Query gi|254780185|ref|YP_003064598.1| glutamine synthetase protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 458 No_of_seqs 147 out of 2723 Neff 7.4 Searched_HMMs 23785 Date Mon May 23 08:05:24 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780185.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1f52_A Glutamine synthetase; A 100.0 0 0 934.4 39.6 455 4-458 1-468 (468) 2 2bvc_A Glutamine synthetase 1; 100.0 0 0 898.9 42.2 456 3-458 12-486 (486) 3 2j9i_A Glutamate-ammonia ligas 100.0 0 0 847.4 25.1 416 4-457 1-418 (421) 4 3fky_A Glutamine synthetase; b 100.0 0 0 592.6 21.6 353 4-390 8-369 (370) 5 2ojw_A Glutamine synthetase; a 100.0 0 0 564.1 17.4 325 19-375 46-381 (384) 6 2d3a_A Glutamine synthetase; l 100.0 0 0 558.3 21.4 344 3-374 2-353 (356) 7 1r8g_A Hypothetical protein YB 98.6 1.4E-06 5.9E-11 59.4 13.3 95 202-310 48-169 (372) 8 2gwd_A Glutamate cysteine liga 97.0 0.0031 1.3E-07 38.5 8.3 88 125-250 34-137 (449) 9 1u8s_A Glycine cleavage system 63.7 4.2 0.00018 19.0 2.8 80 184-265 104-191 (192) 10 3mjf_A Phosphoribosylamine--gl 39.5 17 0.0007 15.3 3.8 97 125-226 191-301 (431) 11 2jug_A TUBC protein; docking d 32.2 22 0.00091 14.5 3.4 30 1-35 3-32 (78) 12 2iru_A Putative DNA ligase-lik 30.0 23 0.00099 14.3 5.3 130 190-342 102-245 (303) 13 1zpv_A ACT domain protein; str 28.9 25 0.001 14.2 2.3 63 186-250 18-80 (91) 14 2qrd_A SNF1-like protein kinas 26.2 28 0.0012 13.9 2.0 31 175-205 15-45 (137) 15 1ejb_A Lumazine synthase; anal 26.2 28 0.0012 13.9 2.4 38 181-218 29-66 (168) 16 2qdx_A Ferredoxin reductase; o 24.2 30 0.0013 13.7 2.4 29 184-214 221-249 (257) 17 2hfv_A Hypothetical protein RP 21.9 33 0.0014 13.4 2.1 53 188-240 36-88 (97) No 1 >1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A* 1fpy_A* 1lgr_A* 2lgs_A* 2gls_A Probab=100.00 E-value=0 Score=934.38 Aligned_cols=455 Identities=43% Similarity=0.745 Sum_probs=408.4 Q ss_pred CHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEHHHHHHHHHHCCCCCCCCCHHCCCC-CCCCEEEEEECCCCEECCCC Q ss_conf 98999999985798399999978998252378778783055884598456651002468-99888999641105877568 Q gi|254780185|r 4 KATSIIQKIAQEKVKFIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGWHS-KHPNLLLIPDIETMHMDPFY 82 (458) Q Consensus 4 ~~~~i~~~l~~~~I~~V~~~~~Dl~G~~R~k~ip~~~f~~~~~~~G~~fd~s~i~g~~~-~~~D~~l~PD~~T~~~~Pw~ 82 (458) ++++|+++|++++|+||+++|+|++|++|+|.||++.|.+.++.+|++||+|++.||.. +++|++++||++|++++||. T Consensus 1 s~e~v~~~l~~~~i~~V~~~~~Dl~G~~R~k~ip~~~~~~~~~~~G~~fdgssi~g~~~~~~sD~~l~PD~sT~~~~Pw~ 80 (468) T 1f52_A 1 SAEHVLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFFEEGKMFDGSSIGGWKGINESDMVLMPDASTAVIDPFF 80 (468) T ss_dssp CHHHHHHHHHHTTCCEEEEEEECTTSCEEEEEEEGGGCCHHHHHHCEEEEGGGSTTSCCSSCCEEEEEECGGGCEECSSC T ss_pred CHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEECCCC T ss_conf 97999999998898399999999999878999829997699985898656225257677998898999827840889868 Q ss_pred CCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCC---- Q ss_conf 9722799852014754485302555323556799873034522577313308997067777786547766676545---- Q gi|254780185|r 83 AQSTVAFICNVYDPITLQPYNRDPRYTAQKAIDYLQTTDIGDTLLLGITTEFFVFDNVHCTISPIKSGFALESTEF---- 158 (458) Q Consensus 83 ~~~~~~v~~d~~~~~~g~P~~~~PR~~Lk~~~~~l~~~~~G~~~~~g~E~EF~Lf~~~~~~~~p~~~~~~~~~~~~---- 158 (458) ++++++|+||++.+.++.|+..|||++|+++++++++.+++..+.+|+|+|||+|+.............+....+. T Consensus 81 ~~~~~~v~cd~~~~~~~~p~~~~PR~~l~~~~~~~~~~G~~~~~~~~~E~ef~l~~~~~~~~~~~~~~~~~~~~e~~~~~ 160 (468) T 1f52_A 81 ADSTLIIRCDILEPGTLQGYDRDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNS 160 (468) T ss_dssp SSCEEEEEEEEECTTTCCCCTTCHHHHHHHHHHHHHHHTSCSEEEEEEEEEEEEESEEEEEEETTEEEEEEECTTCGGGG T ss_pred CCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 98628999998636767887788558999999999875996423414556999631433467878874545762224577 Q ss_pred --CCCCCCCEEC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CHHHCCCCCCCCHHHHHHHHHHHHH Q ss_conf --7777775003-65545563552444689999999999860541122213356-2121036555668887769999999 Q gi|254780185|r 159 --LQNGNNKGYD-SHAKSSYTLPPQDKLHDMRSEIVSALNNIGVQITKYHNQIN-DAQHSFGLQSESLLHASDNLQKYKY 234 (458) Q Consensus 159 --~~~~~~~g~~-~~~~~~y~~~~~~~~~~~~~ei~~~l~~~Gi~ie~~h~E~g-pGQ~Ei~~~~~~~l~aAD~~~~~k~ 234 (458) ....++.++. ....++|++.+.+...++++++++.|+++||+|+++|+|+| +||+||++.|+++|+|||+++++|+ T Consensus 161 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~gi~ve~~~~E~~~~GQ~Ei~~~~~d~L~aAD~~~~~K~ 240 (468) T 1f52_A 161 STKYEGGNKGHRPGVKGGYFPVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKY 240 (468) T ss_dssp GCCCTTCCCCCCCCTTCCSSBCTTSSCCHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHH T ss_conf 87666788675104788712326642067799999999997398721101265678618870567755554679999999 Q ss_pred HHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCHHCCCCCHHHH Q ss_conf 99999874497544412101456860120111111467631221555657899999999999886410000066700144 Q gi|254780185|r 235 SVHQVANSYCKIATFMPKPIASHNGSGMYLNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGIIKHAKSLNALTNASTNSYK 314 (458) Q Consensus 235 ~ik~iA~~~G~~ATFmpKP~~~~~GsG~Hih~Sl~~~~~n~f~~~~~~~ls~~~~~fiaGil~h~~al~a~~~PtvNSYk 314 (458) +||+||++||++|||||||+.+.+|||||+|+|||++|+|+|+++++.+||.++++||||||+|+|+++||+|||+|||| T Consensus 241 ~vk~iA~~~Gl~ATFmpKP~~~~~GsG~H~H~Sl~~~g~n~f~~~~~~~lS~~~~~~iaGlL~h~~~l~a~~~PtvNSYk 320 (468) T 1f52_A 241 VVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYYIGGVIKHAKAINALANPTTNSYK 320 (468) T ss_dssp HHHHHHHHTTCEEECCSCSSTTSCCCCEEEEEEEEETTEETTBCSSGGGBCHHHHHHHHHHHHTHHHHHHHHSCSGGGGG T ss_pred HHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHC T ss_conf 99999996196468840126888887437999835899606689887772899999999999863766605558815641 Q ss_pred HHCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH-- Q ss_conf 318885212010113688764010257887654124404675321279999999999998788559998665578877-- Q gi|254780185|r 315 RLLTDSQSPTKLTYSTHNHSASCRIPYENKSDNKSIEIRFPDLSANPYLAPAAILMAGLDGIAKKIHPGKNIDELSLE-- 392 (458) Q Consensus 315 Rl~p~~~ap~~~~WG~~NR~a~iRip~~~~~~~~riE~R~~da~aNPYL~lAailaAgl~Gi~~~l~p~~~~~~~~~~-- 392 (458) ||+|++|||+++|||.