHHHCCCC Q ss_conf 987783799996425886679869998699999983456420268-----845301124302110158987722110477 Q gi|254780183|r 1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVT-----NERREKTEWHSVIVFSEELCRIVEQYLRKG 75 (159) Q Consensus 1 mm~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~-----~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG 75 (159) |+.+||+|+|+|||++|||+|++++|.++++|+||++++|++..+ ++|.+.|+||+|++||+.+|+++.+||+|| T Consensus 1 ~~~~mN~V~L~G~l~~dpe~r~t~~G~~v~~f~vAv~~~~~~~~~~~~~~g~~~~~t~w~~v~~~g~~~a~~~~~~l~KG 80 (115) T d3ulla_ 1 LERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKG 80 (115) T ss_dssp CCCCEEEEEEEEEECSCCEEECCTTSCCEEEEEEEEEEEECC---------CCEEEEEEEEEEECSTTHHHHHHHHCCTT T ss_pred CCCCEEEEEEEEECCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCHHHHHHCCCC T ss_conf 98732699999988889899991899889999997066411666651213320352003511234111102245315578 Q ss_pred CEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEEC Q ss_conf 15999841333332046883768899999776984 Q gi|254780183|r 76 SKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVML 110 (159) Q Consensus 76 ~~V~V~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l 110 (159) ++|+|+|+|++++|+++||++|+.++|+|++|.|| T Consensus 81 ~~V~V~Grl~~~~~~dkdG~~r~~~~v~a~~i~~L 115 (115) T d3ulla_ 81 SRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFL 115 (115) T ss_dssp CEEEEEEEEECCCEESSSSEECCCEEEEEEEEECC T ss_pred CEEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEC T ss_conf 79999987710358989998999999999999959 No 3 >d1se8a_ b.40.4.3 (A:) ssDNA-binding protein {Deinococcus radiodurans [TaxId: 1299]} Probab=100.00 E-value=3.2e-33 Score=215.46 Aligned_cols=120 Identities=24% Similarity=0.409 Sum_probs=103.2 Q ss_pred CCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHH-HHCCCCCEEEEE Q ss_conf 7783799996425886679869998699999983456420268845301124302110158987722-110477159998 Q gi|254780183|r 3 ASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVE-QYLRKGSKVYIE 81 (159) Q Consensus 3 ~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~-~~l~KG~~V~V~ 81 (159) .+||+|+|+|||++|||+|++++|.++++|+||++++|+++. +++++.|+||+|++||+ +|++++ .||+||++|+|+ T Consensus 1 r~mN~v~l~G~l~~dpe~r~t~~G~~~~~f~lA~~~~~~~~~-g~~~~~t~~~~v~~~g~-~Ae~~~~~~l~KG~~V~V~ 78 (231) T d1se8a_ 1 RGMNHVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIGND-GRERNLPWYHRVSILGK-PAEWQAERNLKGGDAVVVE 78 (231) T ss_dssp CCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEC--------CEEEEEEEEEEESH-HHHHHHHTCCCTTCEEEEE T ss_pred CCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCEECCC-CCEEEEEEEEEEEEECC-HHHHHHHHCCCCCCEEEEE T ss_conf 984499999997769889987999889999999789678799-87986200566888670-4655023116899999999 Q ss_pred ECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCC Q ss_conf 4133333204688376889999977698466777666677777 Q gi|254780183|r 82 GSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSLQGEEQRS 124 (159) Q Consensus 82 Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~~~~~~~~~~ 124 (159) |+|+.++|+++||++|+.++|+|++|.||+++..........+ T Consensus 79 G~l~~~~~~~~dG~~r~~~~i~a~~v~~l~~~~~~~~~~~~~~ 121 (231) T d1se8a_ 79 GTLEYRQWEAPEGGKRSAVNVKALRMEQLGTQPELIQDAGGGV 121 (231) T ss_dssp EEEEEEEEC-----CEEEEEEEEEEEEECSSCCCEEECTTSCE T ss_pred EEEEEEEEECCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCC T ss_conf 9978503699999899999999999999358721133544554 No 4 >d1se8a_ b.40.4.3 (A:) ssDNA-binding protein {Deinococcus radiodurans [TaxId: 1299]} Probab=99.97 E-value=9.3e-32 Score=206.73 Aligned_cols=109 Identities=30% Similarity=0.600 Sum_probs=102.3 Q ss_pred CCCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEE Q ss_conf 98778379999642588667986999869999998345642026884530112430211015898772211047715999 Q gi|254780183|r 1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYI 80 (159) Q Consensus 1 mm~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V 80 (159) |+.