Query         gi|254780183|ref|YP_003064596.1| single-strand binding protein (ssb) [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 159
No_of_seqs    107 out of 2718
Neff          8.4 
Searched_HMMs 13730
Date          Mon May 23 10:45:24 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780183.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1qvca_ b.40.4.3 (A:) ssDNA-bi 100.0 7.9E-35 5.8E-39  225.0  14.8  114    2-116     2-118 (145)
  2 d3ulla_ b.40.4.3 (A:) ssDNA-bi 100.0 2.1E-34 1.5E-38  222.5  10.6  110    1-110     1-115 (115)
  3 d1se8a_ b.40.4.3 (A:) ssDNA-bi 100.0 3.2E-33 2.3E-37  215.5  11.9  120    3-124     1-121 (231)
  4 d1se8a_ b.40.4.3 (A:) ssDNA-bi 100.0 9.3E-32 6.8E-36  206.7  11.9  109    1-112   123-231 (231)
  5 d1ue1a_ b.40.4.3 (A:) ssDNA-bi 100.0 1.9E-30 1.4E-34  199.0  13.0  106    4-110     1-107 (118)
  6 d1v1qa_ b.40.4.3 (A:) Primosom  99.9 3.5E-26 2.5E-30  173.5  10.9  106    1-115     4-109 (111)
  7 d1eova1 b.40.4.1 (A:71-204) As  90.9    0.46 3.4E-05   23.9   8.4   45   69-114    87-131 (134)
  8 d1jmca1 b.40.4.3 (A:183-298) R  90.5     0.3 2.2E-05   25.1   5.7   68    3-85     10-80  (116)
  9 d1o7ia_ b.40.4.3 (A:) Archaeal  87.6    0.56 4.1E-05   23.5   5.4   77    3-106    10-89  (115)
 10 d1b8aa1 b.40.4.1 (A:1-103) Asp  82.7     1.4  0.0001   21.1   8.3   81    6-113    17-101 (103)
 11 d2pi2a1 b.40.4.3 (A:44-171) Re  74.4     2.5 0.00019   19.5   5.1   78    5-111    28-107 (128)
 12 d1l0wa1 b.40.4.1 (A:1-104) Asp  70.1     3.2 0.00023   18.9   7.3   83    7-113    18-103 (104)
 13 d1e1oa1 b.40.4.1 (A:11-153) Ly  66.6     3.8 0.00028   18.5   9.6   83    7-113    56-138 (143)
 14 d1gm5a2 b.40.4.9 (A:106-285) R  65.7       4 0.00029   18.4   4.3   65    7-90     62-128 (180)
 15 d1c0aa1 b.40.4.1 (A:1-106) Asp  61.8     4.7 0.00034   18.0   8.7   87    6-113    16-105 (106)
 16 d1ltla_ b.40.4.11 (A:) DNA rep  38.7      11 0.00081   15.7   3.5   49   54-110   191-239 (239)
 17 d1jb7a1 b.40.4.3 (A:36-204) Te  35.1      13 0.00092   15.4   4.9   83    6-92     15-98  (169)
 18 d1n9wa1 b.40.4.1 (A:1-93) Aspa  27.4      17  0.0012   14.6   8.9   73    7-113    15-88  (93)
 19 d1vqoj1 c.21.1.1 (J:4-145) Rib  24.3      18  0.0013   14.5   1.9   22   59-81     15-36  (142)
 20 d1jmca2 b.40.4.3 (A:299-420) R  22.5      21  0.0015   14.1   6.9   68    7-90     18-89  (122)
 21 d1j3aa_ c.21.1.1 (A:) Ribosoma  21.0      23  0.0017   13.9   2.0   22   59-81     10-31  (142)

No 1  
>d1qvca_ b.40.4.3 (A:) ssDNA-binding protein {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=7.9e-35  Score=225.02  Aligned_cols=114  Identities=54%  Similarity=1.011  Sum_probs=105.1

Q ss_pred             CCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             87783799996425886679869998699999983456420268845301124302110158987722110477159998
Q gi|254780183|r    2 VASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIE   81 (159)
Q Consensus         2 m~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~   81 (159)
                      ..+||+|+|+|||++|||+|++++|.++++|+||++++|+++.+++|++.|+||+|++|++ +|+++.+||+||++|+|+
T Consensus         2 ~~~mN~v~LiG~l~~dpe~r~~~~G~~v~~f~va~~~~~~~~~~~~~~~~t~w~~v~~~g~-~Ae~~~~~l~KG~~V~V~   80 (145)
T d1qvca_           2 SRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGK-LAEVASEYLRKGSQVYIE   80 (145)
T ss_dssp             CCCEEEEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETH-HHHHHHHHCCTTCEEEEE
T ss_pred             CCCCEEEEEEEECCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECC-HHHHHHHHCCCCCEEEEE
T ss_conf             8760299999988879889888999989999987244534456544323404772587320-145676540357789999


Q ss_pred             ECCCCCCCCCCCCCEEEEEEEEEE---EEEECCCCCCC
Q ss_conf             413333320468837688999997---76984667776
Q gi|254780183|r   82 GSLQTRKWQDQSGNNRYTTEIIMR---SMVMLDGRRDS  116 (159)
Q Consensus        82 Grl~~~~~~~kdG~~r~~~~V~a~---~i~~l~~~~~~  116 (159)
                      |+|++++|+++||++|+.++|+|+   .+.+|.++...
T Consensus        81 G~l~~~~~~~kdG~~r~~~ei~~~~~~~l~~l~~r~~~  118 (145)
T d1qvca_          81 GQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGG  118 (145)
T ss_dssp             EEEEEEEECSSSSCEEEEEEEECTTCEEEECCCCSCCC
T ss_pred             EEEEEEEEECCCCCEEEEEEEEEECCCCEEECCCCCCC
T ss_conf             98877345879999899999999237857898676677