+||+++||||..++++++|||+|++|++|||||++||+|+|||+||+++++|++|+.+++++ T Consensus 321 Rl~p~~~AP~~~~WG~~NR~~~iRip~~~~~~~~riE~R~~da~aNPYL~lAa~laagl~Gi~~~l~p~~p~~~~~~~~~ 400 (468) T 1f52_A 321 RLVPGYEAPVMLAYSARNRSASIRIPVVASPKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPGEPMDKNLYDLP 400 (468) T ss_dssp TSSSCSSCCCEEEEESSCTTEEEECCCCSCGGGCCEEECCCCTTSCHHHHHHHHHHHHHHHHHTTCCCCSCCCSCCSSSC T ss_pred CCCCCCCCCCCCEECCCCCCEEEEECCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCC T ss_conf 67898758863352222584207815578987615784379987698999999999999999837999986778814499 Q ss_pred --HHHCCCCCCCCHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC Q ss_conf --771320001798999999873989898413378899999999999999999659997899863579 Q gi|254780185|r 393 --EQNTIPRICISLRESLENLDKDREFLKVGNVFDDDQIDAFINLKMKEVLKLESSPSPVEFEMYCSI 458 (458) Q Consensus 393 --~~~~~~~LP~~L~eAl~~l~~d~~~~~~~~~lG~~~v~~~~~~K~~E~~~~~~~vt~wE~~~Y~~~ 458 (458) +...+++||+||.|||++|++|+++++..++||++||+.|+++||+||++|++.||+||+++||+| T Consensus 401 ~~~~~~~~~LP~sl~eAl~~l~~d~~~~~a~~~fg~~~v~~~~~~K~~E~~~~~~~vt~wE~~~Y~~~ 468 (468) T 1f52_A 401 PEEAKEIPQVAGSLEEALNALDLDREFLKAGGVFTDEAIDAYIALRREEDDRVRMTPHPVEFELYYSV 468 (468) T ss_dssp CSSTTCCCBCCSSHHHHHHHHHHTCHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHTTC T ss_pred HHHHHCHHCCCCCHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC T ss_conf 86761310161379999999973969888655156999999999999999999779999999740689 No 2 >2bvc_A Glutamine synthetase 1; ligase, transition state mimic; HET: P3S ADP; 2.1A {Mycobacterium tuberculosis} SCOP: d.15.9.1 d.128.1.1 PDB: 2wgs_A* 2whi_A* 1hto_A* 1htq_A* Probab=100.00 E-value=0 Score=898.94 Aligned_cols=456 Identities=37% Similarity=0.641 Sum_probs=401.4 Q ss_pred CCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEHHHHHHHHHHCCCCCCCCCHHCCCC-CCCCEEEEEECCCCEECCC Q ss_conf 798999999985798399999978998252378778783055884598456651002468-9988899964110587756 Q gi|254780185|r 3 DKATSIIQKIAQEKVKFIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGWHS-KHPNLLLIPDIETMHMDPF 81 (458) Q Consensus 3 ~~~~~i~~~l~~~~I~~V~~~~~Dl~G~~R~k~ip~~~f~~~~~~~G~~fd~s~i~g~~~-~~~D~~l~PD~~T~~~~Pw 81 (458) ++.++|+++|++++|+||+++|+|++|++|||.||++.|.+.++.+|++||++++.||.. +++|++++||++|++++|| T Consensus 12 ~t~~ei~~~i~~~~I~~v~~~~~Dl~G~~Rgk~ip~~~~~~~v~~~G~~fdgssi~g~~~~~~sD~~l~PD~~T~~~~PW 91 (486) T 2bvc_A 12 KTPDDVFKLAKDEKVEYVDVRFCDLPGIMQHFTIPASAFDKSVFDDGLAFDGSSIRGFQSIHESDMLLLPDPETARIDPF 91 (486) T ss_dssp CCHHHHHHHHHHTTCSEEEEEEECSSSCEEEEEEEGGGCSHHHHHTCEEEETTSSTTSCCGGGCEEEEEECGGGCEECSS T ss_pred CCHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEEEHHHHHHHHHHCCCEEECCCCCCCCCCCCCCEEEEECCCCEEECCC T ss_conf 89999999998889819999999999867799998999769999789905664803466777777899983352188874 Q ss_pred CCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCC------- Q ss_conf 8972279985201475448530255532355679987303452257731330899706777778654776667------- Q gi|254780185|r 82 YAQSTVAFICNVYDPITLQPYNRDPRYTAQKAIDYLQTTDIGDTLLLGITTEFFVFDNVHCTISPIKSGFALE------- 154 (458) Q Consensus 82 ~~~~~~~v~~d~~~~~~g~P~~~~PR~~Lk~~~~~l~~~~~G~~~~~g~E~EF~Lf~~~~~~~~p~~~~~~~~------- 154 (458) .+++++.|+|+++++.+|+|++.|||++||++++++++.++...+.+|+|+|||+++.............+.. T Consensus 92 ~~~~~~~v~~~~~~~~~g~p~~~~pR~vlk~~~~~~~~~G~~~~~~~g~E~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (486) T 2bvc_A 92 RAAKTLNINFFVHDPFTLEPYSRDPRNIARKAENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWN 171 (486) T ss_dssp CSSCEEEEEEEEECTTTCCBCTTCHHHHHHHHHHHHHHHSSCSEEEEEEEECEEEESEEEEEECSSCEEEEEECTTBGGG T ss_pred CCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCHHHCCC T ss_conf 79960899999503898980888940999999999998097633310563079986213444445677677672220346 Q ss_pred --CCCCCCCCCCCEECCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-HHHCCCCCCCCHHHHHHHHH Q ss_conf --65457777775003655-455635524446899999999998605411222133562-12103655566888776999 Q gi|254780185|r 155 --STEFLQNGNNKGYDSHA-KSSYTLPPQDKLHDMRSEIVSALNNIGVQITKYHNQIND-AQHSFGLQSESLLHASDNLQ 230 (458) Q Consensus 155 --~~~~~~~~~~~g~~~~~-~~~y~~~~~~~~~~~~~ei~~~l~~~Gi~ie~~h~E~gp-GQ~Ei~~~~~~~l~aAD~~~ 230 (458) .........+.+|.... .++|++.+.+...++++++++.|+++||++++.|+|.++ ||+||++.|+++|+|||+++ T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~e~~~~gQ~Ei~~~~~~~l~aAD~~~ 251 (486) T 2bvc_A 172 TGAATEADGSPNRGYKVRHKGGYFPVAPNDQYVDLRDKMLTNLINSGFILEKGHHEVGSGGQAEINYQFNSLLHAADDMQ 251 (486) T ss_dssp TTCSBCTTSCBCCCCCBCTTCCSCBCTTTSCCHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEECCCCCHHHHHHHHHH T ss_conf 78755678888878665656775655630358999999999999769973675424446743787644242878876999 Q ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHCCCCCCC-EECCCCCCCCHHHHHHHHHHHHHHHHCCHHCCCC Q ss_conf 999999999874497544412101456860120111111467631-2215556578999999999998864100000667 Q gi|254780185|r 231 KYKYSVHQVANSYCKIATFMPKPIASHNGSGMYLNMSIHKGEKAI-FTGNQHDRVSLKGLYYLGGIIKHAKSLNALTNAS 309 (458) Q Consensus 231 ~~k~~ik~iA~~~G~~ATFmpKP~~~~~GsG~Hih~Sl~~~~~n~-f~~~~~~~ls~~~~~fiaGil~h~~al~a~~~Pt 309 (458) ++|++||+||++||+.|||||||+.+.+|||||+|+|||++++|+ ++++++.+||+.+++||||||+|+|+++||+||| T Consensus 252 ~~r~iik~vA~~~G~~ATFmpKP~~~~~GsG~H~H~Sl~~~~~n~~~~~~~~~~lS~~~~~fiaGlL~h~~a~~al~~Pt 331 (486) T 2bvc_A 252 LYKYIIKNTAWQNGKTVTFMPKPLFGDNGSGMHCHQSLWKDGAPLMYDETGYAGLSDTARHYIGGLLHHAPSLLAFTNPT 331 (486) T ss_dssp HHHHHHHHHHHHTTCEEECCSCSSTTSCCCCEEEEEEEEETTEECSBCTTSGGGBCHHHHHHHHHHHHHHHHHHHHHSCS T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHEEECCC T ss_conf 99999998777419579996314778778774189887418975111247866765899999999985365440520677 Q ss_pred CHHHHHHCCCCCCCEEEEECCCCCCCEEECCCCC-CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 0014431888521201011368876401025788-765412440467532127999999999999878855999866557 Q gi|254780185|r 310 TNSYKRLLTDSQSPTKLTYSTHNHSASCRIPYEN-KSDNKSIEIRFPDLSANPYLAPAAILMAGLDGIAKKIHPGKNIDE 388 (458) Q Consensus 310 vNSYkRl~p~~~ap~~~~WG~~NR~a~iRip~~~-~~~~~riE~R~~da~aNPYL~lAailaAgl~Gi~~~l~p~~~~~~ 388 (458) |||||||+|++|||++++||++||+++||||..+ +++++|||+|++|++|||||++||||+||++||+++++||+|+.