+||+|+|+|||++|||+|++++|.++|+|+||++++|+++. ++|+++|+||+|++||+ +|++++ +|+||++|+| T Consensus 123 m~~~~N~v~l~G~l~~dpe~r~t~~G~~~~~f~va~~~~~~~~~-g~~~~~t~~~~v~~~g~-~Ae~~~-~l~KG~~V~V 199 (231) T d1se8a_ 123 MSGAMNEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQ-GQRQEKVHYIDATLWRD-LAENMK-ELRKGDPVMI 199 (231) T ss_dssp EETCEEEEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTT-SCEEEEEEEEEEEEETH-HHHHHT-TCCTTCEEEE T ss_pred CCCCCEEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCEECCC-CCEEEEEEEEEEEECCC-HHHHHH-HCCCCCEEEE T ss_conf 11243018999993898499997899889999999779749898-96615337877675370-777765-3799799999 Q ss_pred EECCCCCCCCCCCCCEEEEEEEEEEEEEECCC Q ss_conf 84133333204688376889999977698466 Q gi|254780183|r 81 EGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDG 112 (159) Q Consensus 81 ~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~ 112 (159) +|+|++++|+++||++|+.++|+|++|.||+. T Consensus 200 ~G~l~~~~~~~kdG~~r~~~~i~a~~v~~L~r 231 (231) T d1se8a_ 200 MGRLVNEGWTDKDGNKRNSTRVEATRVEALAR 231 (231) T ss_dssp EEEEEEEECC------CEEEEEEEEEEEECCC T ss_pred EEEEEECEEECCCCCEEEEEEEEEEEEEECCC T ss_conf 99968250799999799999999999998059 No 5 >d1ue1a_ b.40.4.3 (A:) ssDNA-binding protein {Mycobacterium tuberculosis [TaxId: 1773]} Probab=99.97 E-value=1.9e-30 Score=198.97 Aligned_cols=106 Identities=25% Similarity=0.460 Sum_probs=99.9 Q ss_pred CCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEE-CEEEECCCCCHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 78379999642588667986999869999998345642026884530-11243021101589877221104771599984 Q gi|254780183|r 4 SLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERRE-KTEWHSVIVFSEELCRIVEQYLRKGSKVYIEG 82 (159) Q Consensus 4 ~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d-~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~G 82 (159) ..|+|+|+|||++|||+|++++|.++++|+||++++|+++.+++|.+ .|+||+|++||+ +|+++++||+||++|+|+| T Consensus 1 g~N~V~L~G~l~~dpe~r~~~~G~~v~~f~lA~~~~~~~~~~~~~~~~~t~~~~v~~~g~-~Ae~~~~~l~KG~~V~V~G 79 (118) T d1ue1a_ 1 GDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIWRE-AAENVAESLTRGARVIVSG 79 (118) T ss_dssp CCCEEEEEEEESSCCEEEECTTSCEEEEEEEEECCCCCC-----CCCCCCEEEEEEEEHH-HHHHHHHHCCTTCEEEEEE T ss_pred CCCEEEEEEECCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECHH-HHHHHHHHCCCCCEEEEEE T ss_conf 957899999857598899979997899999973342001577731134315679986769-9999998636998999991 Q ss_pred CCCCCCCCCCCCCEEEEEEEEEEEEEEC Q ss_conf 1333332046883768899999776984 Q gi|254780183|r 83 SLQTRKWQDQSGNNRYTTEIIMRSMVML 110 (159) Q Consensus 83 rl~~~~~~~kdG~~r~~~~V~a~~i~~l 110 (159) +|+.++|++++|++|+.++|+|+.|... T Consensus 80 ~L~~~~~~~~dG~~r~~~~v~a~~vg~~ 107 (118) T d1ue1a_ 80 RLKQRSFETREGEKRTVIEVEVDEIGPS 107 (118) T ss_dssp EEEEEEECSSSSSCEEEEEEEEEEEEEC T ss_pred EEEECEEECCCCCEEEEEEEEEEEECCC T ss_conf 8660117999998999999999880455 No 6 >d1v1qa_ b.40.4.3 (A:) Primosomal replication protein N, PriB {Escherichia coli [TaxId: 562]} Probab=99.93 E-value=3.5e-26 Score=173.54 Aligned_cols=106 Identities=14% Similarity=0.223 Sum_probs=92.5 Q ss_pred CCCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEE Q ss_conf 98778379999642588667986999869999998345642026884530112430211015898772211047715999 Q gi|254780183|r 1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYI 80 (159) Q Consensus 1 mm~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V 80 (159) || +|+|+|+|+|++|||+|+|++|.