No 2  
>d3ulla_ b.40.4.3 (A:) ssDNA-binding protein {Human (Homo sapiens), mitochondria [TaxId: 9606]}
Probab=100.00  E-value=2.1e-34  Score=222.48  Aligned_cols=110  Identities=31%  Similarity=0.635  Sum_probs=104.2

Q ss_pred             CCCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCC-----CCEEECEEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf             987783799996425886679869998699999983456420268-----845301124302110158987722110477
Q gi|254780183|r    1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVT-----NERREKTEWHSVIVFSEELCRIVEQYLRKG   75 (159)
Q Consensus         1 mm~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~-----~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG   75 (159)
                      |+.+||+|+|+|||++|||+|++++|.++++|+||++++|++..+     ++|.+.|+||+|++||+.+|+++.+||+||
T Consensus         1 ~~~~mN~V~L~G~l~~dpe~r~t~~G~~v~~f~vAv~~~~~~~~~~~~~~g~~~~~t~w~~v~~~g~~~a~~~~~~l~KG   80 (115)
T d3ulla_           1 LERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKG   80 (115)
T ss_dssp             CCCCEEEEEEEEEECSCCEEECCTTSCCEEEEEEEEEEEECC---------CCEEEEEEEEEEECSTTHHHHHHHHCCTT
T ss_pred             CCCCEEEEEEEEECCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCHHHHHHCCCC
T ss_conf             98732699999988889899991899889999997066411666651213320352003511234111102245315578


Q ss_pred             CEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEEC
Q ss_conf             15999841333332046883768899999776984
Q gi|254780183|r   76 SKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVML  110 (159)
Q Consensus        76 ~~V~V~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l  110 (159)
                      ++|+|+|+|++++|+++||++|+.++|+|++|.||
T Consensus        81 ~~V~V~Grl~~~~~~dkdG~~r~~~~v~a~~i~~L  115 (115)
T d3ulla_          81 SRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFL  115 (115)
T ss_dssp             CEEEEEEEEECCCEESSSSEECCCEEEEEEEEECC
T ss_pred             CEEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEC
T ss_conf             79999987710358989998999999999999959


No 3  
>d1se8a_ b.40.4.3 (A:) ssDNA-binding protein {Deinococcus radiodurans [TaxId: 1299]}
Probab=100.00  E-value=3.2e-33  Score=215.46  Aligned_cols=120  Identities=24%  Similarity=0.409  Sum_probs=103.2

Q ss_pred             CCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHH-HHCCCCCEEEEE
Q ss_conf             7783799996425886679869998699999983456420268845301124302110158987722-110477159998
Q gi|254780183|r    3 ASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVE-QYLRKGSKVYIE   81 (159)
Q Consensus         3 ~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~-~~l~KG~~V~V~   81 (159)
                      .+||+|+|+|||++|||+|++++|.++++|+||++++|+++. +++++.|+||+|++||+ +|++++ .||+||++|+|+
T Consensus         1 r~mN~v~l~G~l~~dpe~r~t~~G~~~~~f~lA~~~~~~~~~-g~~~~~t~~~~v~~~g~-~Ae~~~~~~l~KG~~V~V~   78 (231)
T d1se8a_           1 RGMNHVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIGND-GRERNLPWYHRVSILGK-PAEWQAERNLKGGDAVVVE   78 (231)
T ss_dssp             CCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEC--------CEEEEEEEEEEESH-HHHHHHHTCCCTTCEEEEE
T ss_pred             CCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCEECCC-CCEEEEEEEEEEEEECC-HHHHHHHHCCCCCCEEEEE
T ss_conf             984499999997769889987999889999999789678799-87986200566888670-4655023116899999999


Q ss_pred             ECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf             4133333204688376889999977698466777666677777
Q gi|254780183|r   82 GSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSLQGEEQRS  124 (159)
Q Consensus        82 Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~~~~~~~~~~  124 (159)
                      |+|+.++|+++||++|+.++|+|++|.||+++..........+
T Consensus        79 G~l~~~~~~~~dG~~r~~~~i~a~~v~~l~~~~~~~~~~~~~~  121 (231)
T d1se8a_          79 GTLEYRQWEAPEGGKRSAVNVKALRMEQLGTQPELIQDAGGGV  121 (231)
T ss_dssp             EEEEEEEEC-----CEEEEEEEEEEEEECSSCCCEEECTTSCE
T ss_pred             EEEEEEEEECCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCC
T ss_conf             9978503699999899999999999999358721133544554


No 4  
>d1se8a_ b.40.4.3 (A:) ssDNA-binding protein {Deinococcus radiodurans [TaxId: 1299]}
Probab=99.97  E-value=9.3e-32  Score=206.73  Aligned_cols=109  Identities=30%  Similarity=0.600  Sum_probs=102.3

Q ss_pred             CCCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf             98778379999642588667986999869999998345642026884530112430211015898772211047715999
Q gi|254780183|r    1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYI   80 (159)
Q Consensus         1 mm~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V   80 (159)
                      |+.+||+|+|+|||++|||+|++++|.++|+|+||++++|+++. ++|+++|+||+|++||+ +|++++ +|+||++|+|
T Consensus       123 m~~~~N~v~l~G~l~~dpe~r~t~~G~~~~~f~va~~~~~~~~~-g~~~~~t~~~~v~~~g~-~Ae~~~-~l~KG~~V~V  199 (231)
T d1se8a_         123 MSGAMNEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQ-GQRQEKVHYIDATLWRD-LAENMK-ELRKGDPVMI  199 (231)
T ss_dssp             EETCEEEEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTT-SCEEEEEEEEEEEEETH-HHHHHT-TCCTTCEEEE
T ss_pred             CCCCCEEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCEECCC-CCEEEEEEEEEEEECCC-HHHHHH-HCCCCCEEEE
T ss_conf             11243018999993898499997899889999999779749898-96615337877675370-777765-3799799999


