HHsearch alignment of GI: 254780185 and MMDB domain: 1r8g_A_
>1r8g_A (A:) Hypothetical protein YBDK; structural genomics, unknown function, carboxylate-amine ligase, structure 2 function project, S2F; 2.15A {Escherichia coli}
Probab=98.44 E-value=8.3e-06 Score=55.52 Aligned_cols=201 Identities=14% Similarity=0.138 Sum_probs=114.5
Q ss_pred CCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC--CC
Q ss_conf 5225773133089970677777865477666765457777775003655455635524446899999999998605--41
Q gi|254780185|r 123 GDTLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNGNNKGYDSHAKSSYTLPPQDKLHDMRSEIVSALNNIG--VQ 200 (458)
Q Consensus 123 G~~~~~g~E~EF~Lf~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~~~~~~~~~~~~ei~~~l~~~G--i~ 200 (458)
+-...+|+|.|+++++.......+. .-..+..+| ..
T Consensus 9 ~~~~~~GiE~E~~~Vd~~~~~~~~~------------------------------------------~~~ll~~l~~~~~ 46 (372)
T 1r8g_A 9 SEPFTLGIELEXQVVNPPGYDLSQD------------------------------------------SSXLIDAVKNKIT 46 (372)
T ss_dssp CCTTCEEEEEEEEEEETTTTEECSC------------------------------------------CHHHHTTTSSSCS
T ss_pred CCCCCEEEEEEEEEECCCCCCCCCC------------------------------------------HHHHHHHHHCCCC
T ss_conf 9998348887663267998776775------------------------------------------6999997323246
Q ss_pred CCCCCCCCCCHHHCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHCCCEEE---EEE-----------EEC-----------
Q ss_conf 12221335621210365556-6888776999999999999874497544---412-----------101-----------
Q gi|254780185|r 201 ITKYHNQINDAQHSFGLQSE-SLLHASDNLQKYKYSVHQVANSYCKIAT---FMP-----------KPI----------- 254 (458)
Q Consensus 201 ie~~h~E~gpGQ~Ei~~~~~-~~l~aAD~~~~~k~~ik~iA~~~G~~AT---Fmp-----------KP~----------- 254 (458)
-..+..|.+..|+|++..|. +.-.+.+.+...+..+.+++.++|+... +.| ||.
T Consensus 47 ~~~i~~E~~~~~iEl~t~p~~~~~~~~~~l~~~~~~l~~~~~~~g~~l~~~g~~P~~~~~~~~~~~~~rY~~~~~~~~~~ 126 (372)
T 1r8g_A 47 AGEVKHDITESXLELATDVCRDINQAAGQFSAXQKVVLQAATDHHLEICGGGTHPFQKWQRQEVCDNERYQRTLENFGYL 126 (372)
T ss_dssp SSEEEECSSSSEEEEECCSBSSHHHHHHHHHHHHHHHHHHHHHTTCEEECCSBCSSCCC----------------CCGGG
T ss_pred CCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCH
T ss_conf 88611037773699748787999999999999999999987651661243578978983213467607899999860528
Q ss_pred -CCCCCCHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCHHCCCCC---------HHHHHHCCCCCCCE
Q ss_conf -45686012011111146763122155565789999999999988641000006670---------01443188852120
Q gi|254780185|r 255 -ASHNGSGMYLNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGIIKHAKSLNALTNAST---------NSYKRLLTDSQSPT 324 (458)
Q Consensus 255 -~~~~GsG~Hih~Sl~~~~~n~f~~~~~~~ls~~~~~fiaGil~h~~al~a~~~Ptv---------NSYkRl~p~~~ap~ 324 (458)
....-+|+|||+|+-+. +..-.-+..+..+.|.+.||++.+. -|||-..-+.+-..
T Consensus 127 ~~~~~~~g~hvn~~~~~~--------------~~~~~~~~~~~~~~p~l~aL~anSP~~~G~~tg~~S~R~~~~~~~~~~ 192 (372)
T 1r8g_A 127 IQQATVFGQHVHVGCASG--------------DDAIYLLHGLSRFVPHFIALSAASPYXQGTDTRFASSRPNIFSAFPDN 192 (372)
T ss_dssp GCSCCBCEEEEEEECSSH--------------HHHHHHHHHHHTTHHHHHHHHCCBCEETTEECSCSBCGGGGGTTSTTC
T ss_pred HHHHHHCCCEEECCCCCH--------------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 877400152475588999--------------999999999999989999986389000599885431057887218676
Q ss_pred EEEECCCCCCC------------EEE------CCCCCCCCCCEEEECCCCCCCCH--HHHHHHHHHHHHHHHHHC
Q ss_conf 10113688764------------010------25788765412440467532127--999999999999878855
Q gi|254780185|r 325 KLTYSTHNHSA------------SCR------IPYENKSDNKSIEIRFPDLSANP--YLAPAAILMAGLDGIAKK 379 (458)
Q Consensus 325 ~~~WG~~NR~a------------~iR------ip~~~~~~~~riE~R~~da~aNP--YL~lAailaAgl~Gi~~~ 379 (458)
...+-+++... .+. .+.-..+...+||+|+.|....+ +.+.++.+.+-+..+-..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~~~iE~R~~D~~p~~~~~~~~~af~~~l~~~~~~~ 267 (372)
T 1r8g_A 193 GPXPWVSNWQQFEALFRCLSYTTXIDSIKDLHWDIRPSPHFGTVEVRVXDTPLTLSHAVNXAGLIQATAHWLLTE 267 (372)
T ss_dssp SSCCCCSSHHHHHHHHHHHTTSSSCSSGGGCCCSEEEETTTTEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCEECCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 887545663778999998752460113554122057776666453346789998899999999999999999871