+ T Consensus 332 vNSYkRl~p~~~ap~~~~WG~~nR~~~iRv~~~~~~~~~~riE~R~~da~aNPYL~lAailaAgl~Gi~~~l~p~~p~~~ 411 (486) T 2bvc_A 332 VNSYKRLVPGYEAPINLVYSQRNRSACVRIPITGSNPKAKRLEFRSPDSSGNPYLAFSAMLMAGLDGIKNKIEPQAPVDK 411 (486) T ss_dssp TTHHHHSSTTSSSCSBCCEEETCTTSSEEECCCCSCTTSCCEEECSCCSSSCHHHHHHHHHHHHHHHHHTTCCCCCCCCS T ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 65235789998896545405677631013677789876605885489877698999999999999999828999996778 Q ss_pred CCHH----HHHCCCCCCCCHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHH-HHHHHHHCCCCHHHHHHHCCC Q ss_conf 8877----771320001798999999873989898413378899999999999-999999659997899863579 Q gi|254780185|r 389 LSLE----EQNTIPRICISLRESLENLDKDREFLKVGNVFDDDQIDAFINLKM-KEVLKLESSPSPVEFEMYCSI 458 (458) Q Consensus 389 ~~~~----~~~~~~~LP~~L~eAl~~l~~d~~~~~~~~~lG~~~v~~~~~~K~-~E~~~~~~~vt~wE~~~Y~~~ 458 (458) +.++ +..++++||+||+|||++|++|+++++.+++||++|++.|+++|| .||++|++.||+||+++|||| T Consensus 412 d~y~~~~~~~~~~~~LP~sl~eAl~ale~d~~~~~~~~~lg~~~v~~y~~~Kr~~E~~~~~~~vt~wE~~~Y~~~ 486 (486) T 2bvc_A 412 DLYELPPEEAASIPQTPTQLSDVIDRLEADHEYLTEGGVFTNDLIETWISFKRENEIEPVNIRPHPYEFALYYDV 486 (486) T ss_dssp CGGGCCHHHHHTSCBCCSSHHHHHHHHHHCCHHHHGGGSSCHHHHHHHHHHHHHHTHHHHHTSCCHHHHHHHTTC T ss_pred CHHHCCHHHHCCHHHCCCCHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCC T ss_conf 713389757648211411799999999729798886674679999999999999999999679999999614899 No 3 >2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus} Probab=100.00 E-value=0 Score=847.39 Aligned_cols=416 Identities=19% Similarity=0.250 Sum_probs=370.5 Q ss_pred CHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEHHHHHHHHHHCCCCCCCCCHHCCCC-CCCCEEEEEECCCCEECCCC Q ss_conf 98999999985798399999978998252378778783055884598456651002468-99888999641105877568 Q gi|254780185|r 4 KATSIIQKIAQEKVKFIDLRFTDLQGKFRHISMNVSLFNENTLLNGITFDSSSIDGWHS-KHPNLLLIPDIETMHMDPFY 82 (458) Q Consensus 4 ~~~~i~~~l~~~~I~~V~~~~~Dl~G~~R~k~ip~~~f~~~~~~~G~~fd~s~i~g~~~-~~~D~~l~PD~~T~~~~Pw~ 82 (458) ++++|+++|++++|+||+++|+|++|++|||.||++.|.+.+..+|+.||++++.|+.. +++|++++||++|+.++||+ T Consensus 1 s~e~v~~~l~~~~I~~vr~~~~Dl~G~~Rgk~vp~~~~~~~~~~~g~~~dgs~~~g~~~~~~sD~~l~PD~~T~~~~~~~ 80 (421) T 2j9i_A 1 SAEHVLTMLNEHAAAFVRFEATDAAGASRSKSIPAQFFEKVIHARGYLEDGEVNAGAAGAAASDIVLMPELSTAAVAAAA 80 (421) T ss_dssp CHHHHHHHHHHTTCSEEEEEEECSSSCEEEEEEEGGGCCTTHHHHCEEECGGGSTTTCCTTCCCEEEEECSSCCEECTTS T ss_pred CHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC T ss_conf 98999999997899399999898999866899809999999756987157764267666888888999888976433334 Q ss_pred CCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 97227998520147544853025553235567998730345225773133089970677777865477666765457777 Q gi|254780185|r 83 AQSTVAFICNVYDPITLQPYNRDPRYTAQKAIDYLQTTDIGDTLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNG 162 (458) Q Consensus 83 ~~~~~~v~~d~~~~~~g~P~~~~PR~~Lk~~~~~l~~~~~G~~~~~g~E~EF~Lf~~~~~~~~p~~~~~~~~~~~~~~~~ 162 (458) ...+++|+|+ +|+|++.|||++||++++++++.+++..+.+|+|+|||+|+....... T Consensus 81 ~~~~~~v~~~-----dG~p~~~~PR~iLkr~~~~l~~~G~~~~~~~~~E~Ef~l~~~~~~~~~----------------- 138 (421) T 2j9i_A 81 AAATAAVICD-----GGAAAAASPRYIARAALAQLQAAGAAAGLLSAFIADFCIFGVPEVINS----------------- 138 (421) T ss_dssp SSSEEEEEEE-----EESSCSCCHHHHHHHHHHHHHHTTSCSEECCEECCCCEEESCCEEEEC----------------- T ss_pred CCCCEEEEEC-----CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCCCCC----------------- T ss_conf 4432179968-----999768698999999999875329873787504789886488866667----------------- Q ss_pred CCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCC-CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 775003655455635524446899999999998605411222133562121036555-6688877699999999999987 Q gi|254780185|r 163 NNKGYDSHAKSSYTLPPQDKLHDMRSEIVSALNNIGVQITKYHNQINDAQHSFGLQS-ESLLHASDNLQKYKYSVHQVAN 241 (458) Q Consensus 163 ~~~g~~~~~~~~y~~~~~~~~~~~~~ei~~~l~~~Gi~ie~~h~E~gpGQ~Ei~~~~-~~~l~aAD~~~~~k~~ik~iA~ 241 (458) ..++|...+.+....+ .+++..++.+||+++++|+|+||||||+++.+ .++|+|||+++++|++||+||+ T Consensus 139 --------~~~~~~~~~~~~~~~~-~~~~~~l~~~gi~v~~~~~E~~pGQ~Ei~~~~~~~~l~aAD~~~~~K~~ik~iA~ 209 (421) T 2j9i_A 139 --------KTISFPASTTAAAADQ-PQEAAAGGAAGAAAGAAGGAAAAGAAEICFLPEAAGAAAADNAFTLRTGLQEVAR 209 (421) T ss_dssp --------SSCEEEECCCTTCTTG-GGSCCTTCCCSCCCBTTBCCCCCSSCCTTTTTTTCCSCTTTHHHHHHHHHHHHHH T ss_pred --------CCCCCCCCCCCCHHHH-HHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf --------7877777753100128-9999988635788611356565543022057522133401089999999999999 Q ss_pred HCCCEEEEEEEECCCCCCCHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHCCCCC Q ss_conf 44975444121014568601201111114676312215556578999999999998864100000667001443188852 Q gi|254780185|r 242 SYCKIATFMPKPIASHNGSGMYLNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGIIKHAKSLNALTNASTNSYKRLLTDSQ 321 (458) Q Consensus 242 ~~G~~ATFmpKP~~~~~GsG~Hih~Sl~~~~~n~f~~~~~~~ls~~~~~fiaGil~h~~al~a~~~PtvNSYkRl~p~~~ 321 (458) +||+.|||||||+.+.+|||||+|+|||++|+|+|.++++.+||+.++|||||||+|+++++++++||+|||||+.|++| T Consensus 210 ~hG~~atFmpkP~~~~~Gsg~H~h~Sl~~~g~n~f~~~~~~~ls~~~~~~iaGll~~~~~~~~~~~p~~nsy~r~~~~~~ 289 (421) T 2j9i_A 210 RYNAIASAAAAAAAAAAGAGSHSIWDVGAAGTNAFAGASGARATLTGAKWLAGLLAAAAAAAAAAAAAAAAAAAAAAGAA 289 (421) T ss_dssp TTTCEEECCTTSSTTSCCCBCCEEECEEETTEESSCSSSGGGCCHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHTSSSTT T ss_pred HCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 85996433321111124234069984489997265799976533999986388762123221111111111111111111 Q ss_pred CCEEEEECCCCCCCEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCC Q ss_conf 12010113688764010257887654124404675321279999999999998788559998665578877771320001 Q gi|254780185|r 322 SPTKLTYSTHNHSASCRIPYENKSDNKSIEIRFPDLSANPYLAPAAILMAGLDGIAKKIHPGKNIDELSLEEQNTIPRIC 401 (458) Q Consensus 322 ap~~~~WG~~NR~a~iRip~~~~~~~~riE~R~~da~aNPYL~lAailaAgl~Gi~~~l~p~~~~~~~~~~~~~~~~~LP 401 (458) ||+++|||.+||+++||||..+.++++|||+|++|++|||||++||+|+|||+||+++++|++|..++.