Q ss_pred             EECCCCCCCCCCCCCEEEEEEEEEEEEEECCC
Q ss_conf             84133333204688376889999977698466
Q gi|254780183|r   81 EGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDG  112 (159)
Q Consensus        81 ~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~  112 (159)
                      +|+|++++|+++||++|+.++|+|++|.||+.
T Consensus       200 ~G~l~~~~~~~kdG~~r~~~~i~a~~v~~L~r  231 (231)
T d1se8a_         200 MGRLVNEGWTDKDGNKRNSTRVEATRVEALAR  231 (231)
T ss_dssp             EEEEEEEECC------CEEEEEEEEEEEECCC
T ss_pred             EEEEEECEEECCCCCEEEEEEEEEEEEEECCC
T ss_conf             99968250799999799999999999998059


No 5  
>d1ue1a_ b.40.4.3 (A:) ssDNA-binding protein {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=99.97  E-value=1.9e-30  Score=198.97  Aligned_cols=106  Identities=25%  Similarity=0.460  Sum_probs=99.9

Q ss_pred             CCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEE-CEEEECCCCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf             78379999642588667986999869999998345642026884530-11243021101589877221104771599984
Q gi|254780183|r    4 SLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERRE-KTEWHSVIVFSEELCRIVEQYLRKGSKVYIEG   82 (159)
Q Consensus         4 ~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d-~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~G   82 (159)
                      ..|+|+|+|||++|||+|++++|.++++|+||++++|+++.+++|.+ .|+||+|++||+ +|+++++||+||++|+|+|
T Consensus         1 g~N~V~L~G~l~~dpe~r~~~~G~~v~~f~lA~~~~~~~~~~~~~~~~~t~~~~v~~~g~-~Ae~~~~~l~KG~~V~V~G   79 (118)
T d1ue1a_           1 GDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIWRE-AAENVAESLTRGARVIVSG   79 (118)
T ss_dssp             CCCEEEEEEEESSCCEEEECTTSCEEEEEEEEECCCCCC-----CCCCCCEEEEEEEEHH-HHHHHHHHCCTTCEEEEEE
T ss_pred             CCCEEEEEEECCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECHH-HHHHHHHHCCCCCEEEEEE
T ss_conf             957899999857598899979997899999973342001577731134315679986769-9999998636998999991


Q ss_pred             CCCCCCCCCCCCCEEEEEEEEEEEEEEC
Q ss_conf             1333332046883768899999776984
Q gi|254780183|r   83 SLQTRKWQDQSGNNRYTTEIIMRSMVML  110 (159)
Q Consensus        83 rl~~~~~~~kdG~~r~~~~V~a~~i~~l  110 (159)
                      +|+.++|++++|++|+.++|+|+.|...
T Consensus        80 ~L~~~~~~~~dG~~r~~~~v~a~~vg~~  107 (118)
T d1ue1a_          80 RLKQRSFETREGEKRTVIEVEVDEIGPS  107 (118)
T ss_dssp             EEEEEEECSSSSSCEEEEEEEEEEEEEC
T ss_pred             EEEECEEECCCCCEEEEEEEEEEEECCC
T ss_conf             8660117999998999999999880455


No 6  
>d1v1qa_ b.40.4.3 (A:) Primosomal replication protein N, PriB {Escherichia coli [TaxId: 562]}
Probab=99.93  E-value=3.5e-26  Score=173.54  Aligned_cols=106  Identities=14%  Similarity=0.223  Sum_probs=92.5

Q ss_pred             CCCCCCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf             98778379999642588667986999869999998345642026884530112430211015898772211047715999
Q gi|254780183|r    1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYI   80 (159)
Q Consensus         1 mm~~mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V   80 (159)
                      ||  +|+|+|+|+|++|||+|+|++|.++++|+||+++.++  ..+++++.+.|++|++||+ +|+.+++||+||++|+|
T Consensus         4 mm--~N~v~L~G~l~~dpelr~T~~G~~v~~f~la~~~~~~--e~~~~r~~~~~i~vv~~g~-~Ae~~~~~l~kG~~v~v   78 (111)
T d1v1qa_           4 LM--TNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQE--EAGFHRQAWCQMPVIVSGH-ENQAITHSITVGSRITV   78 (111)
T ss_dssp             GC--CEEEEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEE--ETTEEEEEEEEEEEEEEST-GGGGGGTTCCTTCEEEE
T ss_pred             CC--EEEEEEEEEECCCCCEEECCCCCEEEEEEEEECCEEE--CCCCEEEEEEEEEEEEECH-HHHHHHHHHCCCCEEEE
T ss_conf             53--6799999996688646788999789999998130773--1665078889997899689-99999987258999999


Q ss_pred             EECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCC
Q ss_conf             84133333204688376889999977698466777
Q gi|254780183|r   81 EGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRD  115 (159)
Q Consensus        81 ~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~~  115 (159)
                      +|+|..++|.+  |+.+  +.|.|++|+||+++..
T Consensus        79 ~G~L~~~~~~~--~~~r--~v~~a~~ie~l~s~~~  109 (111)
T d1v1qa_          79 QGFISCHKAKN--GLSK--MVLHAEQIELIDSVDK  109 (111)
T ss_dssp             EEEEEEECTTT--TSCE--EEEEEEEEEETTSCSC
T ss_pred             EEEEEEECCCC--CCCE--EEEEEEEEEEECCCCC
T ss_conf             99987702628--9977--9999999999517775


No 7  
>d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=90.92  E-value=0.46  Score=23.94  Aligned_cols=45  Identities=13%  Similarity=0.077  Sum_probs=33.6