++++|+||+++.++ ..+++++.+.|++|++||+ +|+.+++||+||++|+| T Consensus 4 mm--~N~v~L~G~l~~dpelr~T~~G~~v~~f~la~~~~~~--e~~~~r~~~~~i~vv~~g~-~Ae~~~~~l~kG~~v~v 78 (111) T d1v1qa_ 4 LM--TNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQE--EAGFHRQAWCQMPVIVSGH-ENQAITHSITVGSRITV 78 (111) T ss_dssp GC--CEEEEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEE--ETTEEEEEEEEEEEEEEST-GGGGGGTTCCTTCEEEE T ss_pred CC--EEEEEEEEEECCCCCEEECCCCCEEEEEEEEECCEEE--CCCCEEEEEEEEEEEEECH-HHHHHHHHHCCCCEEEE T ss_conf 53--6799999996688646788999789999998130773--1665078889997899689-99999987258999999 Q ss_pred EECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCC Q ss_conf 84133333204688376889999977698466777 Q gi|254780183|r 81 EGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRD 115 (159) Q Consensus 81 ~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~ 115 (159) +|+|..++|.+ |+.+ +.|.|++|+||+++.. T Consensus 79 ~G~L~~~~~~~--~~~r--~v~~a~~ie~l~s~~~ 109 (111) T d1v1qa_ 79 QGFISCHKAKN--GLSK--MVLHAEQIELIDSVDK 109 (111) T ss_dssp EEEEEEECTTT--TSCE--EEEEEEEEEETTSCSC T ss_pred EEEEEEECCCC--CCCE--EEEEEEEEEEECCCCC T ss_conf 99987702628--9977--9999999999517775 No 7 >d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=90.92 E-value=0.46 Score=23.94 Aligned_cols=45 Identities=13% Similarity=0.077 Sum_probs=33.6 Q ss_pred HHHCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCC Q ss_conf 2110477159998413333320468837688999997769846677 Q gi|254780183|r 69 EQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRR 114 (159) Q Consensus 69 ~~~l~KG~~V~V~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~ 114 (159) ..+|..|+.|.|+|.+....=.. .+-....+||.++.|.+|.... T Consensus 87 ~~~l~~es~V~V~G~v~~~~~~~-~~~~~~~~Ei~v~~i~vls~a~ 131 (134) T d1eova1 87 AGSLNLESIVLVRGIVKKVDEPI-KSATVQNLEIHITKIYTISETP 131 (134) T ss_dssp HTTCCTTCEEEEEEEEEECSSCC-TTSSEEEEEEEEEEEEEEECCC T ss_pred HHCCCCCCEEEEEEEEEECCCCC-CCCCCCCEEEEEEEEEEEECCC T ss_conf 96599878999999999588667-7899776999998999996778 No 8 >d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} Probab=90.53 E-value=0.3 Score=25.11 Aligned_cols=68 Identities=13% Similarity=0.197 Sum_probs=47.8 Q ss_pred CCCCEEEEEEEECCCCEEEECC--CCC-EEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEE Q ss_conf 7783799996425886679869--998-6999999834564202688453011243021101589877221104771599 Q gi|254780183|r 3 ASLNKVILIGNLGADPDVRHTQ--DGR-KIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVY 79 (159) Q Consensus 3 ~~mN~v~l~G~l~~dPelr~~~--~g~-~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~ 79 (159) -.|++++|.||+.+--++|.+. +|. .+..+.|+ |.. | . +.|++|++ +|+.....|+.|+-.. T Consensus 10 p~~~~~~I~~RV~~k~~~r~f~~~~~~g~v~~~~l~------De~-G------~-I~~t~~~~-~~~~f~~~l~~G~vy~ 74 (116) T d1jmca1 10 PYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELV------DES-G------E-IRATAFNE-QVDKFFPLIEVNKVYY 74 (116) T ss_dssp TTCCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEE------CSS-C------E-EEEEEEHH-HHHHHGGGCCTTCEEE T ss_pred CCCCCEEEEEEEEEECCCEEEECCCCCCEEEEEEEE------CCC-C------C-EEEEECHH-HHHHHHHHCCCCCEEE T ss_conf 899878999999871356588778997259999999------089-9------7-99998636-6322574015587999 Q ss_pred EEECCC Q ss_conf 984133 Q gi|254780183|r 80 IEGSLQ 85 (159) Q Consensus 80 V~Grl~ 85 (159) +.