+.... ++|| T Consensus 290 ap~~~~WG~~nR~~~iRv~~~~~~~~~riE~R~~d~~aNPYL~lAa~l~Agl~Gi~~~~~~~~~~~~~~~~~~~--~~LP 367 (421) T 2j9i_A 290 AAAATAWGAAAAACALNIAAAAAAKGAQIENKAGAAAANPYLVLAATVAAGLDGIQSAGAAAGAAAADAAAAAP--SEIP 367 (421) T ss_dssp CCCEEEEESSCTTEEEEEECCSSGGGCEEEECSCBTTSCHHHHHHHHHHHHHHHHHHTCCCCSCBCSSSSCSSC--CCCC T ss_pred CCCCEEECCCCCEEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH--HHCC T ss_conf 10130424766617999840357877568834899887989999999999999987089998976777455673--2318 Q ss_pred CCHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC Q ss_conf 79899999987398989841337889999999999999999965999789986357 Q gi|254780185|r 402 ISLRESLENLDKDREFLKVGNVFDDDQIDAFINLKMKEVLKLESSPSPVEFEMYCS 457 (458) Q Consensus 402 ~~L~eAl~~l~~d~~~~~~~~~lG~~~v~~~~~~K~~E~~~~~~~vt~wE~~~Y~~ 457 (458) +||+|||++|++|+++ ++++||++|++.|+++||+||++| +|+||+++||+ T Consensus 368 ~tL~eAl~~l~~d~~~--l~~~lg~~~~~~~~~~K~~E~~~~---~t~~e~~ey~~ 418 (421) T 2j9i_A 368 GKMEDALAALEQDAEC--LKAGLGEAFIRAAVAAAKYELENE---ETDAEGNKFLE 418 (421) T ss_dssp SSHHHHHHHHTTCCSS--SSCSCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHH T ss_pred CCHHHHHHHHHHCHHH--HHHHCCHHHHHHHHHHHHHHHHHH---CCCHHHHHHHH T ss_conf 8999999999858599--998768999999999999999996---58257999988 No 4 >3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae} Probab=100.00 E-value=0 Score=592.55 Aligned_cols=353 Identities=19% Similarity=0.234 Sum_probs=278.7 Q ss_pred CHHHHHHHHHHC-CCCE-EEEEEECCCCCEEEEEEEHHHHHHHHH-HCCCCCCCCCHHCCCCCCCCEEEEEECCCCEECC Q ss_conf 989999999857-9839-999997899825237877878305588-4598456651002468998889996411058775 Q gi|254780185|r 4 KATSIIQKIAQE-KVKF-IDLRFTDLQGKFRHISMNVSLFNENTL-LNGITFDSSSIDGWHSKHPNLLLIPDIETMHMDP 80 (458) Q Consensus 4 ~~~~i~~~l~~~-~I~~-V~~~~~Dl~G~~R~k~ip~~~f~~~~~-~~G~~fd~s~i~g~~~~~~D~~l~PD~~T~~~~P 80 (458) +..-+.++++-+ ..|+ +..+|+|.+|.+|||+........+.- ..-++|||||+.++...++|++|+|| |++++| T Consensus 8 ~~~~~~~~~~~~~~~k~~~eYiWid~~~~~RsK~k~~~~~~~~~~~~p~w~FDGSSt~qa~~~~SD~~L~P~--~~~~dP 85 (370) T 3fky_A 8 KTQILQKYLELDQRGRIIAEYVWIDGTGNLRSKGRTLKKRITSIDQLPEWNFDGSSTNQAPGHDSDIYLKPV--AYYPDP 85 (370) T ss_dssp -------------CCCEEEEEEEECSSSCEEEEEEEESSCCCSGGGSCCEEECGGGTTSSCCCC--EEEEEE--EEEECT T ss_pred HHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCEECCCCCCCHHHCCCEECCCCCCCCEECCCCEEEEECC--EEECCC T ss_conf 578999985788678079999998898888765167357889976698352257766860468853999617--140589 Q ss_pred CCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 68972279985201475448530255532355679987303452257731330899706777778654776667654577 Q gi|254780185|r 81 FYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAIDYLQTTDIGDTLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQ 160 (458) Q Consensus 81 w~~~~~~~v~~d~~~~~~g~P~~~~PR~~Lk~~~~~l~~~~~G~~~~~g~E~EF~Lf~~~~~~~~p~~~~~~~~~~~~~~ 160 (458) |...+++.|+||++++ +|+|++.|||++|+++++++++. | +++|+|+|||+|+.......... T Consensus 86 f~~~~t~lvlCdv~~~-DG~P~~~~pR~~Lkk~~~~~~~~--g--~~~g~E~Ef~~f~~~~~~~~~~~------------ 148 (370) T 3fky_A 86 FRRGDNIVVLAACYNN-DGTPNKFNHRHEAAKLFAAHKDE--E--IWFGLEQEYTLFDMYDDVYGWPK------------ 148 (370) T ss_dssp TTCTTCEEEEEEEECT-TSSBCTTCCHHHHHHHHHHTGGG--C--CEEEEEEEEEEECTTSSBTTCCT------------ T ss_pred CCCCCCEEEEEEEECC-CCCCCCCCCHHHHHHHHHHHHHC--C--CEEEEEEEEEEEEECCCCCCCCC------------ T ss_conf 9899988999999889-99998878699999999888756--8--47812104899970367556877------------ Q ss_pred CCCCCEECCCCCCCCCCCHHH--HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 777750036554556355244--468999999999986054112221335621210365556688877699999999999 Q gi|254780185|r 161 NGNNKGYDSHAKSSYTLPPQD--KLHDMRSEIVSALNNIGVQITKYHNQINDAQHSFGLQSESLLHASDNLQKYKYSVHQ 238 (458) Q Consensus 161 ~~~~~g~~~~~~~~y~~~~~~--~~~~~~~ei~~~l~~~Gi~ie~~h~E~gpGQ~Ei~~~~~~~l~aAD~~~~~k~~ik~ 238 (458) .++......+|.....+ ...++++++++.|..+||+++++|+|+|||||||++.|.++|+|||+++++|++||+ T Consensus 149 ----~~~~~~~g~y~~~~~~~~~~~~d~~~~~~~~l~~~gi~ie~~~~E~~pGQ~Ei~~~~~~~l~aAD~~~~~K~ivk~ 224 (370) T 3fky_A 149 ----GGYPAPQGPYYCGVGAGKVYARDMIEAHYRACLYAGLEISGINAEVMPSQWEFQVGPCTGIDMGDQLWMARYFLHR 224 (370) T ss_dssp ----TSBCSCSSSCTTCCSTTTCSCHHHHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETHHHHHHHHHHHHHHHH T ss_pred ----CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCHHHCCHHHHHHHHHHHH T ss_conf ----8878888875656787502468999999999986697068874366788468720213022112689999999999 Q ss_pred HHHHCCCEEEEEEEECCC-CCCCHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHC Q ss_conf 987449754441210145-6860120111111467631221555657899999999999886410000066700144318 Q gi|254780185|r 239 VANSYCKIATFMPKPIAS-HNGSGMYLNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGIIKHAKSLNALTNASTNSYKRLL 317 (458) Q Consensus 239 iA~~~G~~ATFmpKP~~~-~~GsG~Hih~Sl~~~~~n~f~~~~~~~ls~~~~~fiaGil~h~~al~a~~~PtvNSYkRl~ 317 (458) ||.+||++|||||||+.+ .+|||||+|+|+|+.++ +.+.+.....+.++++.|+. ++++||+||||||+ T Consensus 225 iA~~~G~~aTFmPKP~~gd~~GsG~H~h~S~~~~~~-------~~g~~~~~~~~~~~~~~~~~---~~~~~~~nsy~Rl~ 294 (370) T 3fky_A 225 VAEEFGIKISFHPKPLKGDWNGAGCHANVSTKEMRQ-------PGGTKYIEQAIEKLSKRHAE---HIKLYGSDNDMRLT 294 (370) T ss_dssp HHHTTTCEEECCSCSSSSSSCCCBEEEEEECHHHHS-------SSTHHHHHHHHHHHHHTHHH---HHHSSCTTGGGC-- T ss_pred HHHHHCCCEEEECCCCCCCCCCCCEEEEECCCCCCC-------CCCHHHHHHHHHHHHHHHHH---HHCCCCCCCHHHCC T ss_conf 999969818983344678767885046543343668-------88579999999988888887---63336753022214 Q ss_pred CCCCCCEEE--EECCCCCCCEEECCCCC-CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 885212010--11368876401025788-76541244046753212799999999999987885599986655788 Q gi|254780185|r 318 TDSQSPTKL--TYSTHNHSASCRIPYEN-KSDNKSIEIRFPDLSANPYLAPAAILMAGLDGIAKKIHPGKNIDELS 390 (458) Q Consensus 318 p~~~ap~~~--~WG~~NR~a~iRip~~~-~~~~~riE~R~~da~aNPYL~lAailaAgl~Gi~~~l~p~~~~~~~~ 390 (458) |++|||+.. |||.+||+|+||||... +++++|||+|+||++|||||++||+|+|||+||+++ +|++|++.