Q ss_pred             HHHCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCC
Q ss_conf             2110477159998413333320468837688999997769846677
Q gi|254780183|r   69 EQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRR  114 (159)
Q Consensus        69 ~~~l~KG~~V~V~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~~  114 (159)
                      ..+|..|+.|.|+|.+....=.. .+-....+||.++.|.+|....
T Consensus        87 ~~~l~~es~V~V~G~v~~~~~~~-~~~~~~~~Ei~v~~i~vls~a~  131 (134)
T d1eova1          87 AGSLNLESIVLVRGIVKKVDEPI-KSATVQNLEIHITKIYTISETP  131 (134)
T ss_dssp             HTTCCTTCEEEEEEEEEECSSCC-TTSSEEEEEEEEEEEEEEECCC
T ss_pred             HHCCCCCCEEEEEEEEEECCCCC-CCCCCCCEEEEEEEEEEEECCC
T ss_conf             96599878999999999588667-7899776999998999996778


No 8  
>d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}
Probab=90.53  E-value=0.3  Score=25.11  Aligned_cols=68  Identities=13%  Similarity=0.197  Sum_probs=47.8

Q ss_pred             CCCCEEEEEEEECCCCEEEECC--CCC-EEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf             7783799996425886679869--998-6999999834564202688453011243021101589877221104771599
Q gi|254780183|r    3 ASLNKVILIGNLGADPDVRHTQ--DGR-KIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVY   79 (159)
Q Consensus         3 ~~mN~v~l~G~l~~dPelr~~~--~g~-~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~   79 (159)
                      -.|++++|.||+.+--++|.+.  +|. .+..+.|+      |.. |      . +.|++|++ +|+.....|+.|+-..
T Consensus        10 p~~~~~~I~~RV~~k~~~r~f~~~~~~g~v~~~~l~------De~-G------~-I~~t~~~~-~~~~f~~~l~~G~vy~   74 (116)
T d1jmca1          10 PYQSKWTICARVTNKSQIRTWSNSRGEGKLFSLELV------DES-G------E-IRATAFNE-QVDKFFPLIEVNKVYY   74 (116)
T ss_dssp             TTCCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEE------CSS-C------E-EEEEEEHH-HHHHHGGGCCTTCEEE
T ss_pred             CCCCCEEEEEEEEEECCCEEEECCCCCCEEEEEEEE------CCC-C------C-EEEEECHH-HHHHHHHHCCCCCEEE
T ss_conf             899878999999871356588778997259999999------089-9------7-99998636-6322574015587999


Q ss_pred             EEECCC
Q ss_conf             984133
Q gi|254780183|r   80 IEGSLQ   85 (159)
Q Consensus        80 V~Grl~   85 (159)
                      +.+--.
T Consensus        75 i~~~~V   80 (116)
T d1jmca1          75 FSKGTL   80 (116)
T ss_dssp             EECCEE
T ss_pred             ECCEEE
T ss_conf             906099


No 9  
>d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=87.60  E-value=0.56  Score=23.45  Aligned_cols=77  Identities=17%  Similarity=0.300  Sum_probs=49.1

Q ss_pred             CCCCEEEEEEEECCCCEEEECC--CCC-EEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf             7783799996425886679869--998-6999999834564202688453011243021101589877221104771599
Q gi|254780183|r    3 ASLNKVILIGNLGADPDVRHTQ--DGR-KIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVY   79 (159)
Q Consensus         3 ~~mN~v~l~G~l~~dPelr~~~--~g~-~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~   79 (159)
                      ..|..|.|.|++.+-.++|++.  +|. .+.++.|+              |.|..+++++|++. ++    .|..|+-|.
T Consensus        10 pg~~~v~i~~~V~~~~~~r~~~~~~g~~~v~~~~i~--------------DeTG~i~~~~W~~~-~~----~l~~Gdvv~   70 (115)
T d1o7ia_          10 PNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVG--------------DETGRVKLTLWGKH-AG----SIKEGQVVK   70 (115)
T ss_dssp             TTCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEE--------------ETTEEEEEEEEGGG-TT----CCCTTCEEE
T ss_pred             CCCCCEEEEEEEEECCCCCEEECCCCCEEEEEEEEE--------------CCCCEEEEEEECCC-CC----CCCCCCEEE
T ss_conf             999878999999988777256528998799999998--------------48986999981462-22----289999999


Q ss_pred             EEECCCCCCCCCCCCCEEEEEEEEEEE
Q ss_conf             984133333204688376889999977
Q gi|254780183|r   80 IEGSLQTRKWQDQSGNNRYTTEIIMRS  106 (159)
Q Consensus        80 V~Grl~~~~~~~kdG~~r~~~~V~a~~  106 (159)
                      +.+-- .+.|.   |    .++|.+..
T Consensus        71 i~na~-v~~~~---g----~~el~~~~   89 (115)
T d1o7ia_          71 IENAW-TTAFK---G----QVQLNAGS   89 (115)
T ss_dssp             EEEEE-EEEET---T----EEEEEECT
T ss_pred             EEEEE-EEEEC---C----EEEEEECC
T ss_conf             96079-99879---9----18999899


No 10 
>d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Probab=82.70  E-value=1.4  Score=21.07  Aligned_cols=81  Identities=25%  Similarity=0.340  Sum_probs=48.0