+--. T Consensus 75 i~~~~V 80 (116) T d1jmca1 75 FSKGTL 80 (116) T ss_dssp EECCEE T ss_pred ECCEEE T ss_conf 906099 No 9 >d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Probab=87.60 E-value=0.56 Score=23.45 Aligned_cols=77 Identities=17% Similarity=0.300 Sum_probs=49.1 Q ss_pred CCCCEEEEEEEECCCCEEEECC--CCC-EEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEE Q ss_conf 7783799996425886679869--998-6999999834564202688453011243021101589877221104771599 Q gi|254780183|r 3 ASLNKVILIGNLGADPDVRHTQ--DGR-KIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVY 79 (159) Q Consensus 3 ~~mN~v~l~G~l~~dPelr~~~--~g~-~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~ 79 (159) ..|..|.|.|++.+-.++|++. +|. .+.++.|+ |.|..+++++|++. ++ .|..|+-|. T Consensus 10 pg~~~v~i~~~V~~~~~~r~~~~~~g~~~v~~~~i~--------------DeTG~i~~~~W~~~-~~----~l~~Gdvv~ 70 (115) T d1o7ia_ 10 PNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVG--------------DETGRVKLTLWGKH-AG----SIKEGQVVK 70 (115) T ss_dssp TTCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEE--------------ETTEEEEEEEEGGG-TT----CCCTTCEEE T ss_pred CCCCCEEEEEEEEECCCCCEEECCCCCEEEEEEEEE--------------CCCCEEEEEEECCC-CC----CCCCCCEEE T ss_conf 999878999999988777256528998799999998--------------48986999981462-22----289999999 Q ss_pred EEECCCCCCCCCCCCCEEEEEEEEEEE Q ss_conf 984133333204688376889999977 Q gi|254780183|r 80 IEGSLQTRKWQDQSGNNRYTTEIIMRS 106 (159) Q Consensus 80 V~Grl~~~~~~~kdG~~r~~~~V~a~~ 106 (159) +.+-- .+.|. | .++|.+.. T Consensus 71 i~na~-v~~~~---g----~~el~~~~ 89 (115) T d1o7ia_ 71 IENAW-TTAFK---G----QVQLNAGS 89 (115) T ss_dssp EEEEE-EEEET---T----EEEEEECT T ss_pred EEEEE-EEEEC---C----EEEEEECC T ss_conf 96079-99879---9----18999899 No 10 >d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Probab=82.70 E-value=1.4 Score=21.07 Aligned_cols=81 Identities=25% Similarity=0.340 Sum_probs=48.0 Q ss_pred CEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHH----HHHHHHHHHCCCCCEEEEE Q ss_conf 379999642588667986999869999998345642026884530112430211015----8987722110477159998 Q gi|254780183|r 6 NKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSE----ELCRIVEQYLRKGSKVYIE 81 (159) Q Consensus 6 N~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~----~~Ae~~~~~l~KG~~V~V~ 81 (159) .+|+|.|++-+ +|.. ++..++.+| |.+..+.|++-.+ .+-+.+ ..|..|+.|.|+ T Consensus 17 ~~V~v~Gwv~~---~R~~-g~i~Fi~Lr----------------D~sg~iQ~v~~~~~~~~~~~~~~-~~l~~es~v~V~ 75 (103) T d1b8aa1 17 QKVKVAGWVWE---VKDL-GGIKFLWIR----------------DRDGIVQITAPKKKVDPELFKLI-PKLRSEDVVAVE 75 (103) T ss_dssp CEEEEEEEEEE---EEEE-TTEEEEEEE----------------ETTEEEEEEEETTTSCHHHHHHG-GGCCTTCEEEEE T ss_pred CEEEEEEEEEH---HCCC-CCCEEEEEE----------------CCCEEEEEEEECCCCCHHHHHHH-HHCCCCEEEEEE T ss_conf 99999999933---1417-996989999----------------38781069970301111246678-638864299999 Q ss_pred ECCCCCCCCCCCCCEEEEEEEEEEEEEECCCC Q ss_conf 41333332046883768899999776984667 Q gi|254780183|r 82 GSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGR 113 (159) Q Consensus 82 Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~ 113 (159) |.+..+.- .+.| .||.++.+.