++ T Consensus 295 ~~~eap~~~~~swG~~NR~a~iRIP~~~~~~~~~r~E~R~pd~~aNPYl~~aa~l~agl~Gi~~~-~p~~p~~~~~ 369 (370) T 3fky_A 295 GRHETASMTAFSSGVANRGSSIRIPRSVAKEGYGYFEDRRPASNIDPYLVTGIMCETVCGAIDNA-DMTKEFERES 369 (370) T ss_dssp ------CCSCCCEEESCTTSSEEECHHHHHHTCCCEEECCCBTTCCHHHHHHHHHHHHHCCBTTB-CTTTCCC--- T ss_pred CCCCCCCCCCCEECCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCC-CCCCCCCCCC T ss_conf 77647664123554678746799687778888618997577778688999999999998787548-9998567778 No 5 >2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural genomics, structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A Probab=100.00 E-value=0 Score=564.07 Aligned_cols=325 Identities=20% Similarity=0.246 Sum_probs=262.7 Q ss_pred EEEEEEECCCCC-EEEEEEEHHHHHHHHHHC--CCCCCCCCHHCCCCCCCCEEEEEECCCCEECCCCCCCEEEEEEEECC Q ss_conf 999999789982-523787787830558845--98456651002468998889996411058775689722799852014 Q gi|254780185|r 19 FIDLRFTDLQGK-FRHISMNVSLFNENTLLN--GITFDSSSIDGWHSKHPNLLLIPDIETMHMDPFYAQSTVAFICNVYD 95 (458) Q Consensus 19 ~V~~~~~Dl~G~-~R~k~ip~~~f~~~~~~~--G~~fd~s~i~g~~~~~~D~~l~PD~~T~~~~Pw~~~~~~~v~~d~~~ 95 (458) .+..+|+|..|. +|+|+--...... .+.+ -++|||||+.++...++||+|+|| |++++||...+++.|+||+++ T Consensus 46 ~~eyiwidg~~~~~rsk~~~~~~~~~-~~~~~p~W~fDGSS~~~a~~~~SDmiL~Pd--t~~~dPf~~~~t~~ViCdv~~ 122 (384) T 2ojw_A 46 QAMYIWIDGTGEGLRCKTRTLDSEPK-CVEELPEWNFDGSSTLQSEGSNSDMYLVPA--AMFRDPFRKDPNKLVLCEVFK 122 (384) T ss_dssp EEEEEEECTTSSCEEEEEEEESSCCS-SGGGSCCEEEEGGGTTSSBTTBCEEEEEEE--EEEECTTTCTTCEEEEEEEEC T ss_pred EEEEEEECCCCCCCCCCCEEECCCCC-CHHHCCCCCCCCCCCCCCCCCCCEEEEECC--EEEECCCCCCCCEEEEEEEEC T ss_conf 99999854899886667357347889-976788847677756898677741999748--896788889998899999788 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC Q ss_conf 75448530255532355679987303452257731330899706777778654776667654577777750036554556 Q gi|254780185|r 96 PITLQPYNRDPRYTAQKAIDYLQTTDIGDTLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNGNNKGYDSHAKSSY 175 (458) Q Consensus 96 ~~~g~P~~~~PR~~Lk~~~~~l~~~~~G~~~~~g~E~EF~Lf~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~y 175 (458) + +|+|++.|||++||++++++++ .|+.+.+++|+|||+++...... +. .+++....++| T Consensus 123 ~-dG~P~~~~pR~~Lk~~~~~~~~--~g~~~~~e~E~ef~~~~~~~~g~-------~~-----------~~~p~~~g~y~ 181 (384) T 2ojw_A 123 Y-NRRPAETNLRHTCKRIMDMVSN--QHPWFGMEQEYTLMGTDGHPFGW-------PS-----------NGFPGPQGPYY 181 (384) T ss_dssp T-TSCBCTTCCHHHHHHHHHHTGG--GCCEEEEEEEEEEEC-CCSBTTC-------CT-----------TSCCSCSSSCT T ss_pred C-CCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEEEEEEEECCCCCCCC-------CC-----------CCCCCCCCCCC T ss_conf 9-9898830089999999998873--58777231489997246776777-------66-----------78988888756 Q ss_pred CCCHHHH--HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEE Q ss_conf 3552444--68999999999986054112221335621210365556688877699999999999987449754441210 Q gi|254780185|r 176 TLPPQDK--LHDMRSEIVSALNNIGVQITKYHNQINDAQHSFGLQSESLLHASDNLQKYKYSVHQVANSYCKIATFMPKP 253 (458) Q Consensus 176 ~~~~~~~--~~~~~~ei~~~l~~~Gi~ie~~h~E~gpGQ~Ei~~~~~~~l~aAD~~~~~k~~ik~iA~~~G~~ATFmpKP 253 (458) ...+.+. .+++++++++.|+.+||+|+++|+|+||||+||++.|+++|+|||+++++|++||+||.+||++||||||| T Consensus 182 ~~~~~d~~~~rdi~~e~~~~l~~~Gi~ie~~~~EvapGQ~Ei~~~~~~~l~aAD~~~~~K~ivk~iA~~~G~~ATFMPKP 261 (384) T 2ojw_A 182 CGVGADRAYGRDIVEAHYRACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDPKP 261 (384) T ss_dssp TCCSTTTCCCHHHHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHTCEEECCSCS T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCC T ss_conf 56776202312999999999975597420210333477457600431454310289999999999999819867642557 Q ss_pred CCC-CCCCHHHHHHHHCC--CCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHCCCCCCCEE--EEE Q ss_conf 145-68601201111114--6763122155565789999999999988641000006670014431888521201--011 Q gi|254780185|r 254 IAS-HNGSGMYLNMSIHK--GEKAIFTGNQHDRVSLKGLYYLGGIIKHAKSLNALTNASTNSYKRLLTDSQSPTK--LTY 328 (458) Q Consensus 254 ~~~-~~GsG~Hih~Sl~~--~~~n~f~~~~~~~ls~~~~~fiaGil~h~~al~a~~~PtvNSYkRl~p~~~ap~~--~~W 328 (458) +.+ .+|||||+|+|+++ ++++++.. ++...+++++.+.|+.+++ .+|++||||||+|+++||+. .+| T Consensus 262 ~~Gd~~GsG~H~h~sl~~~~~~~~~~~~------~~~~~~~~~~~~~~i~a~~--~~~~vnsykRL~~~~eap~~~~~sw 333 (384) T 2ojw_A 262 IPGNWNGAGCHTNFSTKAMREENGLKYI------EEAIEKLSKRHQYHIRAYD--PKGGLDNARRLTGFHETSNINDFSA 333 (384) T ss_dssp SCSSSCCCBEEEEEECHHHHSTTTHHHH------HHHHHHHHTCHHHHHHHSS--TTTTTTGGGTCC-----CCTTCCCE T ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCHH------HHHHHHHHHHHHHHHHHHC--CCCCHHHHHHHCCCCCCCCCCCEEE T ss_conf 8788788840587524334577762003------5778888999999999761--5775334664089875866232064 Q ss_pred CCCCCCCEEECCCC-CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 36887640102578-876541244046753212799999999999987 Q gi|254780185|r 329 STHNHSASCRIPYE-NKSDNKSIEIRFPDLSANPYLAPAAILMAGLDG 375 (458) Q Consensus 329 G~~NR~a~iRip~~-~~~~~~riE~R~~da~aNPYL~lAailaAgl~G 375 (458) |.+||+|+||||.. ++++++|||+|+||++|||||++||+|+|++.+ T Consensus 334 G~~NRsa~IRIP~~~~~~~~~riE~R~pda~aNPYLa~Aail~A~ll~ 381 (384) T 2ojw_A 334 GVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCLLN 381 (384) T ss_dssp EETCTTSSEEECHHHHHHTCSCEEECCCBTTCCHHHHHHHHHHHHTSC T ss_pred CCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCC T ss_conf 078887768968757898861899688778758999999999997378 No 6 >2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A* Probab=100.00 E-value=0 Score=558.27 Aligned_cols=344 Identities=17% Similarity=0.224 Sum_probs=268.6 Q ss_pred CCHHHHHHHHHHCCCCEE--EEEEECCCCC-EEEEEEEHHHHHHHH-HHCCCCCCCCCHHCCCCCCCCEEEEEECCCCEE Q ss_conf 798999999985798399--9999789982-523787787830558-845984566510024689988899964110587 Q gi|254780185|r 3 DKATSIIQKIAQEKVKFI--DLRFTDLQGK-FRHISMNVSLFNENT-LLNGITFDSSSIDGWHSKHPNLLLIPDIETMHM 78 (458) Q Consensus 3 ~~~~~i~~~l~~~~I~~V--~~~~~Dl~G~-~R~k~ip~~~f~~~~-~~~G~~fd~s~i~g~~~~~~D~~l~PD~~T~~~ 78 (458) .+-++|++.......+.| ..+|+|..|. +|||+--.......+ -...++|||||+......++|++|+|| +.+. T Consensus 2 ~~~~~~~~~~~~~~~~~~~~eyiwiDg~~~~lRsK~kv~~~~~~~~~~~p~w~fDGSStg~a~~~~SD~iL~Pd--~~~~ 79 (356) T 2d3a_A 2 ACLTDLVNLNLSDTTEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQ--AIFK 79 (356) T ss_dssp -CHHHHHTCCGGGTCSCEEEEEEEECTTSSCEEEEEEEESSCCCCGGGSCCEEEEGGGTTSSCSSSCEEEEEEE--EEEE T ss_pred CCHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCEEECCCCCCHHHCCCCCCCCCCCCCCCCCCCEEEEEEE--EEEE T ss_conf 67789986018886677999999956899986431269466889976798614276512683467671999841--8986 Q ss_pred CCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCC Q ss_conf 75689722799852014754485302555323556799873034522577313308997067777786547766676545 Q gi|254780185|r 79 DPFYAQSTVAFICNVYDPITLQPYNRDPRYTAQKAIDYLQTTDIGDTLLLGITTEFFVFDNVHCTISPIKSGFALESTEF 158 (458) Q Consensus 79 ~Pw~~~~~~~v~~d~~~~~~g~P~~~~PR~~Lk~~~~~l~~~~~G~~~~~g~E~EF~Lf~~~~~~~~p~~~~~~~~~~~~ 158 (458) +||+.