Q ss_pred             CEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHH----HHHHHHHHHCCCCCEEEEE
Q ss_conf             379999642588667986999869999998345642026884530112430211015----8987722110477159998
Q gi|254780183|r    6 NKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSE----ELCRIVEQYLRKGSKVYIE   81 (159)
Q Consensus         6 N~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~----~~Ae~~~~~l~KG~~V~V~   81 (159)
                      .+|+|.|++-+   +|.. ++..++.+|                |.+..+.|++-.+    .+-+.+ ..|..|+.|.|+
T Consensus        17 ~~V~v~Gwv~~---~R~~-g~i~Fi~Lr----------------D~sg~iQ~v~~~~~~~~~~~~~~-~~l~~es~v~V~   75 (103)
T d1b8aa1          17 QKVKVAGWVWE---VKDL-GGIKFLWIR----------------DRDGIVQITAPKKKVDPELFKLI-PKLRSEDVVAVE   75 (103)
T ss_dssp             CEEEEEEEEEE---EEEE-TTEEEEEEE----------------ETTEEEEEEEETTTSCHHHHHHG-GGCCTTCEEEEE
T ss_pred             CEEEEEEEEEH---HCCC-CCCEEEEEE----------------CCCEEEEEEEECCCCCHHHHHHH-HHCCCCEEEEEE
T ss_conf             99999999933---1417-996989999----------------38781069970301111246678-638864299999


Q ss_pred             ECCCCCCCCCCCCCEEEEEEEEEEEEEECCCC
Q ss_conf             41333332046883768899999776984667
Q gi|254780183|r   82 GSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGR  113 (159)
Q Consensus        82 Grl~~~~~~~kdG~~r~~~~V~a~~i~~l~~~  113 (159)
                      |.+..+.- .+.|     .||.++.+.+|...
T Consensus        76 G~v~~~~~-~~~~-----iEi~v~~i~ils~a  101 (103)
T d1b8aa1          76 GVVNFTPK-AKLG-----FEILPEKIVVLNRA  101 (103)
T ss_dssp             EEEEECTT-STTS-----EEEEEEEEEEEECB
T ss_pred             EEEEECCC-CCCC-----EEEEEEEEEEEEEC
T ss_conf             89997899-9825-----89996599999830


No 11 
>d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit (RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=74.36  E-value=2.5  Score=19.54  Aligned_cols=78  Identities=13%  Similarity=0.244  Sum_probs=44.7

Q ss_pred             CCEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEE-ECCCCCHH-HHHHHHHHHCCCCCEEEEEE
Q ss_conf             83799996425886679869998699999983456420268845301124-30211015-89877221104771599984
Q gi|254780183|r    5 LNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEW-HSVIVFSE-ELCRIVEQYLRKGSKVYIEG   82 (159)
Q Consensus         5 mN~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~-~~v~~~g~-~~Ae~~~~~l~KG~~V~V~G   82 (159)
                      +++|.|+|.+.+   +...+   ..+.|+|              .|.|-. +.|..|-. .....-...+.-|+.|-|.|
T Consensus        28 v~~V~iVG~V~~---i~~~~---t~~~y~i--------------dDgTG~~i~v~~w~~~~~~~~~~~~i~~g~yVrV~G   87 (128)
T d2pi2a1          28 ISQVTIVGIIRH---AEKAP---TNIVYKI--------------DDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAG   87 (128)
T ss_dssp             ESEEEEEEEEEE---EEECS---SEEEEEE--------------ECSSSSCEEEEEECC-------CCCCCTTCEEEEEE
T ss_pred             EEEEEEEEEEEE---EEECC---CEEEEEE--------------ECCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE
T ss_conf             999999999989---99658---7799999--------------889999489999788887722143056898999999


Q ss_pred             CCCCCCCCCCCCCEEEEEEEEEEEEEECC
Q ss_conf             13333320468837688999997769846
Q gi|254780183|r   83 SLQTRKWQDQSGNNRYTTEIIMRSMVMLD  111 (159)
Q Consensus        83 rl~~~~~~~kdG~~r~~~~V~a~~i~~l~  111 (159)
                      +|+  .|.   |++    .|.|..|..+.
T Consensus        88 ~lk--~f~---~~~----~i~~~~i~~v~  107 (128)
T d2pi2a1          88 HLR--SFQ---NKK----SLVAFKIMPLE  107 (128)
T ss_dssp             EEE--EET---TEE----EEEEEEEEECS
T ss_pred             EEE--EEC---CEE----EEEEEEEEEEC
T ss_conf             997--118---858----99999999937


No 12 
>d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Probab=70.13  E-value=3.2  Score=18.95  Aligned_cols=83  Identities=17%  Similarity=0.265  Sum_probs=47.4

Q ss_pred             EEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf             79999642588667986999869999998345642026884530112430211015898772211047715999841333
Q gi|254780183|r    7 KVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSLQT   86 (159)
Q Consensus         7 ~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl~~   86 (159)
                      +|+|.|++-+   +|. ..+..++.+|        |        .+.-+.|++-....+-.....|..++.|.|.|.++.
T Consensus        18 ~V~l~GWV~~---~R~-~g~i~Fi~LR--------D--------~~G~iQ~v~~~~~~~~~~~~~l~~Es~I~V~G~V~~   77 (104)
T d1l0wa1          18 EVVLEGWVNR---RRD-LGGLIFLDLR--------D--------REGLVQLVAHPASPAYATAERVRPEWVVRAKGLVRL   77 (104)
T ss_dssp             EEEEEEEEEE---EEE-CSSCEEEEEE--------E--------TTEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEEE
T ss_pred             EEEEEEEEEE---HHC-CCCEEEEEEE--------C--------CCCCEEEECCCCHHHHHHHHHCCCCCEEEEEEEEEE
T ss_conf             8999999975---211-8970999998--------7--------988568760631547889863386518999999940


Q ss_pred             CCCCC---CCCCEEEEEEEEEEEEEECCCC
Q ss_conf             33204---6883768899999776984667
Q gi|254780183|r   87 RKWQD---QSGNNRYTTEIIMRSMVMLDGR  113 (159)
Q Consensus        87 ~~~~~---kdG~~r~~~~V~a~~i~~l~~~  113 (159)
                      +.=.+   +.|    ..||.|+.+.+|...
T Consensus        78 r~~~n~~~~tG----~iEi~v~~i~iL~~a  103 (104)
T d1l0wa1          78 RPEPNPRLATG----RVEVELSALEVLAEA  103 (104)
T ss_dssp             CSSCCTTSTTT----TEEEEEEEEEEEECC
T ss_pred             CCCCCCCCCCC----CEEEEEEEEEEEECC
T ss_conf             77568789998----799999699999757


