HHSEARCH alignment of GI: 254780185 and SCOP domain: d1f52a2

Alignment
>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=100.00  E-value=0  Score=752.02  Aligned_cols=356  Identities=44%  Similarity=0.747  Sum_probs=313.3

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCC------CCCCCCCCEECCC-CCCCC
Q ss_conf             0255532355679987303452257731330899706777778654776667654------5777777500365-54556
Q gi|254780185|r  103 NRDPRYTAQKAIDYLQTTDIGDTLLLGITTEFFVFDNVHCTISPIKSGFALESTE------FLQNGNNKGYDSH-AKSSY  175 (458)
Q Consensus       103 ~~~PR~~Lk~~~~~l~~~~~G~~~~~g~E~EF~Lf~~~~~~~~p~~~~~~~~~~~------~~~~~~~~g~~~~-~~~~y  175 (458)
                      +.|||++|||+++++++.++..++.+|+|+|||||+++...........+.+...      ....+.+.++... ..++|
T Consensus         1 ~~dPR~iLkr~~~~l~~~G~~~~~~~g~E~EF~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (368)
T d1f52a2           1 DRDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGGYF   80 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHHTSCSEEEEEEEEEEEEESEEEEEEETTEEEEEEECTTCGGGGGCCCTTCCCCCCCCTTCCSS
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCCEEEEECEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf             98879999999999997699870378854288999421035576777565577322456887666887787655577615


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf             3552444689999999999860541122213356-212103655566888776999999999999874497544412101
Q gi|254780185|r  176 TLPPQDKLHDMRSEIVSALNNIGVQITKYHNQIN-DAQHSFGLQSESLLHASDNLQKYKYSVHQVANSYCKIATFMPKPI  254 (458)
Q Consensus       176 ~~~~~~~~~~~~~ei~~~l~~~Gi~ie~~h~E~g-pGQ~Ei~~~~~~~l~aAD~~~~~k~~ik~iA~~~G~~ATFmpKP~  254 (458)
                      ++.+.+...+++++|++.|+.+||+|+++|+|+| ||||||++.|.++|+|||+++++|++||+||++||++|||||||+
T Consensus        81 ~~~~~~~~~~~~~~i~~~l~~~Gi~ve~~~~E~~~~gq~Ei~~~~~~~l~aAD~~~~~k~~ik~iA~~~Gl~atFmpKP~  160 (368)
T d1f52a2          81 PVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPKPM  160 (368)
T ss_dssp             BCTTSSCCHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTCEEECCSCSS
T ss_pred             EEECCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCC
T ss_conf             53001107889999999888622570564223456784322078786577889999999999999997436334741568


Q ss_pred             CCCCCCHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHCCCCCCCEEEEECCCCCC
Q ss_conf             45686012011111146763122155565789999999999988641000006670014431888521201011368876
Q gi|254780185|r  255 ASHNGSGMYLNMSIHKGEKAIFTGNQHDRVSLKGLYYLGGIIKHAKSLNALTNASTNSYKRLLTDSQSPTKLTYSTHNHS  334 (458)
Q Consensus       255 ~~~~GsG~Hih~Sl~~~~~n~f~~~~~~~ls~~~~~fiaGil~h~~al~a~~~PtvNSYkRl~p~~~ap~~~~WG~~NR~  334 (458)
                      .+.+|||||+|+|||++++|+|.++++.+||+.+++||||||+|++++|+|++||+||||||+|++|||++++||.+||+
T Consensus       161 ~~~~GsG~HiH~Sl~~~~~n~~~~~~~~~lS~~~~~fiaGll~~~~~~~al~~PtvNSYkRl~~~~~aP~~~~Wg~~NR~  240 (368)
T d1f52a2         161 FGDNGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYYIGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLAYSARNRS  240 (368)
T ss_dssp             TTSCCCCEEEEEEEEETTEETTBCSSGGGBCHHHHHHHHHHHHTHHHHHHHHSCSGGGGGTSSSCSSCCCEEEEESSCTT
T ss_pred             CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEEECCCCCC
T ss_conf             89877532589874159985656555556489999999999986699899977996077652477768743452367655


Q ss_pred             CEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH----HHHCCCCCCCCHHHHHHH
Q ss_conf             4010257887654124404675321279999999999998788559998665578877----771320001798999999
Q gi|254780185|r  335 ASCRIPYENKSDNKSIEIRFPDLSANPYLAPAAILMAGLDGIAKKIHPGKNIDELSLE----EQNTIPRICISLRESLEN  410 (458)
Q Consensus       335 a~iRip~~~~~~~~riE~R~~da~aNPYL~lAailaAgl~Gi~~~l~p~~~~~~~~~~----~~~~~~~LP~~L~eAl~~  410 (458)
                      ++||||..++++++|||+|++|++|||||++||+|+|||+||+++++||+++.++.++    +...+++||.||.|||++
T Consensus       241 a~iRi~~~~~~~~~riE~R~~da~aNPYL~lAa~laagl~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~lP~sl~eAl~a  320 (368)
T d1f52a2         241 ASIRIPVVASPKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPGEPMDKNLYDLPPEEAKEIPQVAGSLEEALNA  320 (368)
T ss_dssp             EEEECCCCSCGGGCCEEECCCCTTSCHHHHHHHHHHHHHHHHHTTCCCCSCCCSCCSSSCCSSTTCCCBCCSSHHHHHHH
T ss_pred             CCEEECCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHCHHCCCCCHHHHHHH
T ss_conf             31464025788662478447880177789999999976542421589999777872448976762320151379999999


Q ss_pred             HHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
Q ss_conf             873989898413378899999999999999999659997899863579
Q gi|254780185|r  411 LDKDREFLKVGNVFDDDQIDAFINLKMKEVLKLESSPSPVEFEMYCSI  458 (458)
Q Consensus       411 l~~d~~~~~~~~~lG~~~v~~~~~~K~~E~~~~~~~vt~wE~~~Y~~~  458 (458)
                      |++|+++....++||++|++.|+++||+||++|+++||+||+++||||
T Consensus       321 l~~d~~~~~a~~~lGe~~v~~y~~~K~~E~~~~~~~vt~wE~~~Yl~~  368 (368)
T d1f52a2         321 LDLDREFLKAGGVFTDEAIDAYIALRREEDDRVRMTPHPVEFELYYSV  368 (368)
T ss_dssp             HHHTCHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHTTC
T ss_pred             HHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
T ss_conf             964978788765156999999999999999999679999999741689


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: Glutamine synthetase catalytic domain
domain: Glutamine synthetase, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]