+++..|+||++++ +|+|++.|||++||+++++++. .|+++++|+|+|||||++...... +..... T Consensus 80 dPf~~~~t~~Vlcdv~~~-dG~P~~~~PR~iLk~~~~~~~~--~g~~~~~G~E~EFfl~~~~~~~~~----~~~~~~--- 149 (356) T 2d3a_A 80 DPFRRGNNILVMCDCYTP-AGEPIPTNKRYSAAKIFSSPEV--AAEEPWYGIEQEYTLLQKDTNWPL----GWPIGG--- 149 (356) T ss_dssp CTTTCTTCEEEEEEEECT-TSCBCTTCCHHHHHHHHHSHHH--HHHCCEEEEEEEEEEEETTTCCBT----TSCTTS--- T ss_pred CCCCCCCCEEEEEEEECC-CCCCCCCCCCHHHHHHHHHHHH--CCCCEEECCCEEEEEEECCCCCCC----CCCCCC--- T ss_conf 789899988999999859-9989988983489999999876--697178615248999722567788----765788--- Q ss_pred CCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 77777750036554556355244468999999999986054112221335621210365556688877699999999999 Q gi|254780185|r 159 LQNGNNKGYDSHAKSSYTLPPQDKLHDMRSEIVSALNNIGVQITKYHNQINDAQHSFGLQSESLLHASDNLQKYKYSVHQ 238 (458) Q Consensus 159 ~~~~~~~g~~~~~~~~y~~~~~~~~~~~~~ei~~~l~~~Gi~ie~~h~E~gpGQ~Ei~~~~~~~l~aAD~~~~~k~~ik~ 238 (458) ...+.....++...+.+..+++++++++.|+.+||+|+++|+|+|||||||++.|+++|+|||+++++|++||+ T Consensus 150 ------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~i~~~h~Ev~pgQ~Ei~~~~~~~l~aAD~~~~~k~~vk~ 223 (356) T 2d3a_A 150 ------FPGPQGPYYCGIGAEKSFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILER 223 (356) T ss_dssp ------BCSCSSSCTTCCSTTTCCCHHHHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETHHHHHHHHHHHHHHHH T ss_pred ------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH T ss_conf ------88888877677664045679999999999875585400533466587189996124266777999999999999 Q ss_pred HHHHCCCEEEEEEEECCCC-CCCHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHC Q ss_conf 9874497544412101456-860120111111467631221555657899999999999886410000066700144318 Q gi|254780185|r 239 VANSYCKIATFMPKPIASH-NGSGMYLNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGIIKHAKSLNALTNASTNSYKRLL 317 (458) Q Consensus 239 iA~~~G~~ATFmpKP~~~~-~GsG~Hih~Sl~~~~~n~f~~~~~~~ls~~~~~fiaGil~h~~al~a~~~PtvNSYkRl~ 317 (458) ||++||+.|||||||+.+. +|||||+|.|+++++++.+. +...++++|++.+..+ ++++||+||||||+ T Consensus 224 vA~~~G~~atFmpKP~~g~~~~~g~h~~~s~~~~~~~~~~--------~~~~~~~~~l~~~~~~--~i~a~t~nsykRl~ 293 (356) T 2d3a_A 224 ITEIAGVVVTFDPKPIPGDWNGAGAHTNYSTESMRKEGGY--------EVIKAAIEKLKLRHKE--HIAAYGEGNERRLT 293 (356) T ss_dssp HHHHHTEEEECCSCSSCSSSCCCBEEEEEECTTTSSTTHH--------HHHHHHHHHHHHTHHH--HHTTSCTTHHHHCS T ss_pred HHHHCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCH--------HHHHHHHHHHHHHHHH--HHHCCCCCHHHHCC T ss_conf 9998499256416667899988737960352237877652--------7799999999998999--98636786066657 Q ss_pred CCCCCCE--EEEECCCCCCCEEECCCCC-CCCCCEEEECCCCCCCCHHHHHHHHHHHHHH Q ss_conf 8852120--1011368876401025788-7654124404675321279999999999998 Q gi|254780185|r 318 TDSQSPT--KLTYSTHNHSASCRIPYEN-KSDNKSIEIRFPDLSANPYLAPAAILMAGLD 374 (458) Q Consensus 318 p~~~ap~--~~~WG~~NR~a~iRip~~~-~~~~~riE~R~~da~aNPYL~lAailaAgl~ 374 (458) |++|||+ +++||.+||+|+||||... ...++|||+|+||++|||||++||||.++|. T Consensus 294 ~~~eap~~~~~~wG~~NRsa~iRIP~~~~~~~~~riE~R~pda~aNPYL~~Aail~t~~l 353 (356) T 2d3a_A 294 GRHETADINTFSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMDPYVVTSMIAETTIV 353 (356) T ss_dssp SSSSCCCTTCCCEESSCTTSSEECCHHHHHTTCCCEEECCCBTTCCHHHHHHHHHHHHTT T ss_pred CCCCCCCCCCCEECCCCCCEEEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCC T ss_conf 986577778437715678777996777888776079978877876899999999998565 No 7 >1r8g_A Hypothetical protein YBDK; structural genomics, unknown function, carboxylate-amine ligase, structure 2 function project, S2F; 2.15A {Escherichia coli} SCOP: d.128.1.3 PDB: 1tt4_A Probab=98.61 E-value=1.4e-06 Score=59.41 Aligned_cols=95 Identities=16% Similarity=0.162 Sum_probs=64.9 Q ss_pred CCCCCCCCCHHHCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-ECCCC---------------------- Q ss_conf 2221335621210365556-68887769999999999998744975444121-01456---------------------- Q gi|254780185|r 202 TKYHNQINDAQHSFGLQSE-SLLHASDNLQKYKYSVHQVANSYCKIATFMPK-PIASH---------------------- 257 (458) Q Consensus 202 e~~h~E~gpGQ~Ei~~~~~-~~l~aAD~~~~~k~~ik~iA~~~G~~ATFmpK-P~~~~---------------------- 257 (458) ..+..|..-+|+|++..|. +.-.+.+.+--.+..+++++.++|+..-.|+- |+... T Consensus 48 ~~i~~El~~~qlEl~t~p~~~~~e~~~~l~~~~~~l~~~~~~~g~~l~~~g~~P~~~~~~~~~~~~~ry~~~~~~~~~~~ 127 (372) T 1r8g_A 48 GEVKHDITESMLELATDVCRDINQAAGQFSAMQKVVLQAATDHHLEICGGGTHPFQKWQRQEVCDNERYQRTLENFGYLI 127 (372) T ss_dssp SEEEECSSSSEEEEECCSBSSHHHHHHHHHHHHHHHHHHHHHTTCEEECCSBCSSCCC----------------CCGGGG T ss_pred CCEEECCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHH T ss_conf 85444278727997378879999999999999999998774369164246788778721023685578999998645155 Q ss_pred ---CCCHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCHHCCCCC Q ss_conf ---86012011111146763122155565789999999999988641000006670 Q gi|254780185|r 258 ---NGSGMYLNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGIIKHAKSLNALTNAST 310 (458) Q Consensus 258 ---~GsG~Hih~Sl~~~~~n~f~~~~~~~ls~~~~~fiaGil~h~~al~a~~~Ptv 310 (458) .-+|+|+|+|+-+. +..-..+-.++.++|-+.|+++-+. T Consensus 128 ~~~~~~g~hvnv~~~~~--------------e~~~~~~~~~~~~~p~llaL~anSP 169 (372) T 1r8g_A 128 QQATVFGQHVHVGCASG--------------DDAIYLLHGLSRFVPHFIALSAASP 169 (372) T ss_dssp CSCCBCEEEEEEECSSH--------------HHHHHHHHHHHTTHHHHHHHHCCBC T ss_pred HHCCCCCCEEEECCCCH--------------HHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 42256475476379999--------------9999999999999899999961892 No 8 >2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione biosynthesis, beta-hairpin, redox regulation; HET: GLU; 2.09A {Brassica juncea} PDB: 2gwc_A* Probab=97.04 E-value=0.0031 Score=38.51 Aligned_cols=88 Identities=17% Similarity=0.178 Sum_probs=57.9 Q ss_pred EEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHCCCC-- Q ss_conf 25773133089970677777865477666765457777775003655455635524446899999999998-605411-- Q gi|254780185|r 125 TLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNGNNKGYDSHAKSSYTLPPQDKLHDMRSEIVSALN-NIGVQI-- 201 (458) Q Consensus 125 ~~~~g~E~EF~Lf~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~~~~~~~~~~~~ei~~~l~-~~Gi~i-- 201 (458) ..