+|... T Consensus 76 G~v~~~~~-~~~~-----iEi~v~~i~ils~a 101 (103) T d1b8aa1 76 GVVNFTPK-AKLG-----FEILPEKIVVLNRA 101 (103) T ss_dssp EEEEECTT-STTS-----EEEEEEEEEEEECB T ss_pred EEEEECCC-CCCC-----EEEEEEEEEEEEEC T ss_conf 89997899-9825-----89996599999830 No 11 >d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit (RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]} Probab=74.36 E-value=2.5 Score=19.54 Aligned_cols=78 Identities=13% Similarity=0.244 Sum_probs=44.7 Q ss_pred CCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEE-ECCCCCHH-HHHHHHHHHCCCCCEEEEEE Q ss_conf 83799996425886679869998699999983456420268845301124-30211015-89877221104771599984 Q gi|254780183|r 5 LNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEW-HSVIVFSE-ELCRIVEQYLRKGSKVYIEG 82 (159) Q Consensus 5 mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~-~~v~~~g~-~~Ae~~~~~l~KG~~V~V~G 82 (159) +++|.|+|.+.+ +...+ ..+.|+| .|.|-. +.|..|-. .....-...+.-|+.|-|.| T Consensus 28 v~~V~iVG~V~~---i~~~~---t~~~y~i--------------dDgTG~~i~v~~w~~~~~~~~~~~~i~~g~yVrV~G 87 (128) T d2pi2a1 28 ISQVTIVGIIRH---AEKAP---TNIVYKI--------------DDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAG 87 (128) T ss_dssp ESEEEEEEEEEE---EEECS---SEEEEEE--------------ECSSSSCEEEEEECC-------CCCCCTTCEEEEEE T ss_pred EEEEEEEEEEEE---EEECC---CEEEEEE--------------ECCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE T ss_conf 999999999989---99658---7799999--------------889999489999788887722143056898999999 Q ss_pred CCCCCCCCCCCCCEEEEEEEEEEEEEECC Q ss_conf 13333320468837688999997769846 Q gi|254780183|r 83 SLQTRKWQDQSGNNRYTTEIIMRSMVMLD 111 (159) Q Consensus 83 rl~~~~~~~kdG~~r~~~~V~a~~i~~l~ 111 (159) +|+ .|. |++ .|.|..|..+. T Consensus 88 ~lk--~f~---~~~----~i~~~~i~~v~ 107 (128) T d2pi2a1 88 HLR--SFQ---NKK----SLVAFKIMPLE 107 (128) T ss_dssp EEE--EET---TEE----EEEEEEEEECS T ss_pred EEE--EEC---CEE----EEEEEEEEEEC T ss_conf 997--118---858----99999999937 No 12 >d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Probab=70.13 E-value=3.2 Score=18.95 Aligned_cols=83 Identities=17% Similarity=0.265 Sum_probs=47.4 Q ss_pred EEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCC Q ss_conf 79999642588667986999869999998345642026884530112430211015898772211047715999841333 Q gi|254780183|r 7 KVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSLQT 86 (159) Q Consensus 7 ~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl~~ 86 (159) +|+|.|++-+ +|. ..+..++.+| | .+.-+.|++-....+-.....|..++.|.|.|.++. T Consensus 18 ~V~l~GWV~~---~R~-~g~i~Fi~LR--------D--------~~G~iQ~v~~~~~~~~~~~~~l~~Es~I~V~G~V~~ 77 (104) T d1l0wa1 18 EVVLEGWVNR---RRD-LGGLIFLDLR--------D--------REGLVQLVAHPASPAYATAERVRPEWVVRAKGLVRL 77 (104) T ss_dssp EEEEEEEEEE---EEE-CSSCEEEEEE--------E--------TTEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEEE T ss_pred EEEEEEEEEE---HHC-CCCEEEEEEE--------C--------CCCCEEEECCCCHHHHHHHHHCCCCCEEEEEEEEEE T ss_conf 8999999975---211-8970999998--------7--------988568760631547889863386518999999940 Q ss_pred CCCCC---CCCCEEEEEEEEEEEEEECCCC Q ss_conf 33204---6883768899999776984667 Q gi|254780183|r 87 RKWQD---QSGNNRYTTEIIMRSMVMLDGR 113 (159) Q Consensus 87 ~~~~~---kdG~~r~~~~V~a~~i~~l~~~ 113 (159) +.=.+ +.| ..||.|+.+.+|... T Consensus 78 r~~~n~~~~tG----~iEi~v~~i~iL~~a 103 (104) T d1l0wa1 78 RPEPNPRLATG----RVEVELSALEVLAEA 103 (104) T ss_dssp CSSCCTTSTTT----TEEEEEEEEEEEECC T ss_pred CCCCCCCCCCC----CEEEEEEEEEEEECC T ss_conf 77568789998----799999699999757 No 13 >d1e1oa1 b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Probab=66.55 E-value=3.8 Score=18.51 Aligned_cols=83 Identities=16% Similarity=0.162 Sum_probs=48.2 Q ss_pred EEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCC Q ss_conf 79999642588667986999869999998345642026884530112430211015898772211047715999841333 Q gi|254780183|r 7 KVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSLQT 86 (159) Q Consensus 7 ~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl~~ 86 (159) .