BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780183|ref|YP_003064596.1| single-strand binding protein
(ssb) [Candidatus Liberibacter asiaticus str. psy62]
         (159 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780183|ref|YP_003064596.1| single-strand binding protein (ssb) [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 159

 Score =  326 bits (835), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 159/159 (100%), Positives = 159/159 (100%)

Query: 1   MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVF 60
           MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVF
Sbjct: 1   MVASLNKVILIGNLGADPDVRHTQDGRKIVNIRIATSDSWKDRVTNERREKTEWHSVIVF 60

Query: 61  SEELCRIVEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSLQGE 120
           SEELCRIVEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSLQGE
Sbjct: 61  SEELCRIVEQYLRKGSKVYIEGSLQTRKWQDQSGNNRYTTEIIMRSMVMLDGRRDSLQGE 120

Query: 121 EQRSEQHSNNLKENVVGNRYSSPREESVFSDELDDEIPF 159
           EQRSEQHSNNLKENVVGNRYSSPREESVFSDELDDEIPF
Sbjct: 121 EQRSEQHSNNLKENVVGNRYSSPREESVFSDELDDEIPF 159


>gi|254780564|ref|YP_003064977.1| hypothetical protein CLIBASIA_02255 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 107

 Score = 29.3 bits (64), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 64  LCRIVEQYLRKGSKVY--IEGSLQTRKWQDQSGNNRYTTEII 103
           L  IV+QY+      Y  I+G +  RK+ DQ+  NR + E+I
Sbjct: 58  LLPIVQQYIATALGEYPIIKGIITNRKFNDQTYTNRESFELI 99


>gi|254780644|ref|YP_003065057.1| hypothetical protein CLIBASIA_02655 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 289

 Score = 21.2 bits (43), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 7/18 (38%), Positives = 14/18 (77%)

Query: 122 QRSEQHSNNLKENVVGNR 139
           Q +E+H NNL++ ++ +R
Sbjct: 174 QETEKHINNLQDKILQDR 191


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.314    0.131    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,950
Number of Sequences: 1233
Number of extensions: 3770
Number of successful extensions: 11
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 8
length of query: 159
length of database: 328,796
effective HSP length: 67
effective length of query: 92
effective length of database: 246,185
effective search space: 22649020
effective search space used: 22649020
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 35 (18.1 bits)