HHsearch alignment for GI: 254780185 and conserved domain: pfam00120
>pfam00120 Gln-synt_C Glutamine synthetase, catalytic domain.
Probab=100.00 E-value=0 Score=594.93 Aligned_cols=255 Identities=36% Similarity=0.571 Sum_probs=230.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHH
Q ss_conf 02555323556799873034522577313308997067777786547766676545777777500365545563552444
Q gi|254780185|r 103 NRDPRYTAQKAIDYLQTTDIGDTLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNGNNKGYDSHAKSSYTLPPQDK 182 (458)
Q Consensus 103 ~~~PR~~Lk~~~~~l~~~~~G~~~~~g~E~EF~Lf~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~~~~~~ 182 (458)
T Consensus 1 P~~PR~~Lk~~~~~~~~--~Gl~~~~g~E~EF~l~~~~~~~~~~~~~-------------~~~~~~~~~~~~y~~~~~~~ 65 (257)
T pfam00120 1 PRDPRSILKRALARLAE--LGYTPYFGPEQEFFLFDDVRPGGGPPGG-------------YPDPRGPYYGGYFPVAPLDE 65 (257)
T ss_pred CCCHHHHHHHHHHHHHH--CCCEEEEEECEEEEEEECCCCCCCCCCC-------------CCCCCCCCCCCCCCCCCCHH
T ss_conf 98979999999999997--6995979956687998577777677668-------------87988876777577763031
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHH
Q ss_conf 68999999999986054112221335621210365556688877699999999999987449754441210145686012
Q gi|254780185|r 183 LHDMRSEIVSALNNIGVQITKYHNQINDAQHSFGLQSESLLHASDNLQKYKYSVHQVANSYCKIATFMPKPIASHNGSGM 262 (458)
Q Consensus 183 ~~~~~~ei~~~l~~~Gi~ie~~h~E~gpGQ~Ei~~~~~~~l~aAD~~~~~k~~ik~iA~~~G~~ATFmpKP~~~~~GsG~ 262 (458)
T Consensus 66 ~~~~~~~i~~~l~~~Gi~ve~~~~E~gpgQ~Ei~l~~~~~l~aAD~~~~~k~~ik~vA~~~G~~atFmpKP~~~~~GsG~ 145 (257)
T pfam00120 66 ARDIRRDIVKALEAAGIPVEGIHHEVAPGQHEIDFRFADALEAADNLQLFKYVVKRVAEKHGLTATFMPKPIFGDNGSGM 145 (257)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEE
T ss_conf 89999999999997799818866575798579962546498886999999999999999839679970354579998521
Q ss_pred HHHHHHCC-CCCCCEEC-CCCCCCCHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHCCCCCCCEEEEECCCCCCCEEECC
Q ss_conf 01111114-67631221-55565789999999999988641000006670014431888521201011368876401025
Q gi|254780185|r 263 YLNMSIHK-GEKAIFTG-NQHDRVSLKGLYYLGGIIKHAKSLNALTNASTNSYKRLLTDSQSPTKLTYSTHNHSASCRIP 340 (458)
Q Consensus 263 Hih~Sl~~-~~~n~f~~-~~~~~ls~~~~~fiaGil~h~~al~a~~~PtvNSYkRl~p~~~ap~~~~WG~~NR~a~iRip 340 (458)
T Consensus 146 HiH~SL~d~~g~n~f~~~~~~~~lS~~~~~fiaGlL~h~~~l~a~~~Pt~NSYkRl~p~~~ap~~~~WG~~NR~a~iRip 225 (257)
T pfam00120 146 HTHQSLWDKDGKNLFADGDGYAGLSETARHFIGGILKHAPAITAYTAPTVNSYKRLVPGTEAPVYIAWGVRNRSASIRIP 225 (257)
T ss_pred EEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCCCEEEC
T ss_conf 79986675889762468887422309999997638775687625368997656515799748666776156786117867
Q ss_pred CCCCCCCCEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 78876541244046753212799999999999
Q gi|254780185|r 341 YENKSDNKSIEIRFPDLSANPYLAPAAILMAG 372 (458)
Q Consensus 341 ~~~~~~~~riE~R~~da~aNPYL~lAailaAg 372 (458)
T Consensus 226 ~~~~~~~~riE~R~~da~aNPYL~lAailaAG 257 (257)
T pfam00120 226 RGGGPKAGRVEDRLPDPDANPYLALAALLAAG 257 (257)
T ss_pred CCCCCCCCEEEECCCCCCCCHHHHHHHHHHCC
T ss_conf 78998774678678878878999999998668