HHSEARCH alignment of GI: 254780185 and SCOP domain: d2bvca2

Alignment
>d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=100.00  E-value=0  Score=734.81  Aligned_cols=355  Identities=37%  Similarity=0.616  Sum_probs=315.8

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC---------CCEECCC-CCC
Q ss_conf             255532355679987303452257731330899706777778654776667654577777---------7500365-545
Q gi|254780185|r  104 RDPRYTAQKAIDYLQTTDIGDTLLLGITTEFFVFDNVHCTISPIKSGFALESTEFLQNGN---------NKGYDSH-AKS  173 (458)
Q Consensus       104 ~~PR~~Lk~~~~~l~~~~~G~~~~~g~E~EF~Lf~~~~~~~~p~~~~~~~~~~~~~~~~~---------~~g~~~~-~~~  173 (458)
                      .|||++|||+++++++.++.+++.+|+|+||||||+......+....+..++....|+.+         +.+|... ..+
T Consensus         2 ~DPR~iLkk~~~~l~~~G~~~~~~~g~E~EF~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (374)
T d2bvca2           2 RDPRNIARKAENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGWWNTGAATEADGSPNRGYKVRHKGG   81 (374)
T ss_dssp             TCHHHHHHHHHHHHHHHSSCSEEEEEEEECEEEESEEEEEECSSCEEEEEECTTBGGGTTCSBCTTSCBCCCCCBCTTCC
T ss_pred             CCHHHHHHHHHHHHHHCCCCCEEEEEECEEEEEECCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             88699999999999977998703577265899971454455667762013630002467876567888877866565665


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             563552444689999999999860541122213356-2121036555668887769999999999998744975444121
Q gi|254780185|r  174 SYTLPPQDKLHDMRSEIVSALNNIGVQITKYHNQIN-DAQHSFGLQSESLLHASDNLQKYKYSVHQVANSYCKIATFMPK  252 (458)
Q Consensus       174 ~y~~~~~~~~~~~~~ei~~~l~~~Gi~ie~~h~E~g-pGQ~Ei~~~~~~~l~aAD~~~~~k~~ik~iA~~~G~~ATFmpK  252 (458)
                      +|...+.+...+++.+|++.|+.+||+++++|+|+| |||+||++.|.++|+|||+++++|++||+||.+||+.||||||
T Consensus        82 ~~~~~~~~~~~~~~~~i~~~l~~~Gi~~~~~~~E~~~~gQ~Ei~~~~~~~l~aAD~~~~~k~~ik~vA~~~G~~atFmpK  161 (374)
T d2bvca2          82 YFPVAPNDQYVDLRDKMLTNLINSGFILEKGHHEVGSGGQAEINYQFNSLLHAADDMQLYKYIIKNTAWQNGKTVTFMPK  161 (374)
T ss_dssp             SCBCTTTSCCHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTCEEECCSC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             00020002268999999987874697637632156668258870676306689999999999999999863974777643


Q ss_pred             ECCCCCCCHHHHHHHHCCCC-CCCEECCCCCCCCHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHCCCCCCCEEEEECCC
Q ss_conf             01456860120111111467-63122155565789999999999988641000006670014431888521201011368
Q gi|254780185|r  253 PIASHNGSGMYLNMSIHKGE-KAIFTGNQHDRVSLKGLYYLGGIIKHAKSLNALTNASTNSYKRLLTDSQSPTKLTYSTH  331 (458)
Q Consensus       253 P~~~~~GsG~Hih~Sl~~~~-~n~f~~~~~~~ls~~~~~fiaGil~h~~al~a~~~PtvNSYkRl~p~~~ap~~~~WG~~  331 (458)
                      |+.+.+|||||+|+|||+++ +|+|+++++.+||+.+++||||||+|++++++|++|||||||||+|++|||++++||.+
T Consensus       162 P~~~~~Gsg~H~h~Sl~~~~~n~~~~~~~~~~lS~~~~~~iaGlL~h~~~l~al~~P~vNSY~Rl~~~~~ap~~~~Wg~~  241 (374)
T d2bvca2         162 PLFGDNGSGMHCHQSLWKDGAPLMYDETGYAGLSDTARHYIGGLLHHAPSLLAFTNPTVNSYKRLVPGYEAPINLVYSQR  241 (374)
T ss_dssp             SSTTSCCCCEEEEEEEEETTEECSBCTTSGGGBCHHHHHHHHHHHHHHHHHHHHHSCSTTHHHHSSTTSSSCSBCCEEET
T ss_pred             ECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEEECCC
T ss_conf             15678876600799741589886555666555679999999999852098889873787426534898756447740467


Q ss_pred             CCCCEEECCCCC-CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH----HHHHCCCCCCCCHHH
Q ss_conf             876401025788-765412440467532127999999999999878855999866557887----777132000179899
Q gi|254780185|r  332 NHSASCRIPYEN-KSDNKSIEIRFPDLSANPYLAPAAILMAGLDGIAKKIHPGKNIDELSL----EEQNTIPRICISLRE  406 (458)
Q Consensus       332 NR~a~iRip~~~-~~~~~riE~R~~da~aNPYL~lAailaAgl~Gi~~~l~p~~~~~~~~~----~~~~~~~~LP~~L~e  406 (458)
                      ||+++||||..+ +++++|||+|++|++|||||++||+|+|||+||+++++|++|+.++++    ++...+++||+||.|
T Consensus       242 nR~~~iRi~~~~~~~~~~riE~R~~da~aNPYL~lAailaagl~Gi~~~l~p~~p~~~~~~~~~~~~~~~~~~LP~sl~e  321 (374)
T d2bvca2         242 NRSACVRIPITGSNPKAKRLEFRSPDSSGNPYLAFSAMLMAGLDGIKNKIEPQAPVDKDLYELPPEEAASIPQTPTQLSD  321 (374)
T ss_dssp             CTTSSEEECCCCSCTTSCCEEECSCCSSSCHHHHHHHHHHHHHHHHHTTCCCCCCCCSCGGGCCHHHHHTSCBCCSSHHH
T ss_pred             CCCCCEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHH
T ss_conf             66553110244689756268852788331078999999998666564123446877785132996576581325017999


Q ss_pred             HHHHHHHCHHHHHHHCCCCHHHHHHHHHHHH-HHHHHHHCCCCHHHHHHHCCC
Q ss_conf             9999873989898413378899999999999-999999659997899863579
Q gi|254780185|r  407 SLENLDKDREFLKVGNVFDDDQIDAFINLKM-KEVLKLESSPSPVEFEMYCSI  458 (458)
Q Consensus       407 Al~~l~~d~~~~~~~~~lG~~~v~~~~~~K~-~E~~~~~~~vt~wE~~~Y~~~  458 (458)
                      ||++|++|+++++.+++||++|++.|+++|| .||++|++.||+||+++||||
T Consensus       322 Al~~l~~d~~~~~~~~~~g~~~i~~y~~~Kr~~E~~~~~~~vt~wE~~~Y~~~  374 (374)
T d2bvca2         322 VIDRLEADHEYLTEGGVFTNDLIETWISFKRENEIEPVNIRPHPYEFALYYDV  374 (374)
T ss_dssp             HHHHHHHCCHHHHGGGSSCHHHHHHHHHHHHHHTHHHHHTSCCHHHHHHHTTC
T ss_pred             HHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCC
T ss_conf             99999759787876563789999999999999999999689999999604899


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: Glutamine synthetase catalytic domain
domain: Glutamine synthetase, C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]