RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780183|ref|YP_003064596.1| single-strand binding protein (ssb) [Candidatus Liberibacter asiaticus str. psy62] (159 letters) >d1se8a_ b.40.4.3 (A:) ssDNA-binding protein {Deinococcus radiodurans [TaxId: 1299]} Length = 231 Score = 131 bits (330), Expect = 3e-32 Identities = 34/140 (24%), Positives = 57/140 (40%), Gaps = 1/140 (0%) Query: 4 SLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEE 63 +N V LIG L DP++R+T +G + +A D R +H V + + Sbjct: 2 GMNHVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIGN-DGRERNLPWYHRVSILGKP 60 Query: 64 LCRIVEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSLQGEEQR 123 E+ L+ G V +EG+L+ R+W+ G R + M L + + +Q Sbjct: 61 AEWQAERNLKGGDAVVVEGTLEYRQWEAPEGGKRSAVNVKALRMEQLGTQPELIQDAGGG 120 Query: 124 SEQHSNNLKENVVGNRYSSP 143 + V+GN P Sbjct: 121 VRMSGAMNEVLVLGNVTRDP 140 Score = 105 bits (263), Expect = 2e-24 Identities = 32/111 (28%), Positives = 63/111 (56%), Gaps = 3/111 (2%) Query: 1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVF 60 M ++N+V+++GN+ DP++R+T G ++++ IA +++++DR +R+EK + ++ Sbjct: 123 MSGAMNEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDR-QGQRQEKVHYIDATLW 181 Query: 61 SEELCRIVEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLD 111 + + + LRKG V I G L W D+ GN R +T + + L Sbjct: 182 RDLAENM--KELRKGDPVMIMGRLVNEGWTDKDGNKRNSTRVEATRVEALA 230 >d1qvca_ b.40.4.3 (A:) ssDNA-binding protein {Escherichia coli [TaxId: 562]} Length = 145 Score = 112 bits (282), Expect = 1e-26 Identities = 61/126 (48%), Positives = 85/126 (67%), Gaps = 4/126 (3%) Query: 4 SLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEE 63 +NKVIL+GNLG DP+VR+ +G + NI +ATS+SW+D+ T E +E+TEWH +V + Sbjct: 4 GVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHR-VVLFGK 62 Query: 64 LCRIVEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMR---SMVMLDGRRDSLQGE 120 L + +YLRKGS+VYIEG L+TRKW DQSG +RYTTE+++ +M ML GR+ Sbjct: 63 LAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPA 122 Query: 121 EQRSEQ 126 Sbjct: 123 GGNIGG 128 >d1ue1a_ b.40.4.3 (A:) ssDNA-binding protein {Mycobacterium tuberculosis [TaxId: 1773]} Length = 118 Score = 105 bits (264), Expect = 1e-24 Identities = 26/102 (25%), Positives = 49/102 (48%) Query: 6 NKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELC 65 + ++GNL ADP++R T G + N +A++ DR T E ++ E Sbjct: 3 TTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIWREAA 62 Query: 66 RIVEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSM 107 V + L +G++V + G L+ R ++ + G R E+ + + Sbjct: 63 ENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEI 104 >d3ulla_ b.40.4.3 (A:) ssDNA-binding protein {Human (Homo sapiens), mitochondria [TaxId: 9606]} Length = 115 Score = 101 bits (251), Expect = 4e-23 Identities = 34/115 (29%), Positives = 62/115 (53%), Gaps = 5/115 (4%) Query: 1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNE-----RREKTEWH 55 + SLN+V L+G +G DP +R + + +AT++ W+ + +KT WH Sbjct: 1 LERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWH 60 Query: 56 SVIVFSEELCRIVEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVML 110 + VF L + QY++KGS++Y+EG + ++ D++ R T II +++ L Sbjct: 61 RISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFL 115 >d1v1qa_ b.40.4.3 (A:) Primosomal replication protein N, PriB {Escherichia coli [TaxId: 562]} Length = 111 Score = 85.0 bits (210), Expect = 3e-18 Identities = 15/112 (13%), Positives = 38/112 (33%), Gaps = 7/112 (6%) Query: 4 SLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEE 63 N+++L G + P + + G + ++ R+ VIV Sbjct: 5 MTNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEE--AGFHRQAWCQMPVIVSG-H 61 Query: 64 LCRIVEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRD 115 + + + GS++ ++G + K + N + + ++D Sbjct: 62 ENQAITHSITVGSRITVQGFISCHKAK----NGLSKMVLHAEQIELIDSVDK 109 >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} Length = 271 Score = 28.3 bits (62), Expect = 0.37 Identities = 13/79 (16%), Positives = 22/79 (27%), Gaps = 13/79 (16%) Query: 33 RIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIE-GSLQTRK--- 88 + +S V E E + +Y G V +E G Q + Sbjct: 189 YVKSSAHLPKDVLFEPPEA--LFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKK 246 Query: 89 -------WQDQSGNNRYTT 100 +D +G R+ Sbjct: 247 IVSDTVFLKDSAGKYRFLL 265 >d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase GlpQ {Escherichia coli [TaxId: 562]} Length = 328 Score = 25.5 bits (54), Expect = 2.4 Identities = 16/102 (15%), Positives = 34/102 (33%), Gaps = 10/102 (9%) Query: 13 NLGAD---PDVRHTQDGRKIVNIRIATSDSWKDRVTN--ERREKTEWHSVIVFSEELCRI 67 GAD D+ T+D +V D + DRVT+ +R ++ + Sbjct: 28 AQGADYLEQDLVMTKDDNLVV-----LHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLD 82 Query: 68 VEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVM 109 + L+ IE + + + + + + + Sbjct: 83 EIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEI 124 >d1em8a_ c.128.1.1 (A:) DNA polymerase III chi subunit {Escherichia coli [TaxId: 562]} Length = 147 Score = 23.7 bits (51), Expect = 7.3 Identities = 6/16 (37%), Positives = 8/16 (50%) Query: 65 CRIVEQYLRKGSKVYI 80 C I + R G +V I Sbjct: 26 CEIAAERWRSGKRVLI 41 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.314 0.131 0.371 Gapped Lambda K H 0.267 0.0493 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 583,746 Number of extensions: 24520 Number of successful extensions: 63 Number of sequences better than 10.0: 1 Number of HSP's gapped: 59 Number of HSP's successfully gapped: 15 Length of query: 159 Length of database: 2,407,596 Length adjustment: 78 Effective length of query: 81 Effective length of database: 1,336,656 Effective search space: 108269136 Effective search space used: 108269136 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 49 (23.2 bits)