No 13 
>d1e1oa1 b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]}
Probab=66.55  E-value=3.8  Score=18.51  Aligned_cols=83  Identities=16%  Similarity=0.162  Sum_probs=48.2

Q ss_pred             EEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf             79999642588667986999869999998345642026884530112430211015898772211047715999841333
Q gi|254780183|r    7 KVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSLQT   86 (159)
Q Consensus         7 ~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl~~   86 (159)
                      .|+|.|||..   +|..  |+. +=+.|      +|.. +.-|   .+++-...+...-..+.+.+.-||-|-|+|.+..
T Consensus        56 ~V~vaGRI~~---~R~~--Gk~-~F~~i------~D~~-g~iQ---i~~~~~~~~~~~~~~~~k~ld~GDiIgv~G~~~~  119 (143)
T d1e1oa1          56 EVSVAGRMMT---RRIM--GKA-SFVTL------QDVG-GRIQ---LYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFK  119 (143)
T ss_dssp             EEEEEEEEEE---EEEE--TTE-EEEEE------EETT-EEEE---EEEETTTSSTTHHHHTGGGCCTTCEEEEEEEEEE
T ss_pred             EEEEEEEEEE---ECCC--CCE-EEEEE------EECC-CEEE---EEECCCCCHHHHHHHHHHCCCCCCEEEEECCCEE
T ss_conf             6999999999---8036--880-68999------9679-6079---9982564114567888743772469995066278


Q ss_pred             CCCCCCCCCEEEEEEEEEEEEEECCCC
Q ss_conf             332046883768899999776984667
Q gi|254780183|r   87 RKWQDQSGNNRYTTEIIMRSMVMLDGR  113 (159)
Q Consensus        87 ~~~~~kdG~~r~~~~V~a~~i~~l~~~  113 (159)
                      .    +.|+    +.|.|+.+.+|...
T Consensus       120 T----ktGE----lsi~~~~~~lLsK~  138 (143)
T d1e1oa1         120 T----QTGE----LSIHCTELRLLTKA  138 (143)
T ss_dssp             C----TTCC----EEEEEEEEEEEECC
T ss_pred             C----CCCC----EEEEEEEEEEECCC
T ss_conf             9----9986----89995699982351


No 14 
>d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga maritima [TaxId: 2336]}
Probab=65.67  E-value=4  Score=18.40  Aligned_cols=65  Identities=18%  Similarity=0.408  Sum_probs=36.3

Q ss_pred             EEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCC--CCCEEEEEECC
Q ss_conf             7999964258866798699986999999834564202688453011243021101589877221104--77159998413
Q gi|254780183|r    7 KVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLR--KGSKVYIEGSL   84 (159)
Q Consensus         7 ~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~--KG~~V~V~Grl   84 (159)
                      .+++.|.+.+- +.+.+. +....++.+.      |        .+.-+.|+.|+.   .++..+++  .|..|+|.|++
T Consensus        62 ~vti~g~V~~~-~~~~~~-~~~~~~~~v~------D--------~~g~i~l~fFn~---~~~~~~~k~~~G~~v~v~Gkv  122 (180)
T d1gm5a2          62 KVTTQGKIVSV-ETKKFQ-NMNILTAVLS------D--------GLVHVPLKWFNQ---DYLQTYLKQLTGKEVFVTGTV  122 (180)
T ss_dssp             CCEEEECCCCC-EEEECS-SCEEEEEEEC------C--------SSCCEEEEECSC---CTTHHHHHTTCSSCEEEEEEE
T ss_pred             EEEEEEEEEEE-CCCCCC-CCCEEEEEEE------E--------CCCEEEEEEECC---HHHHHHHHHHCCCEEEEEEEE
T ss_conf             44442378763-233223-5212578998------5--------244077888673---899998754139569999877


Q ss_pred             CCCCCC
Q ss_conf             333320
Q gi|254780183|r   85 QTRKWQ   90 (159)
Q Consensus        85 ~~~~~~   90 (159)
                      +...|.
T Consensus       123 k~~~~~  128 (180)
T d1gm5a2         123 KSNAYT  128 (180)
T ss_dssp             CSCCTT
T ss_pred             EECCCC
T ss_conf             202216


No 15 
>d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]}
Probab=61.79  E-value=4.7  Score=17.97  Aligned_cols=87  Identities=14%  Similarity=0.246  Sum_probs=49.5

Q ss_pred             CEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHH--HHHHHHHHCCCCCEEEEEEC
Q ss_conf             3799996425886679869998699999983456420268845301124302110158--98772211047715999841
Q gi|254780183|r    6 NKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEE--LCRIVEQYLRKGSKVYIEGS   83 (159)
Q Consensus         6 N~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~--~Ae~~~~~l~KG~~V~V~Gr   83 (159)
                      .+|+|.|.+-+   +|. ..+..++.+|                |.+..+.|++-.+.  ..+.+ ..|..++.|.|.|.
T Consensus        16 ~~V~v~GWv~~---~R~-~g~i~Fi~LR----------------D~~G~~Q~v~~~~~~~~~~~~-~~l~~Es~v~V~G~   74 (106)
T d1c0aa1          16 QQVTLCGWVNR---RRD-LGSLIFIDMR----------------DREGIVQVFFDPDRADALKLA-SELRNEFCIQVTGT   74 (106)
T ss_dssp             CEEEEEEEEEE---EEE-CSSCEEEEEE----------------ETTEEEEEEECGGGHHHHHHH-TTCCTTCEEEEEEE
T ss_pred             CEEEEEEEEEE---EEE-CCCCEEEEEE----------------CCCEEEEEEECCCCHHHHHHH-HHHCCCCEEEEEEE
T ss_conf             98999999987---552-8983999998----------------597577589525404678999-76170006998727


