HHsearch alignment for GI: 254780185 and conserved domain: COG3968
>COG3968 Uncharacterized protein related to glutamine synthetase [General function prediction only].
Probab=99.92 E-value=8.9e-24 Score=168.02 Aligned_cols=278 Identities=17% Similarity=0.201 Sum_probs=188.8
Q ss_pred EEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 25773133089970677777865477666765457777775003655455635524446899999999998605411222
Q gi|254780185|r 125 TLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNGNNKGYDSHAKSSYTLPPQDKLHDMRSEIVSALNNIGVQITKY 204 (458)
Q Consensus 125 ~~~~g~E~EF~Lf~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~~~~~~~~~~~~ei~~~l~~~Gi~ie~~ 204 (458)
T Consensus 215 ~s~~GaEQEYFlvd~~~~~~RpDLi~-tGRTLFGa~ppkGQEldDHYFG----aipeRV~~FM~Dve~~LyaLGIpaKTr 289 (724)
T COG3968 215 FSNVGAEQEYFLVDKKSYDERPDLIF-TGRTLFGAPPPKGQELDDHYFG----AIPERVSAFMKDVEKELYALGIPAKTR 289 (724)
T ss_pred CCCCCCCCEEEEECHHHCCCCCCEEE-ECHHHCCCCCCCCCCCCCHHCC----CCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 36778431368861101034856266-2402128999987612200012----447999999988999999808853334
Q ss_pred CCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHC-CCCCCCEECCCCCC
Q ss_conf 13356212103655566888776999999999999874497544412101456860120111111-46763122155565
Q gi|254780185|r 205 HNQINDAQHSFGLQSESLLHASDNLQKYKYSVHQVANSYCKIATFMPKPIASHNGSGMYLNMSIH-KGEKAIFTGNQHDR 283 (458)
Q Consensus 205 h~E~gpGQ~Ei~~~~~~~l~aAD~~~~~k~~ik~iA~~~G~~ATFmpKP~~~~~GsG~Hih~Sl~-~~~~n~f~~~~~~~ 283 (458)
T Consensus 290 HNEVAPgQfEIApife~~N~A~DhqQL~M~vLk~tA~KhGlVCLLHEKPFAGiNGSGKH~NWSmGtd~g~NLLdPgD~Ph 369 (724)
T COG3968 290 HNEVAPGQFEIAPIFESGNLATDHQQLVMEVLKKTALKHGLVCLLHEKPFAGINGSGKHNNWSMGTDDGLNLLDPGDMPH 369 (724)
T ss_pred CCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 56558775244100115653320799999999998876255888615875675788775645414687756579999987
Q ss_pred CCHHHHHHHH----HHHHHHHHCCHHCCCCCHHHHHHCCCCCCC-EEE--------------------------------
Q ss_conf 7899999999----999886410000066700144318885212-010--------------------------------
Q gi|254780185|r 284 VSLKGLYYLG----GIIKHAKSLNALTNASTNSYKRLLTDSQSP-TKL-------------------------------- 326 (458)
Q Consensus 284 ls~~~~~fia----Gil~h~~al~a~~~PtvNSYkRl~p~~~ap-~~~-------------------------------- 326 (458)
T Consensus 370 dN~QFL~Fc~AvIkaVdkY~~Ll-Ra~~a~AsNDhRLGAN-EAPPAI~SVflGdqLedifEqi~~G~~~ssk~~g~mdLg 447 (724)
T COG3968 370 DNKQFLLFCTAVIKAVDKYADLL-RASAANASNDHRLGAN-EAPPAIISVFLGDQLEDIFEQIEKGKATSSKGNGKMDLG 447 (724)
T ss_pred CCCEEEHHHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCC-CCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 56000021588998788879999-9987515775345567-799612676403069999999964877666667632443
Q ss_pred ---------EECCCCCCCEEECCCCCCCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHHCCC----CCCCC----
Q ss_conf ---------11368876401025788765412440467532---12799999999999987885599----98665----
Q gi|254780185|r 327 ---------TYSTHNHSASCRIPYENKSDNKSIEIRFPDLS---ANPYLAPAAILMAGLDGIAKKIH----PGKNI---- 386 (458)
Q Consensus 327 ---------~WG~~NR~a~iRip~~~~~~~~riE~R~~da~---aNPYL~lAailaAgl~Gi~~~l~----p~~~~---- 386 (458)
T Consensus 448 ~~vlP~v~kdAgDRNRTSPFAF------TGNkFEFRavgSSqSvs~P~tVLN~~vAesl~~i~drLe~kl~kg~dld~ai 521 (724)
T COG3968 448 ISVLPAVEKDAGDRNRTSPFAF------TGNKFEFRAVGSSQSVSEPNTVLNVIVAESLSEIADRLEGKLRKGSDLDAAI 521 (724)
T ss_pred HHHCCCCCCCCCCCCCCCCCEE------CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 1205566445565567887303------0661368527865445664578889999999999899887763246578899
Q ss_pred ----------------CCCCHH--------HHHCCCCCCCCHHHHHHHHHHCHH
Q ss_conf ----------------578877--------771320001798999999873989
Q gi|254780185|r 387 ----------------DELSLE--------EQNTIPRICISLRESLENLDKDRE 416 (458)
Q Consensus 387 ----------------~~~~~~--------~~~~~~~LP~~L~eAl~~l~~d~~ 416 (458)
T Consensus 522 ~~vl~et~k~h~~vvFnGnGYSeeWhkeAekeRGL~Nlr-TT~dA~~~L~~~kn 574 (724)
T COG3968 522 EAVLTETVKDHKKVVFNGNGYSEEWHKEAEKERGLPNLR-TTVDATKALIADKN 574 (724)
T ss_pred HHHHHHHHHHHCEEEECCCCCCHHHHHHHHHHCCCCHHH-HHHHHHHHHCCHHH
T ss_conf 999999998616687579875489999999853863035-46778887503267