RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780183|ref|YP_003064596.1| single-strand binding protein
(ssb) [Candidatus Liberibacter asiaticus str. psy62]
(159 letters)
>d1se8a_ b.40.4.3 (A:) ssDNA-binding protein {Deinococcus
radiodurans [TaxId: 1299]}
Length = 231
Score = 131 bits (330), Expect = 3e-32
Identities = 34/140 (24%), Positives = 57/140 (40%), Gaps = 1/140 (0%)
Query: 4 SLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEE 63
+N V LIG L DP++R+T +G + +A D R +H V + +
Sbjct: 2 GMNHVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIGN-DGRERNLPWYHRVSILGKP 60
Query: 64 LCRIVEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSLQGEEQR 123
E+ L+ G V +EG+L+ R+W+ G R + M L + + +Q
Sbjct: 61 AEWQAERNLKGGDAVVVEGTLEYRQWEAPEGGKRSAVNVKALRMEQLGTQPELIQDAGGG 120
Query: 124 SEQHSNNLKENVVGNRYSSP 143
+ V+GN P
Sbjct: 121 VRMSGAMNEVLVLGNVTRDP 140
Score = 105 bits (263), Expect = 2e-24
Identities = 32/111 (28%), Positives = 63/111 (56%), Gaps = 3/111 (2%)
Query: 1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVF 60
M ++N+V+++GN+ DP++R+T G ++++ IA +++++DR +R+EK + ++
Sbjct: 123 MSGAMNEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDR-QGQRQEKVHYIDATLW 181
Query: 61 SEELCRIVEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLD 111
+ + + LRKG V I G L W D+ GN R +T + + L
Sbjct: 182 RDLAENM--KELRKGDPVMIMGRLVNEGWTDKDGNKRNSTRVEATRVEALA 230
>d1qvca_ b.40.4.3 (A:) ssDNA-binding protein {Escherichia coli
[TaxId: 562]}
Length = 145
Score = 112 bits (282), Expect = 1e-26
Identities = 61/126 (48%), Positives = 85/126 (67%), Gaps = 4/126 (3%)
Query: 4 SLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEE 63
+NKVIL+GNLG DP+VR+ +G + NI +ATS+SW+D+ T E +E+TEWH +V +
Sbjct: 4 GVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHR-VVLFGK 62
Query: 64 LCRIVEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMR---SMVMLDGRRDSLQGE 120
L + +YLRKGS+VYIEG L+TRKW DQSG +RYTTE+++ +M ML GR+
Sbjct: 63 LAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPA 122
Query: 121 EQRSEQ 126
Sbjct: 123 GGNIGG 128
>d1ue1a_ b.40.4.3 (A:) ssDNA-binding protein {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 118
Score = 105 bits (264), Expect = 1e-24
Identities = 26/102 (25%), Positives = 49/102 (48%)
Query: 6 NKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEELC 65
+ ++GNL ADP++R T G + N +A++ DR T E ++ E
Sbjct: 3 TTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIWREAA 62
Query: 66 RIVEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSM 107
V + L +G++V + G L+ R ++ + G R E+ + +
Sbjct: 63 ENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEI 104
>d3ulla_ b.40.4.3 (A:) ssDNA-binding protein {Human (Homo sapiens),
mitochondria [TaxId: 9606]}
Length = 115
Score = 101 bits (251), Expect = 4e-23
Identities = 34/115 (29%), Positives = 62/115 (53%), Gaps = 5/115 (4%)
Query: 1 MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNE-----RREKTEWH 55
+ SLN+V L+G +G DP +R + + +AT++ W+ + +KT WH
Sbjct: 1 LERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWH 60
Query: 56 SVIVFSEELCRIVEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVML 110
+ VF L + QY++KGS++Y+EG + ++ D++ R T II +++ L
Sbjct: 61 RISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFL 115
>d1v1qa_ b.40.4.3 (A:) Primosomal replication protein N, PriB
{Escherichia coli [TaxId: 562]}
Length = 111
Score = 85.0 bits (210), Expect = 3e-18
Identities = 15/112 (13%), Positives = 38/112 (33%), Gaps = 7/112 (6%)
Query: 4 SLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVFSEE 63
N+++L G + P + + G + ++ R+ VIV
Sbjct: 5 MTNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEE--AGFHRQAWCQMPVIVSG-H 61
Query: 64 LCRIVEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRD 115
+ + + GS++ ++G + K + N + + ++D
Sbjct: 62 ENQAITHSITVGSRITVQGFISCHKAK----NGLSKMVLHAEQIELIDSVDK 109
>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK
{Thermotoga maritima [TaxId: 2336]}
Length = 271
Score = 28.3 bits (62), Expect = 0.37
Identities = 13/79 (16%), Positives = 22/79 (27%), Gaps = 13/79 (16%)
Query: 33 RIATSDSWKDRVTNERREKTEWHSVIVFSEELCRIVEQYLRKGSKVYIE-GSLQTRK--- 88
+ +S V E E + +Y G V +E G Q +
Sbjct: 189 YVKSSAHLPKDVLFEPPEA--LFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKK 246
Query: 89 -------WQDQSGNNRYTT 100
+D +G R+
Sbjct: 247 IVSDTVFLKDSAGKYRFLL 265
>d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase
GlpQ {Escherichia coli [TaxId: 562]}
Length = 328
Score = 25.5 bits (54), Expect = 2.4
Identities = 16/102 (15%), Positives = 34/102 (33%), Gaps = 10/102 (9%)
Query: 13 NLGAD---PDVRHTQDGRKIVNIRIATSDSWKDRVTN--ERREKTEWHSVIVFSEELCRI 67
GAD D+ T+D +V D + DRVT+ +R ++ +
Sbjct: 28 AQGADYLEQDLVMTKDDNLVV-----LHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLD 82
Query: 68 VEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVM 109
+ L+ IE + + + + + + +
Sbjct: 83 EIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEI 124
>d1em8a_ c.128.1.1 (A:) DNA polymerase III chi subunit
{Escherichia coli [TaxId: 562]}
Length = 147
Score = 23.7 bits (51), Expect = 7.3
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 65 CRIVEQYLRKGSKVYI 80
C I + R G +V I
Sbjct: 26 CEIAAERWRSGKRVLI 41
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.131 0.371
Gapped
Lambda K H
0.267 0.0493 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 583,746
Number of extensions: 24520
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 15
Length of query: 159
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,336,656
Effective search space: 108269136
Effective search space used: 108269136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.2 bits)