|+|.|||.. +|.. |+. +=+.| +|.. +.-| .+++-...+...-..+.+.+.-||-|-|+|.+.. T Consensus 56 ~V~vaGRI~~---~R~~--Gk~-~F~~i------~D~~-g~iQ---i~~~~~~~~~~~~~~~~k~ld~GDiIgv~G~~~~ 119 (143) T d1e1oa1 56 EVSVAGRMMT---RRIM--GKA-SFVTL------QDVG-GRIQ---LYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFK 119 (143) T ss_dssp EEEEEEEEEE---EEEE--TTE-EEEEE------EETT-EEEE---EEEETTTSSTTHHHHTGGGCCTTCEEEEEEEEEE T ss_pred EEEEEEEEEE---ECCC--CCE-EEEEE------EECC-CEEE---EEECCCCCHHHHHHHHHHCCCCCCEEEEECCCEE T ss_conf 6999999999---8036--880-68999------9679-6079---9982564114567888743772469995066278 Q ss_pred CCCCCCCCCEEEEEEEEEEEEEECCCC Q ss_conf 332046883768899999776984667 Q gi|254780183|r 87 RKWQDQSGNNRYTTEIIMRSMVMLDGR 113 (159) Q Consensus 87 ~~~~~kdG~~r~~~~V~a~~i~~l~~~ 113 (159) . +.|+ +.|.|+.+.+|... T Consensus 120 T----ktGE----lsi~~~~~~lLsK~ 138 (143) T d1e1oa1 120 T----QTGE----LSIHCTELRLLTKA 138 (143) T ss_dssp C----TTCC----EEEEEEEEEEEECC T ss_pred C----CCCC----EEEEEEEEEEECCC T ss_conf 9----9986----89995699982351 No 14 >d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga maritima [TaxId: 2336]} Probab=65.67 E-value=4 Score=18.40 Aligned_cols=65 Identities=18% Similarity=0.408 Sum_probs=36.3 Q ss_pred EEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCC--CCCEEEEEECC Q ss_conf 7999964258866798699986999999834564202688453011243021101589877221104--77159998413 Q gi|254780183|r 7 KVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLR--KGSKVYIEGSL 84 (159) Q Consensus 7 ~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~--KG~~V~V~Grl 84 (159) .+++.|.+.+- +.+.+. +....++.+. | .+.-+.|+.|+. .++..+++ .|..|+|.|++ T Consensus 62 ~vti~g~V~~~-~~~~~~-~~~~~~~~v~------D--------~~g~i~l~fFn~---~~~~~~~k~~~G~~v~v~Gkv 122 (180) T d1gm5a2 62 KVTTQGKIVSV-ETKKFQ-NMNILTAVLS------D--------GLVHVPLKWFNQ---DYLQTYLKQLTGKEVFVTGTV 122 (180) T ss_dssp CCEEEECCCCC-EEEECS-SCEEEEEEEC------C--------SSCCEEEEECSC---CTTHHHHHTTCSSCEEEEEEE T ss_pred EEEEEEEEEEE-CCCCCC-CCCEEEEEEE------E--------CCCEEEEEEECC---HHHHHHHHHHCCCEEEEEEEE T ss_conf 44442378763-233223-5212578998------5--------244077888673---899998754139569999877 Q ss_pred CCCCCC Q ss_conf 333320 Q gi|254780183|r 85 QTRKWQ 90 (159) Q Consensus 85 ~~~~~~ 90 (159) +...|. T Consensus 123 k~~~~~ 128 (180) T d1gm5a2 123 KSNAYT 128 (180) T ss_dssp CSCCTT T ss_pred EECCCC T ss_conf 202216 No 15 >d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Probab=61.79 E-value=4.7 Score=17.97 Aligned_cols=87 Identities=14% Similarity=0.246 Sum_probs=49.5 Q ss_pred CEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHH--HHHHHHHHCCCCCEEEEEEC Q ss_conf 3799996425886679869998699999983456420268845301124302110158--98772211047715999841 Q gi|254780183|r 6 NKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEE--LCRIVEQYLRKGSKVYIEGS 83 (159) Q Consensus 6 N~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~--~Ae~~~~~l~KG~~V~V~Gr 83 (159) .+|+|.|.+-+ +|. ..+..++.+| |.+..+.|++-.+. ..+.+ ..|..++.|.|.|. T Consensus 16 ~~V~v~GWv~~---~R~-~g~i~Fi~LR----------------D~~G~~Q~v~~~~~~~~~~~~-~~l~~Es~v~V~G~ 74 (106) T d1c0aa1 16 QQVTLCGWVNR---RRD-LGSLIFIDMR----------------DREGIVQVFFDPDRADALKLA-SELRNEFCIQVTGT 74 (106) T ss_dssp CEEEEEEEEEE---EEE-CSSCEEEEEE----------------ETTEEEEEEECGGGHHHHHHH-TTCCTTCEEEEEEE T ss_pred CEEEEEEEEEE---EEE-CCCCEEEEEE----------------CCCEEEEEEECCCCHHHHHHH-HHHCCCCEEEEEEE T ss_conf 98999999987---552-8983999998----------------597577589525404678999-76170006998727 Q ss_pred CCCCCCCCCC-CCEEEEEEEEEEEEEECCCC Q ss_conf 3333320468-83768899999776984667 Q gi|254780183|r 84 LQTRKWQDQS-GNNRYTTEIIMRSMVMLDGR 113 (159) Q Consensus 84 l~~~~~~~kd-G~~r~~~~V~a~~i~~l~~~ 113 (159) ++.