++|+|.|+|+++..... |. . | +-+.++.+.|. ..|++. T Consensus 34 ~~~IG~E~E~~~v~~~~~~--~v------------------~--------~---------~~i~~~l~~l~~~~~~~~~~ 76 (449) T 2gwd_A 34 KWRIGTEHEKFGFEVNTLR--PM------------------K--------Y---------DQIAELLNSIAERFEWEKVM 76 (449) T ss_dssp GCCEEEEEEEEEEETTTCC--BC------------------C--------H---------HHHHHHHHHHHHHHTCEEEE T ss_pred CCEEEEEEEEEEEECCCCC--CC------------------C--------H---------HHHHHHHHHHHHHCCCCEEC T ss_conf 8758986663465479898--79------------------8--------3---------88999999988761884315 Q ss_pred ------------CCCCCCCCCHHHCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHCCCEEEEE Q ss_conf ------------2221335621210365556-688877699999999999987449754441 Q gi|254780185|r 202 ------------TKYHNQINDAQHSFGLQSE-SLLHASDNLQKYKYSVHQVANSYCKIATFM 250 (458) Q Consensus 202 ------------e~~h~E~gpGQ~Ei~~~~~-~~l~aAD~~~~~k~~ik~iA~~~G~~ATFm 250 (458) ..+.-|-| ||+|++..+. +.-.+++.+..++..+++++.++|+....+ T Consensus 77 e~~~~i~l~~~~~~it~EPg-~QiEls~~p~~~i~e~~~~~~~~~~~l~~~~~~~g~~l~~~ 137 (449) T 2gwd_A 77 EGDKIIGLKQGKQSISLEPG-GQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGM 137 (449) T ss_dssp ETTEEEEEEETTEEEEECTT-CCEEEECCCBSSHHHHHHHHHHHHHHHHHHHHHHTEEEECC T ss_pred CCCCCCCCCCCCCEEEECCC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 78863020468962642699-66786056667889999999999999999999769863025 No 9 >1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Probab=63.74 E-value=4.2 Score=19.00 Aligned_cols=80 Identities=6% Similarity=0.040 Sum_probs=52.6 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCH--------HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECC Q ss_conf 8999999999986054112221335621--------21036555668887769999999999998744975444121014 Q gi|254780185|r 184 HDMRSEIVSALNNIGVQITKYHNQINDA--------QHSFGLQSESLLHASDNLQKYKYSVHQVANSYCKIATFMPKPIA 255 (458) Q Consensus 184 ~~~~~ei~~~l~~~Gi~ie~~h~E~gpG--------Q~Ei~~~~~~~l~aAD~~~~~k~~ik~iA~~~G~~ATFmpKP~~ 255 (458) -.++.+|.+.+.+.|++|+..+...... .|.+.+...-+ ..+| .--+|.-..++|.+.|+..++=|.=.+ T Consensus 104 pGlL~~It~~la~~~inI~~l~~~t~~~~~~~~~~~~f~~~~~i~vp-~~~d-~~~l~~~L~~L~~el~vDi~i~~~~~~ 181 (192) T 1u8s_A 104 LGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD-SGCN-LMQLQEEFDALCTALDVQGSLNFIKNS 181 (192) T ss_dssp TTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEEC-TTSC-HHHHHHHHHHHHHHHTCEEEEEEEEC- T ss_pred CCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEEEEEEECC-CCCC-HHHHHHHHHHHHHHHCCEEEEEECCCC T ss_conf 26899999999867997005899842677667778579999999579-9999-999999999999985967999976475 Q ss_pred CCCCCHHHHH Q ss_conf 5686012011 Q gi|254780185|r 256 SHNGSGMYLN 265 (458) Q Consensus 256 ~~~GsG~Hih 265 (458) ...||--|.| T Consensus 182 ~~~~~~~~~~ 191 (192) T 1u8s_A 182 QEGGSHHHHH 191 (192) T ss_dssp ---------- T ss_pred CCCCCCCCCC T ss_conf 1245555457 No 10 >3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A Probab=39.49 E-value=17 Score=15.27 Aligned_cols=97 Identities=12% Similarity=0.183 Sum_probs=56.1 Q ss_pred EEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHH-------HHHHHHHHHHHHHHHHH Q ss_conf 25773133089970677777865477666765457777775003655455635524-------44689999999999860 Q gi|254780185|r 125 TLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNGNNKGYDSHAKSSYTLPPQ-------DKLHDMRSEIVSALNNI 197 (458) Q Consensus 125 ~~~~g~E~EF~Lf~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~~~~-------~~~~~~~~ei~~~l~~~ 197 (458) +.+.|.|+.++.|-+.. ...+.... ........ +..|..+.++++|+-.+. .....++..+...|.+. T Consensus 191 E~L~G~E~S~~a~~dG~-~~~~lp~~---qDhKR~~d-gD~GPNTGGMGa~sp~p~~~~~l~~~i~~~ii~p~~~~l~~~ 265 (431) T 3mjf_A 191 EFLDGEEASFIVMVDGE-NVLPMATS---QDHKRVGD-GDTGPNTGGMGAYSPAPVVTDDVHQRVMDQVIWPTVRGMAAE 265 (431) T ss_dssp ECCCSEEEEEEEEEESS-CEEECCCB---EECCEEET-TTEEEECSCSEEEESCTTSCHHHHHHHHHHTHHHHHHHHHHT T ss_pred CCCCCEEEEEEEEECCC-EEEEEECC---CCCCCCCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHC T ss_conf 20675389999997799-59953230---01522247-999998898864688987898999999875001177788635 Q ss_pred CCCCCCCC------CCCC-CHHHCCCCCCCCHHHHH Q ss_conf 54112221------3356-21210365556688877 Q gi|254780185|r 198 GVQITKYH------NQIN-DAQHSFGLQSESLLHAS 226 (458) Q Consensus 198 Gi~ie~~h------~E~g-pGQ~Ei~~~~~~~l~aA 226 (458) |++..++- .+.| |--.|+|..+.||-..+ T Consensus 266 g~~y~GvLy~glMlt~~G~pkViEyN~RfGDPE~q~ 301 (431) T 3mjf_A 266 GNIYTGFLYAGLMISADGQPKVIEFNCRFGDPETQP 301 (431) T ss_dssp TCCCEEEEEEEEEECTTSCEEEEEECGGGSTTTHHH T ss_pred CCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCHHH T ss_conf 995212353115883689878999873037840445 No 11 >2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis} Probab=32.18 E-value=22 Score=14.54 Aligned_cols=30 Identities=13% Similarity=0.307 Sum_probs=18.2 Q ss_pred CCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEE Q ss_conf 98798999999985798399999978998252378 Q gi|254780185|r 1 MVDKATSIIQKIAQEKVKFIDLRFTDLQGKFRHIS 35 (458) Q Consensus 1 m~~~~~~i~~~l~~~~I~~V~~~~~Dl~G~~R~k~ 35 (458) |.+++.+++..+.+.||+. |+| .|.+|.+. T Consensus 3 ~~~s~~~lL~~l~~~GI~L----~~e-~~kLr~~a 32 (78) T 2jug_A 3 LGSSAGALLAHAASLGVRL----WVE-GERLRFQA 32 (78) T ss_dssp CCSSHHHHHHHHHHHTCEE----EEE-TTEEEEEC T ss_pred HHHHHHHHHHHHHHCCCEE----EEE-CCEEEEEC T ss_conf 0330999999999889889----998-99999967 No 12 >2iru_A Putative DNA ligase-like protein RV0938/MT0965; polymerase, primase, NHEJ, transferase; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2irx_A* 2iry_A* 2r9l_A* Probab=30.04 E-value=23 Score=14.32 Aligned_cols=130 Identities=11% Similarity=0.130 Sum_probs=68.6 Q ss_pred HHHHHHHHCCCCCCCCCCC------------CCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC Q ss_conf 9999986054112221335------------6212103655566888776999999999999874497544412101456 Q gi|254780185|r 190 IVSALNNIGVQITKYHNQI------------NDAQHSFGLQSESLLHASDNLQKYKYSVHQVANSYCKIATFMPKPIASH 257 (458) Q Consensus 190 i~~~l~~~Gi~ie~~h~E~------------gpGQ~Ei~~~~~~~l~aAD~~~~~k~~ik~iA~~~G~~ATFmpKP~~~~ 257 (458) ++-..