Q ss_pred             CCCCCCCCCC-CCEEEEEEEEEEEEEECCCC
Q ss_conf             3333320468-83768899999776984667
Q gi|254780183|r   84 LQTRKWQDQS-GNNRYTTEIIMRSMVMLDGR  113 (159)
Q Consensus        84 l~~~~~~~kd-G~~r~~~~V~a~~i~~l~~~  113 (159)
                      ++.+.=...+ ..+--..||.++.+..|...
T Consensus        75 V~~r~~~~~n~~~~tg~iEi~v~~i~vl~~a  105 (106)
T d1c0aa1          75 VRARDEKNINRDMATGEIEVLASSLTIINRA  105 (106)
T ss_dssp             EEECCTTTCCTTSTTTTEEEEEEEEEEEECC
T ss_pred             EECCCCCCCCCCCCCCCEEEEEEEEEEEECC
T ss_conf             7516744458888998689998199999678


No 16 
>d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54) N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=38.71  E-value=11  Score=15.73  Aligned_cols=49  Identities=22%  Similarity=0.314  Sum_probs=31.2

Q ss_pred             EECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEEEC
Q ss_conf             430211015898772211047715999841333332046883768899999776984
Q gi|254780183|r   54 WHSVIVFSEELCRIVEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVML  110 (159)
Q Consensus        54 ~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl~~~~~~~kdG~~r~~~~V~a~~i~~l  110 (159)
                      .+.|.+.++ +.    ..++-|++|.|.|-++... .  .+..++..-|.|..|++|
T Consensus       191 ~i~v~l~~d-lv----d~~~pGd~V~i~GI~~~~~-~--~~~~~~~~~i~a~~Ie~l  239 (239)
T d1ltla_         191 QITVVLEDD-LV----DTLTPGDIVRVTGTLRTVR-D--ERTKRFKNFIYGNYTEFL  239 (239)
T ss_dssp             EEEEEEEGG-GT----TCCCTTCEEEEEEEEEEEE-E--TTTTEEEEEEEEEECCBC
T ss_pred             EEEEEEECC-CC----CCCCCCCEEEEEEEEEEEE-C--CCCCCEEEEEEEEEEEEC
T ss_conf             799999603-02----8658999999999998765-6--999832799999999979


No 17 
>d1jb7a1 b.40.4.3 (A:36-204) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]}
Probab=35.12  E-value=13  Score=15.39  Aligned_cols=83  Identities=8%  Similarity=0.161  Sum_probs=49.6

Q ss_pred             CEEEEEEEECCCCEEEECCCCCEEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCC-CCCEEEEEECC
Q ss_conf             37999964258866798699986999999834564202688453011243021101589877221104-77159998413
Q gi|254780183|r    6 NKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLR-KGSKVYIEGSL   84 (159)
Q Consensus         6 N~v~l~G~l~~dPelr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~-KG~~V~V~Grl   84 (159)
                      -.|-|+|=+..-...+.+....-+++|+| ++.++.-+......+..+.+.|.+|.+ .-+.+- .+. -||.|.+. |+
T Consensus        15 ~~vNv~GVV~~~~~p~~s~g~D~~~tl~I-~D~S~~~~~~~~~~~~~~~l~v~~F~~-~~~~LP-~V~~~GDII~l~-rv   90 (169)
T d1jb7a1          15 QPQHFYAVVIDATFPYKTNQERYICSLKI-VDPTLYLKQQKGAGDASDYATLVLYAK-RFEDLP-IIHRAGDIIRVH-RA   90 (169)
T ss_dssp             SCEEEEEEEEEECCCEECSSSCEEEEEEE-EBTTBSBCCTTSSCSCBCCEEEEEEES-SGGGSC-CCCEETCEEEEE-EE
T ss_pred             CEEEEEEEEEECCCCEECCCCCEEEEEEE-EECCCCCCCCCCCCCCCCCEEEEEECC-CHHHCC-CCCCCCCEEEEE-EE
T ss_conf             76899999966478615699838999999-808888665445555677569999789-977889-878989899998-88


Q ss_pred             CCCCCCCC
Q ss_conf             33332046
Q gi|254780183|r   85 QTRKWQDQ   92 (159)
Q Consensus        85 ~~~~~~~k   92 (159)
                      +...|.++
T Consensus        91 ~i~~~~g~   98 (169)
T d1jb7a1          91 TLRLYNGQ   98 (169)
T ss_dssp             EEEEETTE
T ss_pred             EEEEECCC
T ss_conf             99998792


No 18 
>d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]}
Probab=27.42  E-value=17  Score=14.61  Aligned_cols=73  Identities=19%  Similarity=0.227  Sum_probs=45.8

Q ss_pred             EEEEEEEECCCCEEEECCCCC-EEEEEEEEECCCCCCCCCCCEEECEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf             799996425886679869998-6999999834564202688453011243021101589877221104771599984133
Q gi|254780183|r    7 KVILIGNLGADPDVRHTQDGR-KIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIEGSLQ   85 (159)
Q Consensus         7 ~v~l~G~l~~dPelr~~~~g~-~v~~f~va~~~~~~~~~~~~~~d~t~~~~v~~~g~~~Ae~~~~~l~KG~~V~V~Grl~   85 (159)
                      +|+|.|++-+   +|.  .|+ .++.++                |.+..+.|++-.   .    ..+..++-|.|+|.+.
T Consensus        15 ~V~v~GwV~~---~R~--~gk~~Fi~Lr----------------D~sg~iQ~v~~~---~----~~~~~e~~v~v~G~v~   66 (93)
T d1n9wa1          15 EVELLGFLHW---RRD--LGRIQFLLLR----------------DRSGVVQVVTGG---L----KLPLPESALRVRGLVV   66 (93)
T ss_dssp             EEEEEEEEEE---EEE--CSSEEEEEEE----------------ETTEEEEEEEES---C----CCCCTTCEEEEEEEEE
T ss_pred             EEEEEEEEEE---EEE--CCCCEEEEEE----------------CCCCCCEEEECC---C----CCCCCCEEEEEEEEEE
T ss_conf             9999899993---782--7980999998----------------398524378424---4----3355431999999999


