RPSBLAST alignment for GI: 254780184 and conserved domain: COG0178

>gnl|CDD|30527 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]. Length = 935
 Score = 1416 bits (3667), Expect = 0.0
 Identities = 585/960 (60%), Positives = 739/960 (76%), Gaps = 28/960 (2%)

Query: 2   SKIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSLAFDTIHAEGQRRYVESLS 61
             +  I IRGAREHNL+NI +E+PRNKL+V+TG+SGSGKSSLAFDTI+AEGQRRYVESLS
Sbjct: 1   MMMDKIRIRGAREHNLKNIDLEIPRNKLVVITGLSGSGKSSLAFDTIYAEGQRRYVESLS 60

Query: 62  TYARQFLGTIKKPDVEQIDGLSPTISIEQKNTSHNPRSTVGTITEIHDYLRLLFARIGIP 121
            YARQFLG + KPDV+ I+GLSP ISI+QK TSHNPRSTVGT+TEI+DYLRLLFAR+G P
Sbjct: 61  AYARQFLGQMDKPDVDSIEGLSPAISIDQKTTSHNPRSTVGTVTEIYDYLRLLFARVGTP 120

Query: 122 HSPTTGLPIESQTISQMADRLLSFEQGTRMYLLAPIVRNRKGEYKKELAEILKKGFQRVQ 181
           + P  GLPIESQT+SQ+ DR+L+  +GT++ +LAP+VR RKGE+KK L ++ K+GF RV+
Sbjct: 121 YCPNCGLPIESQTVSQIVDRILALPEGTKIQILAPVVRGRKGEHKKLLEQLRKQGFVRVR 180

Query: 182 IDGVFYHISDAPDLDKKYKHTIEVVVDRIVVHENIRERIVNSLRTCLQLTNGLAIATIAD 241
           +DG        P LDK  KHTIEVVVDR+VV E++R R+ +S+ T L+L +GLA+  + D
Sbjct: 181 VDGEV----YEPKLDKNKKHTIEVVVDRLVVKEDLRSRLADSIETALKLADGLAVVEVMD 236

Query: 242 STFHNDEKTSPNLSHNSSDHILFSENLSCPVSGFSIAEIEPRIFSFNNPAGACHHCDGLG 301
                             + +LFSEN +CPV GFSI E+EPR+FSFN+P GAC  CDGLG
Sbjct: 237 D-----------------EELLFSENFACPVCGFSIPELEPRLFSFNSPFGACPTCDGLG 279

Query: 302 TRQKVDEKLVIPNSKLALNNGAIAPWSNPLSAYHTNILTALGKDLGFSINDSWDLLSNEN 361
            + +VD  LVIP+  L+LN GAIAPW N  ++Y+  +L AL +  GF ++  W  L  E 
Sbjct: 280 VKLEVDPDLVIPDPNLSLNEGAIAPWGNT-NSYYLQMLQALAEHYGFDLDTPWKDLPEEQ 338

Query: 362 QQILLYGTKKNSIALARHKKS---SYSNLSFRGIIPTLEKRWSEADSSLLQEIIQRYMSS 418
           Q I+LYG+    I    + +      ++  F G+IP LE+R+ E +S  ++E +++YMS 
Sbjct: 339 QDIILYGSGDEVIPFYFNDRGGTKKRTHKPFEGVIPNLERRYLETESESIREELEKYMSE 398

Query: 419 SPCTICHGYRLKDESLAVKIAGKHIGEIADMSIKKAQIWFEQLPTQITQKANKISESILK 478
            PC  C G RLK E+LAVKIAGK+I EI++MSI  A  +FE L   +++K  KI+E ILK
Sbjct: 399 KPCPSCKGTRLKPEALAVKIAGKNIAEISEMSIADALEFFENLK--LSEKEKKIAEPILK 456

Query: 479 EIQKRIHFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQ 538
           EI++R+ FLV++GL YLTLSR++  LS GE+QRIRLA+QIGS LTGVLY+LDEPSIGLHQ
Sbjct: 457 EIKERLGFLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQ 516

Query: 539 RDNTKLINTLKHLRDTGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGSPSQII 598
           RDN +LI TLK LRD GNTVIVVEHDE+T+ AADHI+DIGP AG +GG+IVAEG+P +++
Sbjct: 517 RDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELL 576

Query: 599 AHPTSLTGKYMSGKMSIKIPEKRRQYNPNRMIHVINARSNNLKNVTGSIPLGLFTAITGI 658
           A+P SLTG+Y+SGK +I++P+KRR  N    + +  AR NNLKN+   IPLG+FT +TG+
Sbjct: 577 ANPESLTGQYLSGKKTIEVPKKRRAPNGK-WLELKGARRNNLKNIDVEIPLGVFTCVTGV 635

Query: 659 SGGGKSTFLISTLYKAAARIIMGSKYNPGIYDRIDGLEYIDKVVSINQSPIGHTPRSNPA 718
           SG GKST +  TL  A AR + G+K  PG Y +I+GLE+IDKV+ I+QSPIG TPRSNPA
Sbjct: 636 SGSGKSTLINDTLVPALARHLNGTKEEPGPYKKIEGLEHIDKVIDIDQSPIGRTPRSNPA 695

Query: 719 TYVGAFTPIRDLFSNLPESKACGYKAGCFSFNVKGGRCEVCEGNGVIKIAMHFLPDVYIT 778
           TY G F  IR+LF+  PE+KA GYK G FSFNVKGGRCE C+G+GVIKI MHFLPDVY+ 
Sbjct: 696 TYTGVFDDIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVP 755

Query: 779 CDVCQGQRYNPETLQIRFKDKSIADVLSMTVDESLDFFAAIPTIHNKLTTLKEVGLGYIK 838
           C+VC G+RYN ETL++++K K+IADVL MTV+E+L+FF AIP I  KL TL +VGLGYIK
Sbjct: 756 CEVCHGKRYNRETLEVKYKGKNIADVLDMTVEEALEFFEAIPKIARKLQTLVDVGLGYIK 815

Query: 839 IGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRG 898
           +GQ A TLSGGE+QRVKLAKELSK++TG TLYILDEPTTGLH+ DI KLL +LH LVD+G
Sbjct: 816 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKG 875

Query: 899 NSIIVIEHNLEVIKTADWILDFGPEGGDGGGEIIASGPPEAIAKEPLSYTGKFLKSILKN 958
           N++IVIEHNL+VIKTADWI+D GPEGGDGGGEI+ASG PE +AK   SYTGK+LK  LK 
Sbjct: 876 NTVIVIEHNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASYTGKYLKKYLKR 935