RPSBLAST alignment for GI: 254780184 and conserved domain: TIGR00630
>gnl|CDD|161968 TIGR00630, uvra, excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 924
Score = 1385 bits (3587), Expect = 0.0
Identities = 546/939 (58%), Positives = 714/939 (76%), Gaps = 18/939 (1%)
Query: 6 NISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSLAFDTIHAEGQRRYVESLSTYAR 65
I +RGAREHNL+NI +E+PR+KL+V+TG+SGSGKSSLAFDTI+AEGQRRYVESLS YAR
Sbjct: 1 KIIVRGAREHNLKNIDVEIPRDKLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYAR 60
Query: 66 QFLGTIKKPDVEQIDGLSPTISIEQKNTSHNPRSTVGTITEIHDYLRLLFARIGIPHSPT 125
QFLG + KPDV+ I+GLSP ISI+QK TSHNPRSTVGTITEI+DYLRLLFAR+G P+ P
Sbjct: 61 QFLGVMDKPDVDSIEGLSPAISIDQKTTSHNPRSTVGTITEIYDYLRLLFARVGTPYCPN 120
Query: 126 TGLPIESQTISQMADRLLSFEQGTRMYLLAPIVRNRKGEYKKELAEILKKGFQRVQIDGV 185
G PI SQ++SQ+ D++L+ +GTR+ LLAPIVR RKGE++K L ++ K+GF RV++DG
Sbjct: 121 CGRPISSQSVSQIVDQILALPEGTRVILLAPIVRGRKGEFRKLLEKLRKQGFARVRVDGE 180
Query: 186 FYHISDAPDLDKKYKHTIEVVVDRIVVHENIRERIVNSLRTCLQLTNGLAIATIADSTFH 245
Y + D P L+K KHTI+VV+DR+ V R R+ S+ T L+L +GL D
Sbjct: 181 VYPLEDEPKLEKNKKHTIDVVIDRLKVKNENRSRLAESVETALRLGDGLLEVEFDDDE-- 238
Query: 246 NDEKTSPNLSHNSSDHILFSENLSCPVSGFSIAEIEPRIFSFNNPAGACHHCDGLGTRQK 305
LFS++ +CP GFS+ E+EPR+FSFN+P GAC C GLG +Q+
Sbjct: 239 ----------EPGGKEELFSKHAACPECGFSLPELEPRLFSFNSPYGACPECSGLGIKQE 288
Query: 306 VDEKLVIPNSKLALNNGAIAPWSNPLSAYHTNILTALGKDLGFSINDSWDLLSNENQQIL 365
D L+IP+ L+LN GAI P+ ++Y+ +L +L + GF ++ W L E Q+ +
Sbjct: 289 FDPDLIIPDPLLSLNGGAIVPFKKSGTSYYRQMLKSLAEHYGFDLDTPWKDLPEEVQKAV 348
Query: 366 LYGTKKNSIA---LARHKKSSYSNLSFRGIIPTLEKRWSEADSSLLQEIIQRYMSSSPCT 422
LYG+ + I ++ + F G+IP LE+R+ E +S ++E ++++MS PC
Sbjct: 349 LYGSGEEIIVVKRRNGGGETFRYHKPFEGVIPELERRYLETESESMREYLEKFMSERPCP 408
Query: 423 ICHGYRLKDESLAVKIAGKHIGEIADMSIKKAQIWFEQLPTQITQKANKISESILKEIQK 482
C G RLK E+LAVK+ GK I +++++SI++A +F QL +T + KI+E ILKEI++
Sbjct: 409 SCGGTRLKPEALAVKVGGKSIADVSELSIREAHEFFNQL--DLTPEEKKIAEEILKEIKE 466
Query: 483 RIHFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNT 542
R+ FL+++GLDYLTLSR + LS GE+QRIRLA+QIGS LTGVLY+LDEPSIGLHQRDN
Sbjct: 467 RLGFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNE 526
Query: 543 KLINTLKHLRDTGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAHPT 602
+LINTLK LRD GNTVIVVEHDEET+ AAD+++DIGP AGI+GG++VA G+P +I+A+P
Sbjct: 527 RLINTLKRLRDLGNTVIVVEHDEETIRAADYVIDIGPGAGIHGGEVVASGTPEEILANPD 586
Query: 603 SLTGKYMSGKMSIKIPEKRRQYNPNRMIHVINARSNNLKNVTGSIPLGLFTAITGISGGG 662
SLTG+Y+SGK I++P++RR N + + + AR NNLKN+T SIPLGLFT ITG+SG G
Sbjct: 587 SLTGQYLSGKKKIEVPKERRPGNG-KFLTLKGARENNLKNITVSIPLGLFTCITGVSGSG 645
Query: 663 KSTFLISTLYKAAARIIMGSKYNPGIYDRIDGLEYIDKVVSINQSPIGHTPRSNPATYVG 722
KST + TLY A AR + G+K PG Y I+GLE++DKV+ I+QSPIG TPRSNPATY G
Sbjct: 646 KSTLINDTLYPALARRLNGAKTQPGRYKSIEGLEHLDKVIHIDQSPIGRTPRSNPATYTG 705
Query: 723 AFTPIRDLFSNLPESKACGYKAGCFSFNVKGGRCEVCEGNGVIKIAMHFLPDVYITCDVC 782
F IR+LF+ PE+KA GY G FSFNVKGGRCE C+G+GVIKI MHFLPDVY+ C+VC
Sbjct: 706 VFDEIRELFAETPEAKARGYTPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVC 765
Query: 783 QGQRYNPETLQIRFKDKSIADVLSMTVDESLDFFAAIPTIHNKLTTLKEVGLGYIKIGQS 842
+G+RYN ETL++++K K+IADVL MTV+E+ +FF A+P+I KL TL +VGLGYIK+GQ
Sbjct: 766 KGKRYNRETLEVKYKGKNIADVLDMTVEEAYEFFEAVPSISRKLQTLCDVGLGYIKLGQP 825
Query: 843 ANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSII 902
A TLSGGE+QR+KLAKELSK++TG TLYILDEPTTGLH+ DI KLL +L LVD+GN+++
Sbjct: 826 ATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVV 885
Query: 903 VIEHNLEVIKTADWILDFGPEGGDGGGEIIASGPPEAIA 941
VIEHNL+VIKTAD+I+D GPEGGDGGG I+ASG PE +A
Sbjct: 886 VIEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEVA 924