+.=...+ ..+--..||.++.+..|... T Consensus 75 V~~r~~~~~n~~~~tg~iEi~v~~i~vl~~a 105 (106) T d1c0aa1 75 VRARDEKNINRDMATGEIEVLASSLTIINRA 105 (106) T ss_dssp EEECCTTTCCTTSTTTTEEEEEEEEEEEECC T ss_pred EECCCCCCCCCCCCCCCEEEEEEEEEEEECC T ss_conf 7516744458888998689998199999678 No 16 >d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54) N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Probab=38.71 E-value=11 Score=15.73 Aligned_cols=49 Identities=22% Similarity=0.314 Sum_probs=31.2 Q ss_pred EECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEEC Q ss_conf 430211015898772211047715999841333332046883768899999776984 Q gi|254780183|r 54 WHSVIVFSEELCRIVEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVML 110 (159) Q Consensus 54 ~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l 110 (159) .+.|.+.++ +. ..++-|++|.|.|-++... . .+..++..-|.|..|++| T Consensus 191 ~i~v~l~~d-lv----d~~~pGd~V~i~GI~~~~~-~--~~~~~~~~~i~a~~Ie~l 239 (239) T d1ltla_ 191 QITVVLEDD-LV----DTLTPGDIVRVTGTLRTVR-D--ERTKRFKNFIYGNYTEFL 239 (239) T ss_dssp EEEEEEEGG-GT----TCCCTTCEEEEEEEEEEEE-E--TTTTEEEEEEEEEECCBC T ss_pred EEEEEEECC-CC----CCCCCCCEEEEEEEEEEEE-C--CCCCCEEEEEEEEEEEEC T ss_conf 799999603-02----8658999999999998765-6--999832799999999979 No 17 >d1jb7a1 b.40.4.3 (A:36-204) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]} Probab=35.12 E-value=13 Score=15.39 Aligned_cols=83 Identities=8% Similarity=0.161 Sum_probs=49.6 Q ss_pred CEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCC-CCCEEEEEECC Q ss_conf 37999964258866798699986999999834564202688453011243021101589877221104-77159998413 Q gi|254780183|r 6 NKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLR-KGSKVYIEGSL 84 (159) Q Consensus 6 N~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~-KG~~V~V~Grl 84 (159) -.|-|+|=+..-...+.+....-+++|+| ++.++.-+......+..+.+.|.+|.+ .-+.+- .+. -||.|.+. |+ T Consensus 15 ~~vNv~GVV~~~~~p~~s~g~D~~~tl~I-~D~S~~~~~~~~~~~~~~~l~v~~F~~-~~~~LP-~V~~~GDII~l~-rv 90 (169) T d1jb7a1 15 QPQHFYAVVIDATFPYKTNQERYICSLKI-VDPTLYLKQQKGAGDASDYATLVLYAK-RFEDLP-IIHRAGDIIRVH-RA 90 (169) T ss_dssp SCEEEEEEEEEECCCEECSSSCEEEEEEE-EBTTBSBCCTTSSCSCBCCEEEEEEES-SGGGSC-CCCEETCEEEEE-EE T ss_pred CEEEEEEEEEECCCCEECCCCCEEEEEEE-EECCCCCCCCCCCCCCCCCEEEEEECC-CHHHCC-CCCCCCCEEEEE-EE T ss_conf 76899999966478615699838999999-808888665445555677569999789-977889-878989899998-88 Q ss_pred CCCCCCCC Q ss_conf 33332046 Q gi|254780183|r 85 QTRKWQDQ 92 (159) Q Consensus 85 ~~~~~~~k 92 (159) +...|.++ T Consensus 91 ~i~~~~g~ 98 (169) T d1jb7a1 91 TLRLYNGQ 98 (169) T ss_dssp EEEEETTE T ss_pred EEEEECCC T ss_conf 99998792 No 18 >d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Probab=27.42 E-value=17 Score=14.61 Aligned_cols=73 Identities=19% Similarity=0.227 Sum_probs=45.8 Q ss_pred EEEEEEEECCCCEEEECCCCC-EEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCC Q ss_conf 799996425886679869998-6999999834564202688453011243021101589877221104771599984133 Q gi|254780183|r 7 KVILIGNLGADPDVRHTQDGR-KIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSLQ 85 (159) Q Consensus 7 ~v~l~G~l~~dPelr~~~~g~-~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl~ 85 (159) +|+|.|++-+ +|. .|+ .++.++ |.+..+.|++-. . ..+..++-|.|+|.