RPSBLAST alignment for GI: 254780184 and conserved domain: TIGR00630

>gnl|CDD|161968 TIGR00630, uvra, excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 924
 Score = 1385 bits (3587), Expect = 0.0
 Identities = 546/939 (58%), Positives = 714/939 (76%), Gaps = 18/939 (1%)

Query: 6   NISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSLAFDTIHAEGQRRYVESLSTYAR 65
            I +RGAREHNL+NI +E+PR+KL+V+TG+SGSGKSSLAFDTI+AEGQRRYVESLS YAR
Sbjct: 1   KIIVRGAREHNLKNIDVEIPRDKLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYAR 60

Query: 66  QFLGTIKKPDVEQIDGLSPTISIEQKNTSHNPRSTVGTITEIHDYLRLLFARIGIPHSPT 125
           QFLG + KPDV+ I+GLSP ISI+QK TSHNPRSTVGTITEI+DYLRLLFAR+G P+ P 
Sbjct: 61  QFLGVMDKPDVDSIEGLSPAISIDQKTTSHNPRSTVGTITEIYDYLRLLFARVGTPYCPN 120

Query: 126 TGLPIESQTISQMADRLLSFEQGTRMYLLAPIVRNRKGEYKKELAEILKKGFQRVQIDGV 185
            G PI SQ++SQ+ D++L+  +GTR+ LLAPIVR RKGE++K L ++ K+GF RV++DG 
Sbjct: 121 CGRPISSQSVSQIVDQILALPEGTRVILLAPIVRGRKGEFRKLLEKLRKQGFARVRVDGE 180

Query: 186 FYHISDAPDLDKKYKHTIEVVVDRIVVHENIRERIVNSLRTCLQLTNGLAIATIADSTFH 245
            Y + D P L+K  KHTI+VV+DR+ V    R R+  S+ T L+L +GL      D    
Sbjct: 181 VYPLEDEPKLEKNKKHTIDVVIDRLKVKNENRSRLAESVETALRLGDGLLEVEFDDDE-- 238

Query: 246 NDEKTSPNLSHNSSDHILFSENLSCPVSGFSIAEIEPRIFSFNNPAGACHHCDGLGTRQK 305
                            LFS++ +CP  GFS+ E+EPR+FSFN+P GAC  C GLG +Q+
Sbjct: 239 ----------EPGGKEELFSKHAACPECGFSLPELEPRLFSFNSPYGACPECSGLGIKQE 288

Query: 306 VDEKLVIPNSKLALNNGAIAPWSNPLSAYHTNILTALGKDLGFSINDSWDLLSNENQQIL 365
            D  L+IP+  L+LN GAI P+    ++Y+  +L +L +  GF ++  W  L  E Q+ +
Sbjct: 289 FDPDLIIPDPLLSLNGGAIVPFKKSGTSYYRQMLKSLAEHYGFDLDTPWKDLPEEVQKAV 348

Query: 366 LYGTKKNSIA---LARHKKSSYSNLSFRGIIPTLEKRWSEADSSLLQEIIQRYMSSSPCT 422
           LYG+ +  I         ++   +  F G+IP LE+R+ E +S  ++E ++++MS  PC 
Sbjct: 349 LYGSGEEIIVVKRRNGGGETFRYHKPFEGVIPELERRYLETESESMREYLEKFMSERPCP 408

Query: 423 ICHGYRLKDESLAVKIAGKHIGEIADMSIKKAQIWFEQLPTQITQKANKISESILKEIQK 482
            C G RLK E+LAVK+ GK I +++++SI++A  +F QL   +T +  KI+E ILKEI++
Sbjct: 409 SCGGTRLKPEALAVKVGGKSIADVSELSIREAHEFFNQL--DLTPEEKKIAEEILKEIKE 466

Query: 483 RIHFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNT 542
           R+ FL+++GLDYLTLSR +  LS GE+QRIRLA+QIGS LTGVLY+LDEPSIGLHQRDN 
Sbjct: 467 RLGFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNE 526

Query: 543 KLINTLKHLRDTGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAHPT 602
           +LINTLK LRD GNTVIVVEHDEET+ AAD+++DIGP AGI+GG++VA G+P +I+A+P 
Sbjct: 527 RLINTLKRLRDLGNTVIVVEHDEETIRAADYVIDIGPGAGIHGGEVVASGTPEEILANPD 586

Query: 603 SLTGKYMSGKMSIKIPEKRRQYNPNRMIHVINARSNNLKNVTGSIPLGLFTAITGISGGG 662
           SLTG+Y+SGK  I++P++RR  N  + + +  AR NNLKN+T SIPLGLFT ITG+SG G
Sbjct: 587 SLTGQYLSGKKKIEVPKERRPGNG-KFLTLKGARENNLKNITVSIPLGLFTCITGVSGSG 645

Query: 663 KSTFLISTLYKAAARIIMGSKYNPGIYDRIDGLEYIDKVVSINQSPIGHTPRSNPATYVG 722
           KST +  TLY A AR + G+K  PG Y  I+GLE++DKV+ I+QSPIG TPRSNPATY G
Sbjct: 646 KSTLINDTLYPALARRLNGAKTQPGRYKSIEGLEHLDKVIHIDQSPIGRTPRSNPATYTG 705

Query: 723 AFTPIRDLFSNLPESKACGYKAGCFSFNVKGGRCEVCEGNGVIKIAMHFLPDVYITCDVC 782
            F  IR+LF+  PE+KA GY  G FSFNVKGGRCE C+G+GVIKI MHFLPDVY+ C+VC
Sbjct: 706 VFDEIRELFAETPEAKARGYTPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVC 765

Query: 783 QGQRYNPETLQIRFKDKSIADVLSMTVDESLDFFAAIPTIHNKLTTLKEVGLGYIKIGQS 842
           +G+RYN ETL++++K K+IADVL MTV+E+ +FF A+P+I  KL TL +VGLGYIK+GQ 
Sbjct: 766 KGKRYNRETLEVKYKGKNIADVLDMTVEEAYEFFEAVPSISRKLQTLCDVGLGYIKLGQP 825

Query: 843 ANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSII 902
           A TLSGGE+QR+KLAKELSK++TG TLYILDEPTTGLH+ DI KLL +L  LVD+GN+++
Sbjct: 826 ATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVV 885

Query: 903 VIEHNLEVIKTADWILDFGPEGGDGGGEIIASGPPEAIA 941
           VIEHNL+VIKTAD+I+D GPEGGDGGG I+ASG PE +A
Sbjct: 886 VIEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEVA 924