RPSBLAST alignment for GI: 254780184 and conserved domain: COG0178
>gnl|CDD|30527 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]. Length = 935
Score = 1416 bits (3667), Expect = 0.0
Identities = 585/960 (60%), Positives = 739/960 (76%), Gaps = 28/960 (2%)
Query: 2 SKIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSLAFDTIHAEGQRRYVESLS 61
+ I IRGAREHNL+NI +E+PRNKL+V+TG+SGSGKSSLAFDTI+AEGQRRYVESLS
Sbjct: 1 MMMDKIRIRGAREHNLKNIDLEIPRNKLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLS 60
Query: 62 TYARQFLGTIKKPDVEQIDGLSPTISIEQKNTSHNPRSTVGTITEIHDYLRLLFARIGIP 121
YARQFLG + KPDV+ I+GLSP ISI+QK TSHNPRSTVGT+TEI+DYLRLLFAR+G P
Sbjct: 61 AYARQFLGQMDKPDVDSIEGLSPAISIDQKTTSHNPRSTVGTVTEIYDYLRLLFARVGTP 120
Query: 122 HSPTTGLPIESQTISQMADRLLSFEQGTRMYLLAPIVRNRKGEYKKELAEILKKGFQRVQ 181
+ P GLPIESQT+SQ+ DR+L+ +GT++ +LAP+VR RKGE+KK L ++ K+GF RV+
Sbjct: 121 YCPNCGLPIESQTVSQIVDRILALPEGTKIQILAPVVRGRKGEHKKLLEQLRKQGFVRVR 180
Query: 182 IDGVFYHISDAPDLDKKYKHTIEVVVDRIVVHENIRERIVNSLRTCLQLTNGLAIATIAD 241
+DG P LDK KHTIEVVVDR+VV E++R R+ +S+ T L+L +GLA+ + D
Sbjct: 181 VDGEV----YEPKLDKNKKHTIEVVVDRLVVKEDLRSRLADSIETALKLADGLAVVEVMD 236
Query: 242 STFHNDEKTSPNLSHNSSDHILFSENLSCPVSGFSIAEIEPRIFSFNNPAGACHHCDGLG 301
+ +LFSEN +CPV GFSI E+EPR+FSFN+P GAC CDGLG
Sbjct: 237 D-----------------EELLFSENFACPVCGFSIPELEPRLFSFNSPFGACPTCDGLG 279
Query: 302 TRQKVDEKLVIPNSKLALNNGAIAPWSNPLSAYHTNILTALGKDLGFSINDSWDLLSNEN 361
+ +VD LVIP+ L+LN GAIAPW N ++Y+ +L AL + GF ++ W L E
Sbjct: 280 VKLEVDPDLVIPDPNLSLNEGAIAPWGNT-NSYYLQMLQALAEHYGFDLDTPWKDLPEEQ 338
Query: 362 QQILLYGTKKNSIALARHKKS---SYSNLSFRGIIPTLEKRWSEADSSLLQEIIQRYMSS 418
Q I+LYG+ I + + ++ F G+IP LE+R+ E +S ++E +++YMS
Sbjct: 339 QDIILYGSGDEVIPFYFNDRGGTKKRTHKPFEGVIPNLERRYLETESESIREELEKYMSE 398
Query: 419 SPCTICHGYRLKDESLAVKIAGKHIGEIADMSIKKAQIWFEQLPTQITQKANKISESILK 478
PC C G RLK E+LAVKIAGK+I EI++MSI A +FE L +++K KI+E ILK
Sbjct: 399 KPCPSCKGTRLKPEALAVKIAGKNIAEISEMSIADALEFFENLK--LSEKEKKIAEPILK 456
Query: 479 EIQKRIHFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQ 538
EI++R+ FLV++GL YLTLSR++ LS GE+QRIRLA+QIGS LTGVLY+LDEPSIGLHQ
Sbjct: 457 EIKERLGFLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQ 516
Query: 539 RDNTKLINTLKHLRDTGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGSPSQII 598
RDN +LI TLK LRD GNTVIVVEHDE+T+ AADHI+DIGP AG +GG+IVAEG+P +++
Sbjct: 517 RDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELL 576
Query: 599 AHPTSLTGKYMSGKMSIKIPEKRRQYNPNRMIHVINARSNNLKNVTGSIPLGLFTAITGI 658
A+P SLTG+Y+SGK +I++P+KRR N + + AR NNLKN+ IPLG+FT +TG+
Sbjct: 577 ANPESLTGQYLSGKKTIEVPKKRRAPNGK-WLELKGARRNNLKNIDVEIPLGVFTCVTGV 635
Query: 659 SGGGKSTFLISTLYKAAARIIMGSKYNPGIYDRIDGLEYIDKVVSINQSPIGHTPRSNPA 718
SG GKST + TL A AR + G+K PG Y +I+GLE+IDKV+ I+QSPIG TPRSNPA
Sbjct: 636 SGSGKSTLINDTLVPALARHLNGTKEEPGPYKKIEGLEHIDKVIDIDQSPIGRTPRSNPA 695
Query: 719 TYVGAFTPIRDLFSNLPESKACGYKAGCFSFNVKGGRCEVCEGNGVIKIAMHFLPDVYIT 778
TY G F IR+LF+ PE+KA GYK G FSFNVKGGRCE C+G+GVIKI MHFLPDVY+
Sbjct: 696 TYTGVFDDIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVP 755
Query: 779 CDVCQGQRYNPETLQIRFKDKSIADVLSMTVDESLDFFAAIPTIHNKLTTLKEVGLGYIK 838
C+VC G+RYN ETL++++K K+IADVL MTV+E+L+FF AIP I KL TL +VGLGYIK
Sbjct: 756 CEVCHGKRYNRETLEVKYKGKNIADVLDMTVEEALEFFEAIPKIARKLQTLVDVGLGYIK 815
Query: 839 IGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRG 898
+GQ A TLSGGE+QRVKLAKELSK++TG TLYILDEPTTGLH+ DI KLL +LH LVD+G
Sbjct: 816 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKG 875
Query: 899 NSIIVIEHNLEVIKTADWILDFGPEGGDGGGEIIASGPPEAIAKEPLSYTGKFLKSILKN 958
N++IVIEHNL+VIKTADWI+D GPEGGDGGGEI+ASG PE +AK SYTGK+LK LK
Sbjct: 876 NTVIVIEHNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASYTGKYLKKYLKR 935