BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A
[Candidatus Liberibacter asiaticus str. psy62]
(959 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str.
psy62]
Length = 959
Score = 1971 bits (5107), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 959/959 (100%), Positives = 959/959 (100%)
Query: 1 MSKIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSLAFDTIHAEGQRRYVESL 60
MSKIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSLAFDTIHAEGQRRYVESL
Sbjct: 1 MSKIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSLAFDTIHAEGQRRYVESL 60
Query: 61 STYARQFLGTIKKPDVEQIDGLSPTISIEQKNTSHNPRSTVGTITEIHDYLRLLFARIGI 120
STYARQFLGTIKKPDVEQIDGLSPTISIEQKNTSHNPRSTVGTITEIHDYLRLLFARIGI
Sbjct: 61 STYARQFLGTIKKPDVEQIDGLSPTISIEQKNTSHNPRSTVGTITEIHDYLRLLFARIGI 120
Query: 121 PHSPTTGLPIESQTISQMADRLLSFEQGTRMYLLAPIVRNRKGEYKKELAEILKKGFQRV 180
PHSPTTGLPIESQTISQMADRLLSFEQGTRMYLLAPIVRNRKGEYKKELAEILKKGFQRV
Sbjct: 121 PHSPTTGLPIESQTISQMADRLLSFEQGTRMYLLAPIVRNRKGEYKKELAEILKKGFQRV 180
Query: 181 QIDGVFYHISDAPDLDKKYKHTIEVVVDRIVVHENIRERIVNSLRTCLQLTNGLAIATIA 240
QIDGVFYHISDAPDLDKKYKHTIEVVVDRIVVHENIRERIVNSLRTCLQLTNGLAIATIA
Sbjct: 181 QIDGVFYHISDAPDLDKKYKHTIEVVVDRIVVHENIRERIVNSLRTCLQLTNGLAIATIA 240
Query: 241 DSTFHNDEKTSPNLSHNSSDHILFSENLSCPVSGFSIAEIEPRIFSFNNPAGACHHCDGL 300
DSTFHNDEKTSPNLSHNSSDHILFSENLSCPVSGFSIAEIEPRIFSFNNPAGACHHCDGL
Sbjct: 241 DSTFHNDEKTSPNLSHNSSDHILFSENLSCPVSGFSIAEIEPRIFSFNNPAGACHHCDGL 300
Query: 301 GTRQKVDEKLVIPNSKLALNNGAIAPWSNPLSAYHTNILTALGKDLGFSINDSWDLLSNE 360
GTRQKVDEKLVIPNSKLALNNGAIAPWSNPLSAYHTNILTALGKDLGFSINDSWDLLSNE
Sbjct: 301 GTRQKVDEKLVIPNSKLALNNGAIAPWSNPLSAYHTNILTALGKDLGFSINDSWDLLSNE 360
Query: 361 NQQILLYGTKKNSIALARHKKSSYSNLSFRGIIPTLEKRWSEADSSLLQEIIQRYMSSSP 420
NQQILLYGTKKNSIALARHKKSSYSNLSFRGIIPTLEKRWSEADSSLLQEIIQRYMSSSP
Sbjct: 361 NQQILLYGTKKNSIALARHKKSSYSNLSFRGIIPTLEKRWSEADSSLLQEIIQRYMSSSP 420
Query: 421 CTICHGYRLKDESLAVKIAGKHIGEIADMSIKKAQIWFEQLPTQITQKANKISESILKEI 480
CTICHGYRLKDESLAVKIAGKHIGEIADMSIKKAQIWFEQLPTQITQKANKISESILKEI
Sbjct: 421 CTICHGYRLKDESLAVKIAGKHIGEIADMSIKKAQIWFEQLPTQITQKANKISESILKEI 480
Query: 481 QKRIHFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRD 540
QKRIHFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRD
Sbjct: 481 QKRIHFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRD 540
Query: 541 NTKLINTLKHLRDTGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAH 600
NTKLINTLKHLRDTGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAH
Sbjct: 541 NTKLINTLKHLRDTGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAH 600
Query: 601 PTSLTGKYMSGKMSIKIPEKRRQYNPNRMIHVINARSNNLKNVTGSIPLGLFTAITGISG 660
PTSLTGKYMSGKMSIKIPEKRRQYNPNRMIHVINARSNNLKNVTGSIPLGLFTAITGISG
Sbjct: 601 PTSLTGKYMSGKMSIKIPEKRRQYNPNRMIHVINARSNNLKNVTGSIPLGLFTAITGISG 660
Query: 661 GGKSTFLISTLYKAAARIIMGSKYNPGIYDRIDGLEYIDKVVSINQSPIGHTPRSNPATY 720
GGKSTFLISTLYKAAARIIMGSKYNPGIYDRIDGLEYIDKVVSINQSPIGHTPRSNPATY
Sbjct: 661 GGKSTFLISTLYKAAARIIMGSKYNPGIYDRIDGLEYIDKVVSINQSPIGHTPRSNPATY 720
Query: 721 VGAFTPIRDLFSNLPESKACGYKAGCFSFNVKGGRCEVCEGNGVIKIAMHFLPDVYITCD 780
VGAFTPIRDLFSNLPESKACGYKAGCFSFNVKGGRCEVCEGNGVIKIAMHFLPDVYITCD
Sbjct: 721 VGAFTPIRDLFSNLPESKACGYKAGCFSFNVKGGRCEVCEGNGVIKIAMHFLPDVYITCD 780
Query: 781 VCQGQRYNPETLQIRFKDKSIADVLSMTVDESLDFFAAIPTIHNKLTTLKEVGLGYIKIG 840
VCQGQRYNPETLQIRFKDKSIADVLSMTVDESLDFFAAIPTIHNKLTTLKEVGLGYIKIG
Sbjct: 781 VCQGQRYNPETLQIRFKDKSIADVLSMTVDESLDFFAAIPTIHNKLTTLKEVGLGYIKIG 840
Query: 841 QSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNS 900
QSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNS
Sbjct: 841 QSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNS 900
Query: 901 IIVIEHNLEVIKTADWILDFGPEGGDGGGEIIASGPPEAIAKEPLSYTGKFLKSILKNK 959
IIVIEHNLEVIKTADWILDFGPEGGDGGGEIIASGPPEAIAKEPLSYTGKFLKSILKNK
Sbjct: 901 IIVIEHNLEVIKTADWILDFGPEGGDGGGEIIASGPPEAIAKEPLSYTGKFLKSILKNK 959
>gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 348
Score = 43.1 bits (100), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
Query: 502 NMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHL-RDTGNTVIV 560
NMLS G QR+ A + + ++DEP L +L + L L R T++
Sbjct: 168 NMLSGGMKQRVGFARAFATG--APILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIVF 225
Query: 561 VEHD-EETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAHPTS 603
V HD E + I A + GG+I+ G+P +II HP +
Sbjct: 226 VSHDINEAFRLGNRI------AIMEGGRIIQCGTPQEIILHPAN 263
Score = 38.9 bits (89), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 12/115 (10%)
Query: 844 NTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDR-GNSII 902
N LSGG QRV A+ ATG + ++DEP + L +L + L L + +I+
Sbjct: 168 NMLSGGMKQRVGFARAF---ATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTIV 224
Query: 903 VIEHNL-EVIKTADWILDFGPEGGDGGGEIIASGPPEAIAKEPLS-YTGKFLKSI 955
+ H++ E + + I GG II G P+ I P + Y +F++ +
Sbjct: 225 FVSHDINEAFRLGNRIAIM------EGGRIIQCGTPQEIILHPANCYVSEFIQKL 273
Score = 26.2 bits (56), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 20/23 (86%)
Query: 21 SIELPRNKLIVMTGVSGSGKSSL 43
++E+ + +++V+ G+SG+GKS+L
Sbjct: 49 NLEVKKGEILVLMGLSGAGKSTL 71
>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 596
Score = 42.4 bits (98), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 8/113 (7%)
Query: 807 MTVDESLDFFAAIPTIHNKLTTLKEVGLGY-IKIGQSANTLSGGESQRVKLAKELSKQAT 865
M +E + A H+ + +L + GY +G++ + LSGG+ QR+ +A+ + +
Sbjct: 453 MATEEEMIEIAKSANAHDFIMSLPQ---GYDTYVGENGSNLSGGQKQRIAIARAMLRD-- 507
Query: 866 GNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEHNLEVIKTADWIL 918
G+ L +LDE T+ L H + L L+ +G + IVI H + I AD I+
Sbjct: 508 GHIL-VLDEATSALDTHTENLVRQALSRLM-QGRTTIVIAHRISTIIEADHII 558
Score = 36.2 bits (82), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 500 NSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVI 559
N + LS G+ QRI +A + G + +LDE + L + L L G T I
Sbjct: 486 NGSNLSGGQKQRIAIARAM--LRDGHILVLDEATSALDTHTENLVRQALSRLMQ-GRTTI 542
Query: 560 VVEHDEETMLAADHIVDI 577
V+ H T++ ADHI+ I
Sbjct: 543 VIAHRISTIIEADHIIFI 560
>gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of
ABC transporter protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 240
Score = 41.2 bits (95), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 12/105 (11%)
Query: 838 KIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDR 897
K ++ LSGGE QR LAK L ++ L +LDEP G+ + L ++ ++
Sbjct: 119 KYNRNIKDLSGGEFQRALLAKALLRKP---NLLVLDEPLQGIDFPGELSLYELITSVRQS 175
Query: 898 -GNSIIVIEHNLE-VIKTADWILDFGPEGGDGGGEIIASGPPEAI 940
G I++I HNL V+ + D ++ I GPP+ I
Sbjct: 176 TGCGILLISHNLHMVMASTDTVICL-------NNRICYQGPPQTI 213
Score = 27.3 bits (59), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 17 LQNISIELPRNKLIVMTGVSGSGKSSLA 44
LQ+I+ + N+++ + G +GSGKS++A
Sbjct: 26 LQDINFTIKPNEIVTLIGPNGSGKSTIA 53
>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 597
Score = 40.0 bits (92), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 10/115 (8%)
Query: 839 IGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRG 898
+G+ LSGGE QRV +A+ + K + I DE T+ L + L TL +
Sbjct: 487 VGERGLKLSGGEKQRVSIARAILKNP---PIIIFDEATSSLDIITERHIQTALATL-SKN 542
Query: 899 NSIIVIEHNLEVIKTADWILDFGPEGGDGGGEIIASGPPEAIAKEPLSYTGKFLK 953
+ +VI H L I AD I+ F G ++ SG E + + YT + K
Sbjct: 543 RTTLVIAHRLSTITDADNIIVFDQ------GTVVESGSHENLISQGGIYTSMWKK 591
>gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus
Liberibacter asiaticus str. psy62]
Length = 227
Score = 38.5 bits (88), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 9/118 (7%)
Query: 804 VLSMTVDESLDFFAAIPTIHNKLTTLKEVGL-GYIKIGQSAN----TLSGGESQRVKLAK 858
++ +V E++ F I I++K + + L Y+ + Q AN +SGGE QRV + +
Sbjct: 100 LMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRSSDISGGEQQRVAICR 159
Query: 859 ELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDR-GNSIIVIEHNLEVIKTAD 915
++ + + + DEPT L ++ +IL LV R G + ++ HN ++ D
Sbjct: 160 AIANKP---LIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHNHDLASQMD 214
Score = 27.3 bits (59), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 492 LDYLTLS----RNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINT 547
L Y+ +S R S+ +S GE QR+ + I + ++ + DEP+ L + ++ +
Sbjct: 131 LSYMDMSQYANRRSSDISGGEQQRVAICRAIAN--KPLIILADEPTGNLDLKTAQQVFSI 188
Query: 548 LKHL-RDTGNTVIVVEHDEETMLAADHIVDI 577
LK+L +G ++ H+ + D + I
Sbjct: 189 LKYLVVRSGLAALIATHNHDLASQMDRQITI 219
>gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 234
Score = 37.7 bits (86), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 15/99 (15%)
Query: 846 LSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVD-RGNSIIVI 904
+SGG+ QRV LA+ L +Q + +LDEP ++L +L + D R ++++I
Sbjct: 130 MSGGQRQRVALARCLIRQ---KPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMI 186
Query: 905 EHNLE---VIKTADWILDFGPEGGDGGGEIIASGPPEAI 940
HNLE I T ++ GG+I+ G P+ +
Sbjct: 187 SHNLEDSMQIATRFIVI--------AGGQIVYDGDPDRL 217
>gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 539
Score = 37.4 bits (85), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 11/113 (9%)
Query: 841 QSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNS 900
Q +LSGG+ RV LAK L +G + +LDEPT L ++ L + L G +
Sbjct: 434 QRIGSLSGGQRGRVHLAKILK---SGGNVILLDEPTNDLDTETLSALEDALENFA--GCA 488
Query: 901 IIVIEHNLEVIKTADWILDFGPEGGDGGGEI-IASGPPEAIAKEPLSYTGKFL 952
+I+ + + + A IL F +G G + G E K+ LS + + L
Sbjct: 489 VIISHDRMFLDRLATHILAF-----EGNGHVEWFEGNFEEYEKDKLSRSSRVL 536
Score = 25.4 bits (54), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 840 GQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGN 899
G + +LSGGE +RV L K L L EPT L IA + L +
Sbjct: 151 GLNITSLSGGEKRRVALCKLLLSSPDLLLLD---EPTNHLDAETIAWMEKYLR---EYSG 204
Query: 900 SIIVIEHNLEVI-KTADWILD 919
+++++ H+ + +WIL+
Sbjct: 205 AVLMVTHDRYFLDNVTNWILE 225
>gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 262
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 843 ANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSII 902
A LSGG+ +R+++A+ L + + +LDEP G+ I+ + ++ L RG I+
Sbjct: 156 APLLSGGQRRRLEIARSL---VSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL 212
Query: 903 VIEHNLEVIKT 913
+ +HN+ I T
Sbjct: 213 ITDHNVHEILT 223
>gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 257
Score = 36.2 bits (82), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 11/107 (10%)
Query: 852 QRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEHNLEVI 911
QR +A+ L Q + + DEPT+ L + ++L+I+ L + G +++ + H +
Sbjct: 159 QRAAIARSLCMQPK---IMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFA 215
Query: 912 K-TADWILDFGPEGGDGGGEIIASGPPEAIAKEPL-SYTGKFLKSIL 956
+ AD ++ G+I+ PE P T FL I+
Sbjct: 216 RQVADRVVFM------DQGQIVEQNSPEEFFNNPQHERTQAFLSQII 256
Score = 28.9 bits (63), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 15 HNLQNISIELPRNKLIVMTGVSGSGKSSL 43
H L++I++ + R + +++ G SGSGKS+L
Sbjct: 31 HALRDINLNVLRGERVIIAGPSGSGKSTL 59
Score = 26.9 bits (58), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 507 GESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVVEHDEE 566
GESQR +A + + + + DEP+ L ++++ + L + G T++ V H+
Sbjct: 156 GESQRAAIARSL--CMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHE-- 211
Query: 567 TMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAHP 601
M A + D ++ G+IV + SP + +P
Sbjct: 212 -MGFARQVAD--RVVFMDQGQIVEQNSPEEFFNNP 243
>gi|254780139|ref|YP_003064552.1| putative ATP-binding component of ABC transporter [Candidatus
Liberibacter asiaticus str. psy62]
Length = 257
Score = 36.2 bits (82), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 57/119 (47%), Gaps = 15/119 (12%)
Query: 796 FKDKSIADVLSMTVDESLDFFAAI--PTIHNKLTTLKEVGLGYIKIGQSANTLSGGESQR 853
F ++ + +SM + E L+ A + +H K+ VGL LSGG +R
Sbjct: 102 FSSMTVQENISMPIKEHLNLPADLIEHIVHTKIAI---VGLPPETANLMPFQLSGGMIKR 158
Query: 854 VKLAKELSKQATGNTLYILDEPTTGLH---YHDIAKLL-NILHTLVDRGNSIIVIEHNL 908
V LA+ L A L LDEPT+GL + KLL + H+L G S+ +I H+L
Sbjct: 159 VSLARAL---AIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSL---GLSVYMITHDL 211
>gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron)
[Candidatus Liberibacter asiaticus str. psy62]
Length = 280
Score = 36.2 bits (82), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 829 LKEVGLGYIKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLL 888
L+ VG+ ++ Q LS G+ +RV LA+ L++++ + I+DEP + + +++
Sbjct: 132 LENVGMSSMRQRQIGE-LSIGQQKRVFLARALAQKSQ---VIIMDEPFAAIDFKTEREMI 187
Query: 889 NILHTLVDRGNSIIVIEHNLEVI 911
+L +L++ I+V HN+ I
Sbjct: 188 FLLKSLLNEDIMILVSTHNINSI 210
Score = 27.3 bits (59), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 21/27 (77%)
Query: 17 LQNISIELPRNKLIVMTGVSGSGKSSL 43
L+++++ +P N + + G++G+GKS+L
Sbjct: 28 LEDVNLFIPENTITALIGLNGAGKSTL 54
Score = 26.9 bits (58), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 13/78 (16%)
Query: 640 LKNVTGSIPLGLFTAITGISGGGKSTFLISTLYKAAARIIMGSKYNPGIYD-------RI 692
L++V IP TA+ G++G GK STL++A +I K + I++ +
Sbjct: 28 LEDVNLFIPENTITALIGLNGAGK-----STLFQAIMGLIPLDKGSISIFNQTVENALKA 82
Query: 693 DGLEYIDKVVSINQS-PI 709
D + YI + SI+ + PI
Sbjct: 83 DLIAYIPQTESIDWTFPI 100
>gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 254
