>gnl|CDD|73030 cd03271, ABC_UvrA_II, The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 261

Score = 410 bits (1056), Expect = e-115 Identities = 171/308 (55%), Positives = 213/308 (69%), Gaps = 47/308 (15%) Query: 630 IHVINARSNNLKNVTGSIPLGLFTAITGISGGGKSTFLISTLYKAAARIIMGSKYNPGIY 689 + + AR NNLKN+ IPLG+ T +TG+SG GKS+ + TLY A AR + K PG + Sbjct: 1 LTLKGARENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNH 60 Query: 690 DRIDGLEYIDKVVSINQSPIGHTPRSNPATYVGAFTPIRDLFSNLPESKACGYKAGCFSF 749 DRI+GLE+IDKV+ I+QSPIG TPRSNPATY G F IR+LF Sbjct: 61 DRIEGLEHIDKVIVIDQSPIGRTPRSNPATYTGVFDEIRELF------------------ 102 Query: 750 NVKGGRCEVCEGNGVIKIAMHFLPDVYITCDVCQGQRYNPETLQIRFKDKSIADVLSMTV 809 C+VC+G+RYN ETL++R+K KSIADVL MTV Sbjct: 103 -----------------------------CEVCKGKRYNRETLEVRYKGKSIADVLDMTV 133 Query: 810 DESLDFFAAIPTIHNKLTTLKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTL 869 +E+L+FF IP I KL TL +VGLGYIK+GQ A TLSGGE+QR+KLAKELSK++TG TL Sbjct: 134 EEALEFFENIPKIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTL 193 Query: 870 YILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEHNLEVIKTADWILDFGPEGGDGGG 929 YILDEPTTGLH+HD+ KLL +L LVD+GN+++VIEHNL+VIK ADWI+D GPEGGDGGG Sbjct: 194 YILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWIIDLGPEGGDGGG 253 Query: 930 EIIASGPP 937 +++ASG P Sbjct: 254 QVVASGTP 261

RPSBLAST alignment for GI: 254780184 and conserved domain: cd03271