Q ss_pred             CCCCCCCCCCEEEEEEEEEEEEEECCCC
Q ss_conf             3332046883768899999776984667
Q gi|254780183|r   86 TRKWQDQSGNNRYTTEIIMRSMVMLDGR  113 (159)
Q Consensus        86 ~~~~~~kdG~~r~~~~V~a~~i~~l~~~  113 (159)
                      .+.-  ..|    ..||.++.+.+|...
T Consensus        67 ~~~~--~~~----~~Ei~v~~i~il~~a   88 (93)
T d1n9wa1          67 ENAK--APG----GLEVQAKEVEVLSPA   88 (93)
T ss_dssp             ECTT--STT----SEEEEEEEEEEEECC
T ss_pred             ECCC--CCC----CEEEEEEEEEEEECC
T ss_conf             8999--998----899998099998557


No 19 
>d1vqoj1 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=24.25  E-value=18  Score=14.55  Aligned_cols=22  Identities=14%  Similarity=0.237  Sum_probs=17.8

Q ss_pred             CCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             10158987722110477159998
Q gi|254780183|r   59 VFSEELCRIVEQYLRKGSKVYIE   81 (159)
Q Consensus        59 ~~g~~~Ae~~~~~l~KG~~V~V~   81 (159)
                      ..| ++|..+++.|-.|+.|+|.
T Consensus        15 ~lG-RLAs~vAk~l~~Gd~ViVv   36 (142)
T d1vqoj1          15 IMG-RVASQVAEQALDGETVAVV   36 (142)
T ss_dssp             BHH-HHHHHHHHHHHTTCCEEEE
T ss_pred             CHH-HHHHHHHHHHCCCCEEEEE
T ss_conf             558-8899999986389879999


No 20 
>d1jmca2 b.40.4.3 (A:299-420) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.52  E-value=21  Score=14.05  Aligned_cols=68  Identities=13%  Similarity=0.222  Sum_probs=39.0

Q ss_pred             EEEEEEEECC--CCE-EEECCCCCEEEEEEEEECCCCCCCCCCCEEECEE-EECCCCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf             7999964258--866-7986999869999998345642026884530112-43021101589877221104771599984
Q gi|254780183|r    7 KVILIGNLGA--DPD-VRHTQDGRKIVNIRIATSDSWKDRVTNERREKTE-WHSVIVFSEELCRIVEQYLRKGSKVYIEG   82 (159)
Q Consensus         7 ~v~l~G~l~~--dPe-lr~~~~g~~v~~f~va~~~~~~~~~~~~~~d~t~-~~~v~~~g~~~Ae~~~~~l~KG~~V~V~G   82 (159)
                      .|=++|-|..  +++ +.....|....+-.|-.            .|.+. =+.|++||+. |+.+.  ..++.-|++.|
T Consensus        18 ~vDViGvv~~v~~~~~i~~k~~g~~~~kR~i~i------------~D~t~~~i~vtLWg~~-a~~~~--~~~~~Vi~~k~   82 (122)
T d1jmca2          18 LVDIIGICKSYEDATKITVRSNNREVAKRNIYL------------MDTSGKVVTATLWGED-ADKFD--GSRQPVLAIKG   82 (122)
T ss_dssp             EEEEEEEEEEECCCEEEEETTTTEEEEEEEEEE------------ECTTCCEEEEEEEHHH-HHHCC--CTTCCEEEEEE
T ss_pred             EEEEEEEEEECCCCEEEEECCCCCCEEEEEEEE------------ECCCCCEEEEEEECHH-HHHHC--CCCCCEEEEEE
T ss_conf             489999999933857999967998145899999------------9199998999998257-56507--78998999960


Q ss_pred             CCCCCCCC
Q ss_conf             13333320
Q gi|254780183|r   83 SLQTRKWQ   90 (159)
Q Consensus        83 rl~~~~~~   90 (159)
                       ++...|.
T Consensus        83 -~~v~~~~   89 (122)
T d1jmca2          83 -ARVSDFG   89 (122)
T ss_dssp             -EEEECTT
T ss_pred             -EEEEECC
T ss_conf             -3973234


No 21 
>d1j3aa_ c.21.1.1 (A:) Ribosomal protein L13 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=20.98  E-value=23  Score=13.86  Aligned_cols=22  Identities=27%  Similarity=0.424  Sum_probs=18.0

Q ss_pred             CCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             10158987722110477159998
Q gi|254780183|r   59 VFSEELCRIVEQYLRKGSKVYIE   81 (159)
Q Consensus        59 ~~g~~~Ae~~~~~l~KG~~V~V~   81 (159)
                      ..| ++|..++..|..|+.|+|.
T Consensus        10 ~lG-RLAs~vAk~L~~Gd~ViVv   31 (142)
T d1j3aa_          10 ILG-RLASRVAKMLLEGEEVVIV   31 (142)
T ss_dssp             BHH-HHHHHHHHHHHTTCCEEEE
T ss_pred             CHH-HHHHHHHHHHHCCCEEEEE
T ss_conf             227-8999999999579949999


Done!