Score = 35.8 bits (81), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 838 KIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDR 897
++ A+ LSGG+ QRV +A+ L A + ++DEP + L A + ++H L +
Sbjct: 143 RLFHDASLLSGGQQQRVCIARAL---AVNPEVILMDEPCSALDPIATASVEELIHELRE- 198
Query: 898 GNSIIVIEHNLE 909
+I+++ H+++
Sbjct: 199 SLTIVIVTHSMQ 210
Score = 28.9 bits (63), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 17/61 (27%)
Query: 607 KYMSGKMSIKIPEKRRQYNPNRMIHVINARSNNLKNVTGSIPLGLFTAITGISGGGKSTF 666
K +S K+S+ EKR ++ N LK IP TA+ G SG GKSTF
Sbjct: 6 KMISNKVSVCYGEKRALFDIN------------LK-----IPQNSVTALIGPSGCGKSTF 48
Query: 667 L 667
L
Sbjct: 49 L 49
Score = 26.9 bits (58), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 7 ISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSL 43
+S+ + L +I++++P+N + + G SG GKS+
Sbjct: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTF 48
>gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane
subunits [Candidatus Liberibacter asiaticus str. psy62]
Length = 528
Score = 34.3 bits (77), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 839 IGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRG 898
+G A LS G+ QR+ +A+ + K + + +LDE + L + K+ +L RG
Sbjct: 420 LGDGAVHLSTGQIQRIAIARAILKD---SPILLLDEMGSALDIENEQKIWKVLREQ-RRG 475
Query: 899 NSIIVIEHNLEVIKTADWIL 918
+ I H L I+ AD +
Sbjct: 476 RTTIFASHRLSAIQDADMVF 495
Score = 26.2 bits (56), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 20/132 (15%)
Query: 592 GSPSQIIAHPTSLTGKYMSGKMSIKIPEKRRQYNPNRMIHVINARSNN-----------L 640
G SQ IA L + + K+ I P R + P+ ++ ++ RS + L
Sbjct: 249 GGISQAIASLRRLR-ELIVCKLDISSPISSRTF-PSPVLGSVSFRSVSFVYPGKSKRSIL 306
Query: 641 KNVTGSIPLGLFTAITGISGGGKSTF--LISTLYKAAARIIMGSKYNPGIYDRIDGLEYI 698
KNV ++ G A+ G SG GK++ LI Y + GS GI R+ LE I
Sbjct: 307 KNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCS----GSVEIEGIDLRLLSLEEI 362
Query: 699 DKVVS-INQSPI 709
+ ++ + Q PI
Sbjct: 363 RRFIAWVPQHPI 374
>gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter
asiaticus str. psy62]
Length = 565
Score = 32.3 bits (72), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 510 QRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTVIVVEHDEETML 569
Q+IRL+ I + + ++DEP L LK ++ T++++ HD +
Sbjct: 473 QKIRLSRIIAN--NPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTIIS 530
Query: 570 AADHIVDIGPEAG 582
+D + P G
Sbjct: 531 MSDFSLIFHPIQG 543
Score = 30.4 bits (67), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 852 QRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIEHNLEVI 911
Q+++L++ + A + ++DEP L +L + +I++I H+ +I
Sbjct: 473 QKIRLSRII---ANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHDPTII 529
Query: 912 KTADWILDFGPEGGDGGG 929
+D+ L F P G G
Sbjct: 530 SMSDFSLIFHPIQGSLFG 547
Score = 28.9 bits (63), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 5 KNISIRGAREHNL--QNISIELPRNKLIVMTGVSGSGKSSL 43
KNI R + L QN+S +P ++ G SG GKS+
Sbjct: 334 KNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNF 374
Score = 24.3 bits (51), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 641 KNVTGSIPLGLFTAITGISGGGKSTF 666
+N++ +IP G I G SG GKS F
Sbjct: 349 QNLSFTIPEGSCCIIAGPSGCGKSNF 374
>gi|254780334|ref|YP_003064747.1| DNA repair protein RadA [Candidatus Liberibacter asiaticus str.