+..-|++..+..-. -|.+.-|.+.|.+++.-+| ++-.=..+|++-.+.|+.+ |... T Consensus 102 Lv~lan~g~iE~H~w~~r~~~~~g~~~~~~~~PD~lvfDLDP~~~~~f~~-v~~~A~~vr~~L~~lgL~s------f~KT 174 (303) T 2iru_A 102 LAWIAQQAALEVHVPQWRFVAEPGSGELNPGPATRLVFDLDPGEGVMMAQ-LAEVARAVRDLLADIGLVT------FPVT 174 (303) T ss_dssp HHHHHHTTCCEEEECSEEEEECTTTCCEEEEEEEEEEEEEEECTTCCHHH-HHHHHHHHHHHHHTTTCCC------EEEE T ss_pred HHHHHHHCCEEECCCHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHH-HHHHHHHHHHHHHHCCCCC------CCCC T ss_conf 99999748787026500035556765468899986998489886899999-9999999999999769962------3054 Q ss_pred CC-CHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHH-HHHCCHHCCCCCHHHHHHCCCCCCCEEEEECCCCCCC Q ss_conf 86-012011111146763122155565789999999999988-6410000066700144318885212010113688764 Q gi|254780185|r 258 NG-SGMYLNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGIIKH-AKSLNALTNASTNSYKRLLTDSQSPTKLTYSTHNHSA 335 (458) Q Consensus 258 ~G-sG~Hih~Sl~~~~~n~f~~~~~~~ls~~~~~fiaGil~h-~~al~a~~~PtvNSYkRl~p~~~ap~~~~WG~~NR~a 335 (458) +| .|+||.+-|... +. -+.. ...-++||-.++. .|++.-. +-.|.... --.++-|..|+|.. T Consensus 175 SG~kGlHV~vPl~~~----~~---~~~~-r~fa~~lA~~l~~~~P~~~T~-----~~~k~~R~---grVfiDylqN~~g~ 238 (303) T 2iru_A 175 SGSKGLHLYTPLDEP----VS---SRGA-TVLAKRVAQRLEQAMPALVTS-----TMTKSLRA---GKVFVDWSQNSGSK 238 (303) T ss_dssp CSSSCEEEEEEEEEE----EC---HHHH-HHHHHHHHHHHHHHCTTTEES-----SCCGGGCT---TSEEEECGGGSTTC T ss_pred CCCCEEEEEEECCCC----CC---HHHH-HHHHHHHHHHHHHHCCHHHHH-----HHHHHHCC---CCEEEECCCCCCCC T ss_conf 799857999968999----89---8999-999999999998868414136-----64186489---96899763478998 Q ss_pred EEECCCC Q ss_conf 0102578 Q gi|254780185|r 336 SCRIPYE 342 (458) Q Consensus 336 ~iRip~~ 342 (458) .+=-|.+ T Consensus 239 T~vapYS 245 (303) T 2iru_A 239 TTIAPYS 245 (303) T ss_dssp CEECTTC T ss_pred EEEECCC T ss_conf 5772466 No 13 >1zpv_A ACT domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Streptococcus pneumoniae TIGR4} SCOP: d.58.18.7 Probab=28.94 E-value=25 Score=14.20 Aligned_cols=63 Identities=6% Similarity=0.116 Sum_probs=35.3 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEE Q ss_conf 99999999986054112221335621210365556688877699999999999987449754441 Q gi|254780185|r 186 MRSEIVSALNNIGVQITKYHNQINDAQHSFGLQSESLLHASDNLQKYKYSVHQVANSYCKIATFM 250 (458) Q Consensus 186 ~~~ei~~~l~~~Gi~ie~~h~E~gpGQ~Ei~~~~~~~l~aAD~~~~~k~~ik~iA~~~G~~ATFm 250 (458) ++.++...|.+.|+.|.........+.|-..+....+ .....--++.-+..+|.++|+..+.. T Consensus 18 Iva~vt~~L~~~g~NI~d~~q~~~~~~F~~~~~v~~~--~~~~~~~l~~~l~~la~~l~l~i~i~ 80 (91) T 1zpv_A 18 IVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD--EKQDFTYLRNEFEAFGQTLNVKINIQ 80 (91) T ss_dssp HHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES--SCCCHHHHHHHHHHHHHHHTEEEEEE T ss_pred HHHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEEECC--CCCCHHHHHHHHHHHHHHCCCEEEEE T ss_conf 8999999999879949984508953712899999649--99999999999999999839689998 No 14 >2qrd_A SNF1-like protein kinase SSP2; AMPK, ADP, ATP, ATP-binding, kinase, nucleotide-binding, serine/threonine-protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} SCOP: d.129.6.2 PDB: 2ooy_A* 2qr1_A* 2qrc_A* 2oox_A* 2qre_A* Probab=26.15 E-value=28 Score=13.89 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=23.2 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 6355244468999999999986054112221 Q gi|254780185|r 175 YTLPPQDKLHDMRSEIVSALNNIGVQITKYH 205 (458) Q Consensus 175 y~~~~~~~~~~~~~ei~~~l~~~Gi~ie~~h 205 (458) ++|.....-.+++.+|+++|.++|+.++... T Consensus 15 lGIRSrs~P~eiM~eVykALk~Lg~eWk~~~ 45 (137) T 2qrd_A 15 FGVRCRGDAPEILLAVYRALQRAGAQFTVPK 45 (137) T ss_dssp ESEEEESCHHHHHHHHHHHHHHHTCEECCCC T ss_pred ECCCCCCCHHHHHHHHHHHHHHCCCEEEECC T ss_conf 3155689989999999999998599796557 No 15 >1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A Probab=26.15 E-value=28 Score=13.89 Aligned_cols=38 Identities=5% Similarity=0.058 Sum_probs=30.6 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCC Q ss_conf 44689999999999860541122213356212103655 Q gi|254780185|r 181 DKLHDMRSEIVSALNNIGVQITKYHNQINDAQHSFGLQ 218 (458) Q Consensus 181 ~~~~~~~~ei~~~l~~~Gi~ie~~h~E~gpGQ~Ei~~~ 218 (458) +-...+++...+.|...|+..+.++-..-||-||+.+. T Consensus 29 ~I~~~Ll~ga~~~L~~~g~~~~~i~~~~VPGa~EiP~~ 66 (168) T 1ejb_A 29 VIIDALVKGAIERMASLGVEENNIIIETVPGSYELPWG 66 (168) T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEECSSGGGHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHH T ss_conf 99999999999999985998224699977828888999 No 16 >2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A* Probab=24.24 E-value=30 Score=13.67 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=18.0 Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHC Q ss_conf 8999999999986054112221335621210 Q gi|254780185|r 184 HDMRSEIVSALNNIGVQITKYHNQINDAQHS 214 (458) Q Consensus 184 ~~~~~ei~~~l~~~Gi~ie~~h~E~gpGQ~E 214 (458) ..+++++.+.|.++|++.+..+.| |||+- T Consensus 221 ~~m~~~v~~~L~~~Gv~~~~~~~~--~~~~~ 249 (257) T 2qdx_A 221 PSMLEETSAVLDSFGLKISPRMGE--PGDYL 249 (257) T ss_dssp HHHHHHHHHHHHHTTCCBCSSTTS--CBSEE T ss_pred HHHHHHHHHHHHHCCCCCCCCCCC--CCCEE T ss_conf 999999999999869985578799--98699 No 17 >2hfv_A Hypothetical protein RPA1041; NESG, GFT-alpha+beta, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: d.58.5.5 Probab=21.86 E-value=33 Score=13.38 Aligned_cols=53 Identities=13% Similarity=0.184 Sum_probs=30.0 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 99999998605411222133562121036555668887769999999999998 Q gi|254780185|r 188 SEIVSALNNIGVQITKYHNQINDAQHSFGLQSESLLHASDNLQKYKYSVHQVA 240 (458) Q Consensus 188 ~ei~~~l~~~Gi~ie~~h~E~gpGQ~Ei~~~~~~~l~aAD~~~~~k~~ik~iA 240 (458) .=+...|+..||+..-.+......+-+|.+.|...+-..++...+|.++++.- T Consensus 36 s~~~aLL~~aGI~~~V~De~mS~leG~ig~~PrRimV~deD~~~Ar~IL~dag 88 (97) T 2hfv_A 36 SAVGALLDGADIGHLVLDQNMSILEGSLGVIPRRVLVHEDDLAGARRLLTDAG 88 (97) T ss_dssp HHHHHHHHHTTCCEECCSCCCCSSSCCSSSSCEEEEEEGGGHHHHHHHHHHTT T ss_pred HHHHHHHHHCCCCEEEECCCHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHCC T ss_conf 99999997689987980540033234577664799983678999999999769 Done!