+. T Consensus 15 ~V~v~GwV~~---~R~--~gk~~Fi~Lr----------------D~sg~iQ~v~~~---~----~~~~~e~~v~v~G~v~ 66 (93) T d1n9wa1 15 EVELLGFLHW---RRD--LGRIQFLLLR----------------DRSGVVQVVTGG---L----KLPLPESALRVRGLVV 66 (93) T ss_dssp EEEEEEEEEE---EEE--CSSEEEEEEE----------------ETTEEEEEEEES---C----CCCCTTCEEEEEEEEE T ss_pred EEEEEEEEEE---EEE--CCCCEEEEEE----------------CCCCCCEEEECC---C----CCCCCCEEEEEEEEEE T ss_conf 9999899993---782--7980999998----------------398524378424---4----3355431999999999 Q ss_pred CCCCCCCCCCEEEEEEEEEEEEEECCCC Q ss_conf 3332046883768899999776984667 Q gi|254780183|r 86 TRKWQDQSGNNRYTTEIIMRSMVMLDGR 113 (159) Q Consensus 86 ~~~~~~kdG~~r~~~~V~a~~i~~l~~~ 113 (159) .+.- ..| ..||.++.+.+|... T Consensus 67 ~~~~--~~~----~~Ei~v~~i~il~~a 88 (93) T d1n9wa1 67 ENAK--APG----GLEVQAKEVEVLSPA 88 (93) T ss_dssp ECTT--STT----SEEEEEEEEEEEECC T ss_pred ECCC--CCC----CEEEEEEEEEEEECC T ss_conf 8999--998----899998099998557 No 19 >d1vqoj1 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon Haloarcula marismortui [TaxId: 2238]} Probab=24.25 E-value=18 Score=14.55 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=17.8 Q ss_pred CCHHHHHHHHHHHCCCCCEEEEE Q ss_conf 10158987722110477159998 Q gi|254780183|r 59 VFSEELCRIVEQYLRKGSKVYIE 81 (159) Q Consensus 59 ~~g~~~Ae~~~~~l~KG~~V~V~ 81 (159) ..| ++|..+++.|-.|+.|+|. T Consensus 15 ~lG-RLAs~vAk~l~~Gd~ViVv 36 (142) T d1vqoj1 15 IMG-RVASQVAEQALDGETVAVV 36 (142) T ss_dssp BHH-HHHHHHHHHHHTTCCEEEE T ss_pred CHH-HHHHHHHHHHCCCCEEEEE T ss_conf 558-8899999986389879999 No 20 >d1jmca2 b.40.4.3 (A:299-420) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} Probab=22.52 E-value=21 Score=14.05 Aligned_cols=68 Identities=13% Similarity=0.222 Sum_probs=39.0 Q ss_pred EEEEEEEECC--CCE-EEECCCCCEEEEEEEEECCCCCCCCCCCEEECEE-EECCCCCHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 7999964258--866-7986999869999998345642026884530112-43021101589877221104771599984 Q gi|254780183|r 7 KVILIGNLGA--DPD-VRHTQDGRKIVNIRIATSDSWKDRVTNERREKTE-WHSVIVFSEELCRIVEQYLRKGSKVYIEG 82 (159) Q Consensus 7 ~v~l~G~l~~--dPe-lr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~-~~~v~~~g~~~Ae~~~~~l~KG~~V~V~G 82 (159) .|=++|-|.. +++ +.....|....+-.|-. .|.+. =+.|++||+. |+.+. ..++.-|++.| T Consensus 18 ~vDViGvv~~v~~~~~i~~k~~g~~~~kR~i~i------------~D~t~~~i~vtLWg~~-a~~~~--~~~~~Vi~~k~ 82 (122) T d1jmca2 18 LVDIIGICKSYEDATKITVRSNNREVAKRNIYL------------MDTSGKVVTATLWGED-ADKFD--GSRQPVLAIKG 82 (122) T ss_dssp EEEEEEEEEEECCCEEEEETTTTEEEEEEEEEE------------ECTTCCEEEEEEEHHH-HHHCC--CTTCCEEEEEE T ss_pred EEEEEEEEEECCCCEEEEECCCCCCEEEEEEEE------------ECCCCCEEEEEEECHH-HHHHC--CCCCCEEEEEE T ss_conf 489999999933857999967998145899999------------9199998999998257-56507--78998999960 Q ss_pred CCCCCCCC Q ss_conf 13333320 Q gi|254780183|r 83 SLQTRKWQ 90 (159) Q Consensus 83 rl~~~~~~ 90 (159) ++...|. T Consensus 83 -~~v~~~~ 89 (122) T d1jmca2 83 -ARVSDFG 89 (122) T ss_dssp -EEEECTT T ss_pred -EEEEECC T ss_conf -3973234 No 21 >d1j3aa_ c.21.1.1 (A:) Ribosomal protein L13 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Probab=20.98 E-value=23 Score=13.86 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=18.0 Q ss_pred CCHHHHHHHHHHHCCCCCEEEEE Q ss_conf 10158987722110477159998 Q gi|254780183|r 59 VFSEELCRIVEQYLRKGSKVYIE 81 (159) Q Consensus 59 ~~g~~~Ae~~~~~l~KG~~V~V~ 81 (159) ..| ++|..++..|..|+.|+|. T Consensus 10 ~lG-RLAs~vAk~L~~Gd~ViVv 31 (142) T d1j3aa_ 10 ILG-RLASRVAKMLLEGEEVVIV 31 (142) T ss_dssp BHH-HHHHHHHHHHHTTCCEEEE T ss_pred CHH-HHHHHHHHHHHCCCEEEEE T ss_conf 227-8999999999579949999 Done!