psy62]
Length = 479
Score = 31.2 bits (69), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 20/126 (15%)
Query: 68 LGTIKKPDVEQIDGLSPTISIEQKNTSHNPRSTVGTITEIHDYLRLLF--------ARIG 119
L T +KPD+ ID + Q S S+ GT+ ++ ++ + A +
Sbjct: 162 LITNEKPDLVIIDSI-------QTLWSQTAESSPGTVIQVRTSVQAMIQYAKKNGVAMVL 214
Query: 120 IPHSPTTGLPIESQTISQMADRLLSFEQGTRM----YLLAPIVRNRKGEYKK-ELAEILK 174
+ H G + I M D +L FE GTR Y + V+NR G + + E+
Sbjct: 215 VGHVTKEGQIAGPRVIEHMVDAVLYFEGGTRNTQYDYRILRSVKNRFGPTDEIGVFEMSD 274
Query: 175 KGFQRV 180
KG Q V
Sbjct: 275 KGLQEV 280
>gi|254780757|ref|YP_003065170.1| glycyl-tRNA synthetase subunit alpha [Candidatus Liberibacter
asiaticus str. psy62]
Length = 307
Score = 25.8 bits (55), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 385 SNLSFRGIIPTLEKRWSEADSSLLQ 409
++LSF+ II TL + W++ ++LQ
Sbjct: 9 NDLSFQNIILTLTQYWAQQGCTILQ 33
>gi|254780348|ref|YP_003064761.1| 5-amino-6-(5-phosphoribosylamino)uracil
reductase/diaminohydroxyphosphoribosylaminopyrimidine
[Candidatus Liberibacter asiaticus str. psy62]
Length = 364
Score = 25.8 bits (55), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 837 IKIGQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHY 881
I IG+ G V+ +E ++A G T Y+ EP + HY
Sbjct: 40 IVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCS--HY 82
>gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 610
Score = 25.0 bits (53), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 17 LQNISIELPRNKLIVMTGVSGSGKSSL 43
LQ++ + + + I + G +GSGKS+L
Sbjct: 21 LQDVCLSIKPKERICLVGCNGSGKSTL 47
>gi|254780567|ref|YP_003064980.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 246
Score = 25.0 bits (53), Expect = 5.7, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 11/84 (13%)
Query: 27 NKLIVMTGVSGSGKSSLAFDTIHAEGQRRYVESLSTYARQFLGTIKKPDVEQIDGLSPTI 86
++++++ G SGSGKS LA I ++ R + +F K D ID P +
Sbjct: 64 SRVVILVGPSGSGKSCLA--NIWSDKSR---------STRFSNIAKSLDSILIDTRKPVL 112
Query: 87 SIEQKNTSHNPRSTVGTITEIHDY 110
+ N I IH Y
Sbjct: 113 LEDIDLLDFNDTQLFHIINSIHQY 136
>gi|254780332|ref|YP_003064745.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 504
Score = 25.0 bits (53), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 24 LPRNKLIVMTGVSGSGKSSLA 44
L R+ LI++ G G GK+SLA
Sbjct: 216 LQRSDLIIIAGRPGMGKTSLA 236
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.317 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 614,986
Number of Sequences: 1233
Number of extensions: 26455
Number of successful extensions: 143
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 75
Number of HSP's gapped (non-prelim): 56
length of query: 959
length of database: 328,796
effective HSP length: 83
effective length of query: 876
effective length of database: 226,457
effective search space: 198376332
effective search space used: 198376332
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 43 (21.2 bits)